Protein–RNA interactions for Protein: P53999

SUB1, Activated RNA polymerase II transcriptional coactivator p15, humanhuman

Known RBP eCLIP

Length 127 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUB1P53999 NCOA4-202ENST00000579039 2211 ntTSL 2 BASIC8.17□□□□□ -1.13e-9■■■■□ 23.7
SUB1P53999 VAT1-207ENST00000589828 521 ntTSL 25.43□□□□□ -1.543e-9■■■■□ 23.7
SUB1P53999 OGT-207ENST00000466181 421 ntTSL 52□□□□□ -2.092e-6■■■■□ 23.7
SUB1P53999 PHB-213ENST00000513412 650 ntTSL 28.13□□□□□ -1.113e-7■■■■□ 23.7
SUB1P53999 IDH3B-210ENST00000491065 823 ntTSL 212.17□□□□□ -0.466e-7■■■■□ 23.7
SUB1P53999 IDH3B-203ENST00000462967 959 ntTSL 211.81□□□□□ -0.526e-7■■■■□ 23.7
SUB1P53999 IDH3B-212ENST00000613370 1400 ntTSL 1 (best) BASIC11.48□□□□□ -0.576e-7■■■■□ 23.7
SUB1P53999 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC19.93■□□□□ 0.788e-8■■■■□ 23.7
SUB1P53999 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.778e-8■■■■□ 23.7
SUB1P53999 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.142e-6■■■■□ 23.7
SUB1P53999 AGAP3-226ENST00000622464 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC10.4□□□□□ -0.742e-6■■■■□ 23.7
SUB1P53999 AGAP3-205ENST00000463381 2730 ntTSL 2 BASIC10.4□□□□□ -0.742e-6■■■■□ 23.7
SUB1P53999 SAT1-203ENST00000379254 868 ntTSL 3 BASIC10.88□□□□□ -0.674e-15■■■■□ 23.7
SUB1P53999 SAT1-204ENST00000379270 1065 ntAPPRIS P1 TSL 1 (best) BASIC10.88□□□□□ -0.674e-15■■■■□ 23.7
SUB1P53999 SAT1-209ENST00000489394 1135 ntTSL 28.25□□□□□ -1.094e-15■■■■□ 23.7
SUB1P53999 SAT1-206ENST00000463236 735 ntTSL 34.79□□□□□ -1.644e-15■■■■□ 23.7
SUB1P53999 SAT1-207ENST00000474223 1033 ntTSL 24.17□□□□□ -1.744e-15■■■■□ 23.7
SUB1P53999 SAT1-205ENST00000462639 826 ntTSL 22.25□□□□□ -2.054e-15■■■■□ 23.7
SUB1P53999 PSMB1-201ENST00000262193 928 ntAPPRIS P1 TSL 1 (best) BASIC8.51□□□□□ -1.055e-7■■■■□ 23.7
SUB1P53999 SNHG7-202ENST00000416970 789 ntTSL 1 (best)18.53■□□□□ 0.566e-9■■■■□ 23.7
SUB1P53999 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC17.53■□□□□ 0.46e-9■■■■□ 23.7
SUB1P53999 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC12.6□□□□□ -0.396e-9■■■■□ 23.7
SUB1P53999 AURKB-210ENST00000583124 323 ntTSL 311.87□□□□□ -0.516e-9■■■■□ 23.7
SUB1P53999 MKRN2-201ENST00000170447 2848 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.566e-9■■■■□ 23.7
SUB1P53999 MKRN2-203ENST00000448482 1679 ntTSL 5 BASIC10.61□□□□□ -0.716e-9■■■■□ 23.7
SUB1P53999 AURKB-211ENST00000583915 397 ntTSL 210.08□□□□□ -0.86e-9■■■■□ 23.7
SUB1P53999 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC9.84□□□□□ -0.836e-9■■■■□ 23.7
SUB1P53999 AURKB-212ENST00000584561 1010 ntTSL 38.44□□□□□ -1.066e-9■■■■□ 23.7
SUB1P53999 AURKB-208ENST00000581511 742 ntTSL 56.05□□□□□ -1.446e-9■■■■□ 23.7
SUB1P53999 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.152e-6■■■■□ 23.7
SUB1P53999 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.172e-6■■■■□ 23.7
SUB1P53999 EPB41L4A-AS1-202ENST00000427306 1367 ntTSL 218.35■□□□□ 0.531e-8■■■■□ 23.7
SUB1P53999 EPB41L4A-AS1-203ENST00000442823 578 ntTSL 212.99□□□□□ -0.331e-8■■■■□ 23.7
