Protein–RNA interactions for Protein: Q99829

CPNE1, Copine-1, humanhuman

Predictions only

Length 537 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1Q99829 TCF15-201ENST00000246080 1555 ntAPPRIS P1 TSL 1 (best) BASIC33.72■■■□□ 2.99
CPNE1Q99829 FBLL1-201ENST00000338333 1519 ntAPPRIS P1 BASIC33.46■■■□□ 2.95
CPNE1Q99829 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC33.16■■■□□ 2.9
CPNE1Q99829 AL356512.1-201ENST00000607453 1739 ntBASIC33.04■■■□□ 2.88
CPNE1Q99829 HES6-203ENST00000409160 1600 ntTSL 2 BASIC33.02■■■□□ 2.88
CPNE1Q99829 CSNK1E-204ENST00000403904 1580 ntAPPRIS P1 TSL 5 BASIC32.83■■■□□ 2.85
CPNE1Q99829 PRR5-217ENST00000617066 1726 ntTSL 5 BASIC32.68■■■□□ 2.82
CPNE1Q99829 AC116565.1-201ENST00000610212 2421 ntAPPRIS P1 BASIC32.59■■■□□ 2.81
CPNE1Q99829 AES-202ENST00000327141 1608 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
CPNE1Q99829 PRR5-216ENST00000611394 1843 ntTSL 2 BASIC32.33■■■□□ 2.77
CPNE1Q99829 PPP1CA-203ENST00000376745 1476 ntAPPRIS P1 TSL 1 (best) BASIC32.23■■■□□ 2.75
CPNE1Q99829 PHF10-201ENST00000339209 1719 ntAPPRIS P4 TSL 1 (best) BASIC32.06■■■□□ 2.72
CPNE1Q99829 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.87■■■□□ 2.69
CPNE1Q99829 CYHR1-209ENST00000530374 1870 ntTSL 3 BASIC31.76■■■□□ 2.67
CPNE1Q99829 FAM149A-205ENST00000502970 1990 ntAPPRIS P2 TSL 5 BASIC31.68■■■□□ 2.66
CPNE1Q99829 PTF1A-201ENST00000376504 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CPNE1Q99829 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC31.48■■■□□ 2.63
CPNE1Q99829 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CPNE1Q99829 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CPNE1Q99829 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC31.43■■■□□ 2.62
CPNE1Q99829 SSSCA1-205ENST00000527920 806 ntTSL 3 BASIC31.42■■■□□ 2.62
CPNE1Q99829 ZFYVE21-201ENST00000216602 1521 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
CPNE1Q99829 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.28■■■□□ 2.6
CPNE1Q99829 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC31.2■■■□□ 2.59
CPNE1Q99829 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC31.13■■■□□ 2.57
CPNE1Q99829 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC31.04■■■□□ 2.56
CPNE1Q99829 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC31.02■■■□□ 2.56
CPNE1Q99829 MPND-207ENST00000599840 1611 ntAPPRIS ALT2 TSL 5 BASIC30.94■■■□□ 2.54
CPNE1Q99829 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.76■■■□□ 2.51
CPNE1Q99829 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC30.74■■■□□ 2.51
CPNE1Q99829 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
CPNE1Q99829 OLFM1-208ENST00000392991 1057 ntTSL 2 BASIC30.7■■■□□ 2.51
CPNE1Q99829 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC30.69■■■□□ 2.5
CPNE1Q99829 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC30.67■■■□□ 2.5
CPNE1Q99829 HRAS-203ENST00000397596 1100 ntAPPRIS P1 TSL 3 BASIC30.65■■■□□ 2.5
CPNE1Q99829 MPND-201ENST00000262966 1567 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
CPNE1Q99829 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC30.57■■■□□ 2.48
CPNE1Q99829 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
CPNE1Q99829 METRNL-201ENST00000320095 1605 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CPNE1Q99829 TAF5L-202ENST00000366674 492 ntTSL 3 BASIC30.39■■■□□ 2.46
CPNE1Q99829 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.32■■■□□ 2.44
CPNE1Q99829 ANKRD60-201ENST00000457363 1038 ntAPPRIS P1 TSL 5 BASIC30.3■■■□□ 2.44
CPNE1Q99829 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.29■■■□□ 2.44
CPNE1Q99829 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.27■■■□□ 2.44
CPNE1Q99829 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CPNE1Q99829 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CPNE1Q99829 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.03■■■□□ 2.4
CPNE1Q99829 ILK-212ENST00000532063 1617 ntTSL 2 BASIC29.99■■■□□ 2.39
