RNA–Protein interactions for RNA: ENST00000267838.6

LYSMD2-201, Transcript of LysM domain containing 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LYSMD2, Length 1,759 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD2-201ENST00000267838 NISCHQ9Y2I1 1504 aa46.3■■■■■ 5
LYSMD2-201ENST00000267838 CCDC180Q9P1Z9 1646 aa40.32■■■■■ 4.05
LYSMD2-201ENST00000267838 ZCCHC6Q5VYS8 1495 aaKnown RBP38.92■■■■□ 3.82
LYSMD2-201ENST00000267838 DCAF1Q9Y4B6 1507 aa38.27■■■■□ 3.72
LYSMD2-201ENST00000267838 DCAF8L2P0C7V8 631 aa38.2■■■■□ 3.71
LYSMD2-201ENST00000267838 ABCC9O60706 1549 aa38.02■■■■□ 3.68
LYSMD2-201ENST00000267838 SHROOM4Q9ULL8 1493 aa37.88■■■■□ 3.65
LYSMD2-201ENST00000267838 MYO15BQ96JP2 1530 aa37.76■■■■□ 3.64
LYSMD2-201ENST00000267838 NACADO15069 1562 aa37.51■■■■□ 3.6
LYSMD2-201ENST00000267838 RB1CC1Q8TDY2 1594 aa37.17■■■■□ 3.54
LYSMD2-201ENST00000267838 SCRIBQ14160 1630 aa37.11■■■■□ 3.53
LYSMD2-201ENST00000267838 SUPT5HO00267 1087 aaKnown RBP36.5■■■■□ 3.43
LYSMD2-201ENST00000267838 UNC13AQ9UPW8 1703 aa36.46■■■■□ 3.43
LYSMD2-201ENST00000267838 BICRAQ9NZM4 1560 aa36.05■■■■□ 3.36
LYSMD2-201ENST00000267838 CECR2Q9BXF3 1484 aa35.98■■■■□ 3.35
LYSMD2-201ENST00000267838 RSF1Q96T23 1441 aaPredicted RBP35.97■■■■□ 3.35
LYSMD2-201ENST00000267838 PABPN1Q86U42 306 aaKnown RBP eCLIP35.87■■■■□ 3.33
LYSMD2-201ENST00000267838 MROH2BQ7Z745 1585 aa35.78■■■■□ 3.32
LYSMD2-201ENST00000267838 BAZ1AQ9NRL2 1556 aaPredicted RBP35.74■■■■□ 3.31
LYSMD2-201ENST00000267838 SMARCA4P51532 1647 aa35.57■■■■□ 3.29
LYSMD2-201ENST00000267838 WIZO95785 1651 aa35.52■■■■□ 3.28
LYSMD2-201ENST00000267838 TOP2AP11388 1531 aaKnown RBP35.13■■■■□ 3.21
LYSMD2-201ENST00000267838 PEG3Q9GZU2 1588 aa35.12■■■■□ 3.21
LYSMD2-201ENST00000267838 CHIC1Q5VXU3 224 aa35■■■■□ 3.19
LYSMD2-201ENST00000267838 EIF4G1Q04637 1599 aaKnown RBP34.95■■■■□ 3.19
LYSMD2-201ENST00000267838 ATAD2BQ9ULI0 1458 aa34.94■■■■□ 3.18
LYSMD2-201ENST00000267838 SMARCA2P51531 1590 aa34.93■■■■□ 3.18
LYSMD2-201ENST00000267838 CCDC88BA6NC98 1476 aa34.78■■■■□ 3.16
LYSMD2-201ENST00000267838 BAZ1BQ9UIG0 1483 aaKnown RBP34.76■■■■□ 3.16
LYSMD2-201ENST00000267838 NCAPD3P42695 1498 aa34.62■■■■□ 3.13
LYSMD2-201ENST00000267838 HMGXB3Q12766 1538 aa34.59■■■■□ 3.13