SUB1P53999 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC12.65□□□□□ -0.381e-8■■■■□ 23.7
SUB1P53999 EPB41L4A-AS1-204ENST00000508590 292 ntTSL 310.88□□□□□ -0.671e-8■■■■□ 23.7
SUB1P53999 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC3.68□□□□□ -1.829e-7■■■■□ 23.7
SUB1P53999 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC10.77□□□□□ -0.695e-13■■■■□ 23.7
SUB1P53999 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC10.63□□□□□ -0.715e-13■■■■□ 23.7
SUB1P53999 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC10.59□□□□□ -0.715e-13■■■■□ 23.7
SUB1P53999 HMBS-210ENST00000539045 845 ntTSL 27.3□□□□□ -1.241e-7■■■■□ 23.6
SUB1P53999 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC4.68□□□□□ -1.662e-17■■■■□ 23.6
SUB1P53999 PKD1-203ENST00000423118 14135 ntAPPRIS ALT2 TSL 1 (best) BASIC9.36□□□□□ -0.911e-6■■■■□ 23.6
SUB1P53999 PKD1-201ENST00000262304 14138 ntAPPRIS P3 TSL 1 (best) BASIC9.36□□□□□ -0.911e-6■■■■□ 23.6
SUB1P53999 TXNRD1-214ENST00000526691 3974 ntTSL 1 (best) BASIC10.99□□□□□ -0.659e-8■■■■□ 23.6
SUB1P53999 TXNRD1-202ENST00000388854 4277 ntTSL 5 BASIC10.91□□□□□ -0.669e-8■■■■□ 23.6
SUB1P53999 TXNRD1-201ENST00000354940 4082 ntAPPRIS ALT1 TSL 5 BASIC10.21□□□□□ -0.779e-8■■■■□ 23.6
SUB1P53999 TXNRD1-217ENST00000527688 3858 ntTSL 28.71□□□□□ -1.029e-8■■■■□ 23.6
SUB1P53999 TXNRD1-204ENST00000429002 3855 ntTSL 5 BASIC7.37□□□□□ -1.239e-8■■■■□ 23.6
SUB1P53999 TXNRD1-208ENST00000525566 3836 ntTSL 1 (best) BASIC7.12□□□□□ -1.279e-8■■■■□ 23.6
SUB1P53999 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC5.9□□□□□ -1.469e-8■■■■□ 23.6
SUB1P53999 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC5.68□□□□□ -1.59e-8■■■■□ 23.6
SUB1P53999 TXNRD1-212ENST00000526390 3808 ntTSL 5 BASIC5.07□□□□□ -1.69e-8■■■■□ 23.6
SUB1P53999 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.125e-11■■■■□ 23.6
SUB1P53999 CALM3-205ENST00000486500 2536 ntTSL 210.23□□□□□ -0.775e-11■■■■□ 23.6
SUB1P53999 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.134e-9■■■■□ 23.6
SUB1P53999 HARS-201ENST00000307633 1780 ntTSL 2 BASIC14.24□□□□□ -0.134e-9■■■■□ 23.6
SUB1P53999 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.24□□□□□ -0.294e-9■■■■□ 23.6
SUB1P53999 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.18□□□□□ -0.34e-9■■■■□ 23.6
SUB1P53999 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC12.25□□□□□ -0.454e-9■■■■□ 23.6
SUB1P53999 BCAS2-202ENST00000485021 891 ntTSL 211.91□□□□□ -0.54e-9■■■■□ 23.6
SUB1P53999 EIF3A-201ENST00000369144 6646 ntAPPRIS P1 TSL 1 (best) BASIC11.7□□□□□ -0.544e-9■■■■□ 23.6
SUB1P53999 PPP6C-203ENST00000451402 4349 ntTSL 2 BASIC11.5□□□□□ -0.574e-9■■■■□ 23.6
SUB1P53999 CFAP20-203ENST00000562622 1605 ntTSL 511.2□□□□□ -0.624e-9■■■■□ 23.6
SUB1P53999 PPP6C-202ENST00000415905 4172 ntTSL 2 BASIC10.72□□□□□ -0.694e-9■■■■□ 23.6
SUB1P53999 EIF3A-203ENST00000541549 4495 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.714e-9■■■■□ 23.6
SUB1P53999 HARS-207ENST00000504156 3334 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.744e-9■■■■□ 23.6
SUB1P53999 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC10.31□□□□□ -0.764e-9■■■■□ 23.6