CPNE1Q99829 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC29.98■■■□□ 2.39
CPNE1Q99829 PPP2CB-204ENST00000518564 691 ntTSL 3 BASIC29.97■■■□□ 2.39
CPNE1Q99829 CSNK1E-206ENST00000413574 1631 ntTSL 5 BASIC29.96■■■□□ 2.39
CPNE1Q99829 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC29.95■■■□□ 2.38
CPNE1Q99829 HAPLN2-201ENST00000255039 1771 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
CPNE1Q99829 MAPK3-202ENST00000322266 1743 ntTSL 5 BASIC29.87■■■□□ 2.37
CPNE1Q99829 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC29.84■■■□□ 2.37
CPNE1Q99829 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
CPNE1Q99829 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
CPNE1Q99829 LMO2-202ENST00000395833 1687 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
CPNE1Q99829 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC29.69■■■□□ 2.34
CPNE1Q99829 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC29.63■■■□□ 2.33
CPNE1Q99829 C11orf68-202ENST00000449692 1559 ntAPPRIS P3 TSL 1 (best) BASIC29.53■■■□□ 2.32
CPNE1Q99829 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC29.52■■■□□ 2.32
CPNE1Q99829 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC29.51■■■□□ 2.31
CPNE1Q99829 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
CPNE1Q99829 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
CPNE1Q99829 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC29.42■■■□□ 2.3
CPNE1Q99829 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
CPNE1Q99829 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC29.42■■■□□ 2.3
CPNE1Q99829 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC29.38■■■□□ 2.29
CPNE1Q99829 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
CPNE1Q99829 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC29.31■■■□□ 2.28
CPNE1Q99829 INO80B-201ENST00000233331 1261 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CPNE1Q99829 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC29.3■■■□□ 2.28
CPNE1Q99829 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC29.29■■■□□ 2.28
CPNE1Q99829 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
CPNE1Q99829 TPRG1L-201ENST00000344579 2189 ntTSL 1 (best) BASIC29.22■■■□□ 2.27
CPNE1Q99829 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CPNE1Q99829 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CPNE1Q99829 AC145285.7-201ENST00000614819 1539 ntBASIC29.15■■■□□ 2.26
CPNE1Q99829 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
CPNE1Q99829 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.13■■■□□ 2.25
CPNE1Q99829 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
CPNE1Q99829 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC29.1■■■□□ 2.25
CPNE1Q99829 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
CPNE1Q99829 INO80B-203ENST00000409917 796 ntTSL 2 BASIC29.08■■■□□ 2.25
CPNE1Q99829 HAGHL-201ENST00000341413 1701 ntTSL 2 BASIC29.08■■■□□ 2.25
CPNE1Q99829 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
CPNE1Q99829 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC29.04■■■□□ 2.24
CPNE1Q99829 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC29.04■■■□□ 2.24
CPNE1Q99829 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC29.01■■■□□ 2.23
CPNE1Q99829 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC29.01■■■□□ 2.23
CPNE1Q99829 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC28.99■■■□□ 2.23
CPNE1Q99829 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
CPNE1Q99829 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC28.94■■■□□ 2.22
CPNE1Q99829 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
CPNE1Q99829 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
CPNE1Q99829 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
CPNE1Q99829 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC28.91■■■□□ 2.22
CPNE1Q99829 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC28.91■■■□□ 2.22
CPNE1Q99829 CDV3-203ENST00000431519 955 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 9.7 ms