LYSMD2-201ENST00000267838 CC2D2AQ9P2K1 1620 aa34.41■■■■□ 3.1
LYSMD2-201ENST00000267838 TRIM41Q8WV44 630 aa34.31■■■■□ 3.08
LYSMD2-201ENST00000267838 ABCC8Q09428 1581 aa34.1■■■■□ 3.05
LYSMD2-201ENST00000267838 CFTRP13569 1480 aa33.89■■■■□ 3.02
LYSMD2-201ENST00000267838 DNAJC5BQ9UF47 199 aa33.88■■■■□ 3.01
LYSMD2-201ENST00000267838 WRNQ14191 1432 aaPredicted RBP eCLIP33.85■■■■□ 3.01
LYSMD2-201ENST00000267838 PRDM2Q13029 1718 aa33.76■■■■□ 3
LYSMD2-201ENST00000267838 CADPSQ9ULU8 1353 aa33.74■■■□□ 2.99
LYSMD2-201ENST00000267838 SYNJ1O43426 1573 aa33.72■■■□□ 2.99
LYSMD2-201ENST00000267838 FAM9AQ8IZU1 332 aaPredicted RBP33.69■■■□□ 2.98
LYSMD2-201ENST00000267838 LOC105371045A0A1W2PR82 267 aa33.67■■■□□ 2.98
LYSMD2-201ENST00000267838 TOP2BQ02880 1626 aa33.57■■■□□ 2.97
LYSMD2-201ENST00000267838 BIVM-ERCC5R4GMW8 1640 aa33.55■■■□□ 2.96
LYSMD2-201ENST00000267838 SOGA1O94964 1423 aa33.48■■■□□ 2.95
LYSMD2-201ENST00000267838 CUX1P39880 1505 aa33.45■■■□□ 2.95
LYSMD2-201ENST00000267838 LAMC3Q9Y6N6 1575 aa33.43■■■□□ 2.94
LYSMD2-201ENST00000267838 NESP48681 1621 aa33.42■■■□□ 2.94
LYSMD2-201ENST00000267838 EEA1Q15075 1411 aa33.42■■■□□ 2.94
LYSMD2-201ENST00000267838 FANCD2Q9BXW9 1451 aa33.38■■■□□ 2.93
LYSMD2-201ENST00000267838 RUSC2Q8N2Y8 1516 aa33.35■■■□□ 2.93
LYSMD2-201ENST00000267838 CSRNP3Q8WYN3 585 aa33.24■■■□□ 2.91
LYSMD2-201ENST00000267838 EHMT2Q96KQ7 1210 aa33.22■■■□□ 2.91
LYSMD2-201ENST00000267838 PDS5BQ9NTI5 1447 aa33.16■■■□□ 2.9
LYSMD2-201ENST00000267838 CEP164Q9UPV0 1460 aa33.16■■■□□ 2.9
LYSMD2-201ENST00000267838 DNMBPQ6XZF7 1577 aa33.11■■■□□ 2.89
LYSMD2-201ENST00000267838 FGD5Q6ZNL6 1462 aa33.06■■■□□ 2.88
LYSMD2-201ENST00000267838 KIF21AQ7Z4S6 1674 aa33.04■■■□□ 2.88
LYSMD2-201ENST00000267838 TOPBP1Q92547 1522 aa33.04■■■□□ 2.88
LYSMD2-201ENST00000267838 KIF21BO75037 1637 aa33■■■□□ 2.87
LYSMD2-201ENST00000267838 KIF27Q86VH2 1401 aa32.98■■■□□ 2.87
LYSMD2-201ENST00000267838 GOLGA3Q08378 1498 aa32.98■■■□□ 2.87
LYSMD2-201ENST00000267838 URB2Q14146 1524 aaKnown RBP32.96■■■□□ 2.87
LYSMD2-201ENST00000267838 TNIKQ9UKE5 1360 aa32.9■■■□□ 2.86
LYSMD2-201ENST00000267838 POLA1P09884 1462 aaPredicted RBP32.88■■■□□ 2.85
LYSMD2-201ENST00000267838 CUX2O14529 1486 aa32.88■■■□□ 2.85