SUB1P53999 CFAP20-201ENST00000262498 1354 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.94e-9■■■■□ 23.6
SUB1P53999 HARS-208ENST00000504366 3494 ntTSL 2 BASIC8.24□□□□□ -1.094e-9■■■■□ 23.6
SUB1P53999 NARS-210ENST00000589314 1036 ntTSL 57.05□□□□□ -1.284e-9■■■■□ 23.6
SUB1P53999 PPP6C-201ENST00000373547 4118 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.414e-9■■■■□ 23.6
SUB1P53999 RIDA-203ENST00000519608 771 ntTSL 24.45□□□□□ -1.74e-9■■■■□ 23.6
SUB1P53999 FAM216A-204ENST00000547539 1384 ntTSL 24.26□□□□□ -1.734e-9■■■■□ 23.6
SUB1P53999 FAM216A-203ENST00000546396 792 ntTSL 54.15□□□□□ -1.754e-9■■■■□ 23.6
SUB1P53999 SSR3-205ENST00000467789 1039 ntTSL 2 BASIC7.75□□□□□ -1.176e-10■■■■□ 23.6
SUB1P53999 ATP1A1-201ENST00000295598 3654 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.761e-6■■■■□ 23.5
SUB1P53999 ATP1A1-211ENST00000537345 3763 ntAPPRIS ALT1 TSL 2 BASIC9.02□□□□□ -0.971e-6■■■■□ 23.5
SUB1P53999 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC5.48□□□□□ -1.531e-6■■■■□ 23.5
SUB1P53999 OSTC-202ENST00000505745 628 ntTSL 57.64□□□□□ -1.197e-19■■■■□ 23.5
SUB1P53999 HNRNPM-205ENST00000596295 910 ntTSL 313.65□□□□□ -0.221e-12■■■■□ 23.5
SUB1P53999 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC16.2■□□□□ 0.182e-10■■■■□ 23.4
SUB1P53999 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.112e-10■■■■□ 23.4
SUB1P53999 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC14.42□□□□□ -0.12e-10■■■■□ 23.4
SUB1P53999 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC14.23□□□□□ -0.132e-10■■■■□ 23.4
SUB1P53999 CAPRIN1-212ENST00000532820 3438 ntAPPRIS P4 TSL 1 (best) BASIC10.72□□□□□ -0.692e-6■■■■□ 23.4
SUB1P53999 RHOA-204ENST00000431929 539 ntTSL 413.96□□□□□ -0.171e-9■■■■□ 23.4
SUB1P53999 COPA-202ENST00000368069 4664 ntTSL 1 (best) BASIC10.17□□□□□ -0.787e-8■■■■□ 23.4
SUB1P53999 COPA-201ENST00000241704 4789 ntAPPRIS P1 TSL 1 (best) BASIC9.55□□□□□ -0.887e-8■■■■□ 23.4
SUB1P53999 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC5.35□□□□□ -1.553e-12■■■■□ 23.4
SUB1P53999 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC4.84□□□□□ -1.633e-12■■■■□ 23.4
SUB1P53999 GYPA-202ENST00000360771 2659 ntAPPRIS P3 TSL 1 (best) BASIC2.93□□□□□ -1.943e-12■■■■□ 23.4
SUB1P53999 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC2.57□□□□□ -23e-12■■■■□ 23.4
SUB1P53999 GYPA-207ENST00000510771 709 ntTSL 31.9□□□□□ -2.113e-12■■■■□ 23.4
SUB1P53999 RPL39-202ENST00000468844 1915 ntTSL 1 (best)13.72□□□□□ -0.216e-17■■■■□ 23.4
SUB1P53999 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.866e-17■■■■□ 23.4
SUB1P53999 RPL39-203ENST00000477403 405 ntTSL 32.76□□□□□ -1.976e-17■■■■□ 23.4
SUB1P53999 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.334e-16■■■■□ 23.4
SUB1P53999 RAC2-204ENST00000406508 893 ntTSL 5 BASIC11.61□□□□□ -0.554e-16■■■■□ 23.4
SUB1P53999 SRP72-201ENST00000342756 3983 ntAPPRIS P1 TSL 1 (best) BASIC9.26□□□□□ -0.931e-8■■■■□ 23.3
SUB1P53999 SRP72-204ENST00000507126 2181 ntTSL 1 (best)2.61□□□□□ -1.991e-8■■■■□ 23.3
Retrieved 100 of 11,644 protein–RNA pairs in 126.8 ms