LYSMD2-201ENST00000267838 UBTFP17480 764 aaKnown RBP32.83■■■□□ 2.85
LYSMD2-201ENST00000267838 PRXQ9BXM0 1461 aa32.79■■■□□ 2.84
LYSMD2-201ENST00000267838 RAPGEF2Q9Y4G8 1499 aa32.79■■■□□ 2.84
LYSMD2-201ENST00000267838 RAD54L2Q9Y4B4 1467 aa32.78■■■□□ 2.84
LYSMD2-201ENST00000267838 ABCA10Q8WWZ4 1543 aa32.77■■■□□ 2.84
LYSMD2-201ENST00000267838 ERICH3Q5RHP9 1530 aa32.75■■■□□ 2.83
LYSMD2-201ENST00000267838 CEP162Q5TB80 1403 aa32.74■■■□□ 2.83
LYSMD2-201ENST00000267838 MRC2Q9UBG0 1479 aa32.73■■■□□ 2.83
LYSMD2-201ENST00000267838 WDR97A6NE52 1622 aa32.68■■■□□ 2.82
LYSMD2-201ENST00000267838 IGF1RP08069 1367 aa32.67■■■□□ 2.82
LYSMD2-201ENST00000267838 ERCC6Q03468 1493 aa32.58■■■□□ 2.81
LYSMD2-201ENST00000267838 WDR62O43379 1518 aa32.56■■■□□ 2.8
LYSMD2-201ENST00000267838 TARBP1Q13395 1621 aaKnown RBP32.54■■■□□ 2.8
LYSMD2-201ENST00000267838 CARMIL1Q5VZK9 1371 aa32.52■■■□□ 2.8
LYSMD2-201ENST00000267838 ABCA5Q8WWZ7 1642 aa32.51■■■□□ 2.79
LYSMD2-201ENST00000267838 CLIP1P30622 1438 aa32.46■■■□□ 2.79
LYSMD2-201ENST00000267838 TDRD9Q8NDG6 1382 aaKnown RBP32.45■■■□□ 2.79
LYSMD2-201ENST00000267838 THOC2Q8NI27 1593 aaKnown RBP32.45■■■□□ 2.78
LYSMD2-201ENST00000267838 CUL7Q14999 1698 aa32.43■■■□□ 2.78
LYSMD2-201ENST00000267838 GAPVD1Q14C86 1478 aa32.42■■■□□ 2.78
LYSMD2-201ENST00000267838 IFT140Q96RY7 1462 aa32.35■■■□□ 2.77
LYSMD2-201ENST00000267838 RANGAP1P46060 587 aaPredicted RBP32.27■■■□□ 2.76
LYSMD2-201ENST00000267838 PBRM1Q86U86 1689 aa32.26■■■□□ 2.75
LYSMD2-201ENST00000267838 PCGF6Q9BYE7 350 aa32.26■■■□□ 2.75
LYSMD2-201ENST00000267838 TRIM26Q12899 539 aaPredicted RBP32.23■■■□□ 2.75
LYSMD2-201ENST00000267838 AQRO60306 1485 aaKnown RBP eCLIP32.23■■■□□ 2.75
LYSMD2-201ENST00000267838 VPS8Q8N3P4 1428 aa32.19■■■□□ 2.74
LYSMD2-201ENST00000267838 ZNF608Q9ULD9 1512 aaPredicted RBP32.18■■■□□ 2.74
LYSMD2-201ENST00000267838 GRIN2BQ13224 1484 aa32.14■■■□□ 2.74
LYSMD2-201ENST00000267838 ARAP1Q96P48 1450 aa32.13■■■□□ 2.73
LYSMD2-201ENST00000267838 CTTNBP2Q8WZ74 1663 aa32.11■■■□□ 2.73
LYSMD2-201ENST00000267838 ARHGAP35Q9NRY4 1499 aa32.1■■■□□ 2.73
LYSMD2-201ENST00000267838 PPARGC1BQ86YN6 1023 aaKnown RBP32.09■■■□□ 2.73
LYSMD2-201ENST00000267838 HRCP23327 699 aa32.09■■■□□ 2.73
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms