RNA–Protein interactions for RNA: ENST00000397238.6

AGAP3-202, Transcript of ArfGAP with GTPase domain, ankyrin repeat and PH domain 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene AGAP3, Length 3,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AGAP3-202ENST00000397238 NISCHQ9Y2I1 1504 aa38.8■■■■□ 3.8
AGAP3-202ENST00000397238 SHROOM4Q9ULL8 1493 aa34.21■■■■□ 3.07
AGAP3-202ENST00000397238 SUPT5HO00267 1087 aaKnown RBP33.94■■■■□ 3.02
AGAP3-202ENST00000397238 DCAF8L2P0C7V8 631 aa33.3■■■□□ 2.92
AGAP3-202ENST00000397238 HRCP23327 699 aa33.14■■■□□ 2.9
AGAP3-202ENST00000397238 PCGF6Q9BYE7 350 aa33.04■■■□□ 2.88
AGAP3-202ENST00000397238 CHIC1Q5VXU3 224 aa32.89■■■□□ 2.86
AGAP3-202ENST00000397238 MYO15BQ96JP2 1530 aa32.88■■■□□ 2.85
AGAP3-202ENST00000397238 PPARGC1BQ86YN6 1023 aaKnown RBP32.83■■■□□ 2.85
AGAP3-202ENST00000397238 CCDC180Q9P1Z9 1646 aa32.77■■■□□ 2.84
AGAP3-202ENST00000397238 ZCCHC6Q5VYS8 1495 aaKnown RBP32.66■■■□□ 2.82
AGAP3-202ENST00000397238 LOC105371045A0A1W2PR82 267 aa32.35■■■□□ 2.77
AGAP3-202ENST00000397238 TRIM26Q12899 539 aaPredicted RBP31.81■■■□□ 2.68
AGAP3-202ENST00000397238 DCAF1Q9Y4B6 1507 aa31.8■■■□□ 2.68
AGAP3-202ENST00000397238 EHMT2Q96KQ7 1210 aa31.6■■■□□ 2.65
AGAP3-202ENST00000397238 FAM9AQ8IZU1 332 aaPredicted RBP31.5■■■□□ 2.63
AGAP3-202ENST00000397238 ABCC9O60706 1549 aa31.41■■■□□ 2.62
AGAP3-202ENST00000397238 ZEB1P37275 1124 aaPredicted RBP31.28■■■□□ 2.6
AGAP3-202ENST00000397238 TRIM41Q8WV44 630 aa31.27■■■□□ 2.6
AGAP3-202ENST00000397238 SCRIBQ14160 1630 aa31.21■■■□□ 2.59
AGAP3-202ENST00000397238 SCAF1Q9H7N4 1312 aaKnown RBP31.2■■■□□ 2.58
AGAP3-202ENST00000397238 PELP1Q8IZL8 1130 aaKnown RBP31.05■■■□□ 2.56
AGAP3-202ENST00000397238 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.8■■■□□ 2.52
AGAP3-202ENST00000397238 RSF1Q96T23 1441 aaPredicted RBP30.76■■■□□ 2.52
AGAP3-202ENST00000397238 CCER1Q8TC90 406 aaPredicted RBP30.69■■■□□ 2.5
AGAP3-202ENST00000397238 TTBK1Q5TCY1 1321 aaPredicted RBP30.69■■■□□ 2.5
AGAP3-202ENST00000397238 NEUROD1Q13562 356 aa30.58■■■□□ 2.49
AGAP3-202ENST00000397238 NACADO15069 1562 aa30.58■■■□□ 2.49
AGAP3-202ENST00000397238 RB1CC1Q8TDY2 1594 aa30.56■■■□□ 2.48
AGAP3-202ENST00000397238 CECR2Q9BXF3 1484 aa30.54■■■□□ 2.48
AGAP3-202ENST00000397238 ACIN1Q9UKV3 1341 aaKnown RBP30.53■■■□□ 2.48
AGAP3-202ENST00000397238 GTF3C3Q9Y5Q9 886 aa30.42■■■□□ 2.46
AGAP3-202ENST00000397238 DIEXFQ68CQ4 756 aaKnown RBP30.39■■■□□ 2.45
AGAP3-202ENST00000397238 MROH2BQ7Z745 1585 aa30.28■■■□□ 2.44
AGAP3-202ENST00000397238 CENPBP07199 599 aaPredicted RBP30.26■■■□□ 2.43
AGAP3-202ENST00000397238 PABPN1Q86U42 306 aaKnown RBP eCLIP30.24■■■□□ 2.433e-6■■□□□ 13.3
AGAP3-202ENST00000397238 YTHDC1Q96MU7 727 aaKnown RBP30.15■■■□□ 2.42
AGAP3-202ENST00000397238 WIZO95785 1651 aa30.07■■■□□ 2.4
AGAP3-202ENST00000397238 UBTFP17480 764 aaKnown RBP29.84■■■□□ 2.37
AGAP3-202ENST00000397238 ZNF316A6NFI3 1004 aaPredicted RBP29.83■■■□□ 2.37
AGAP3-202ENST00000397238 BAZ1AQ9NRL2 1556 aaPredicted RBP29.79■■■□□ 2.36
AGAP3-202ENST00000397238 HNRNPUL2Q1KMD3 747 aaKnown RBP29.73■■■□□ 2.35
AGAP3-202ENST00000397238 CEP162Q5TB80 1403 aa29.69■■■□□ 2.34
AGAP3-202ENST00000397238 MIER1Q8N108 512 aa29.68■■■□□ 2.34
AGAP3-202ENST00000397238 ABCC8Q09428 1581 aa29.66■■■□□ 2.34
AGAP3-202ENST00000397238 CCDC88BA6NC98 1476 aa29.65■■■□□ 2.34
AGAP3-202ENST00000397238 UNC13AQ9UPW8 1703 aa29.61■■■□□ 2.33
AGAP3-202ENST00000397238 SOGA1O94964 1423 aa29.6■■■□□ 2.33
AGAP3-202ENST00000397238 MYT1Q01538 1121 aa29.59■■■□□ 2.33
AGAP3-202ENST00000397238 SMARCA4P51532 1647 aa29.56■■■□□ 2.32
AGAP3-202ENST00000397238 RANGAP1P46060 587 aaPredicted RBP29.54■■■□□ 2.32
AGAP3-202ENST00000397238 CSRNP3Q8WYN3 585 aa29.52■■■□□ 2.32
AGAP3-202ENST00000397238 WRNQ14191 1432 aaPredicted RBP eCLIP29.5■■■□□ 2.312e-6■■■■■ 28.3
AGAP3-202ENST00000397238 TOP2AP11388 1531 aaKnown RBP29.43■■■□□ 2.3
AGAP3-202ENST00000397238 RUSC2Q8N2Y8 1516 aa29.43■■■□□ 2.3
AGAP3-202ENST00000397238 TNIKQ9UKE5 1360 aa29.43■■■□□ 2.3
AGAP3-202ENST00000397238 BICRAQ9NZM4 1560 aa29.39■■■□□ 2.3
AGAP3-202ENST00000397238 EIF4G1Q04637 1599 aaKnown RBP29.31■■■□□ 2.28
AGAP3-202ENST00000397238 SMARCA2P51531 1590 aa29.3■■■□□ 2.28
AGAP3-202ENST00000397238 APLP2Q06481 763 aa29.26■■■□□ 2.28
AGAP3-202ENST00000397238 GOLGA3Q08378 1498 aa29.12■■■□□ 2.25
AGAP3-202ENST00000397238 EEA1Q15075 1411 aa29.05■■■□□ 2.24
AGAP3-202ENST00000397238 ATAD2BQ9ULI0 1458 aa29.02■■■□□ 2.24
AGAP3-202ENST00000397238 CLIP1P30622 1438 aa29.01■■■□□ 2.24
AGAP3-202ENST00000397238 BAZ1BQ9UIG0 1483 aaKnown RBP29.01■■■□□ 2.23
AGAP3-202ENST00000397238 SUPT16HQ9Y5B9 1047 aaKnown RBP28.94■■■□□ 2.22
AGAP3-202ENST00000397238 CEP164Q9UPV0 1460 aa28.84■■■□□ 2.21
AGAP3-202ENST00000397238 ITGAEP38570 1179 aa28.83■■■□□ 2.21
AGAP3-202ENST00000397238 VPS8Q8N3P4 1428 aa28.82■■■□□ 2.2
AGAP3-202ENST00000397238 PEG3Q9GZU2 1588 aa28.76■■■□□ 2.19
AGAP3-202ENST00000397238 BCANQ96GW7 911 aa28.76■■■□□ 2.19
AGAP3-202ENST00000397238 RAPGEF2Q9Y4G8 1499 aa28.73■■■□□ 2.19
AGAP3-202ENST00000397238 KCNH8Q96L42 1107 aa28.71■■■□□ 2.19
AGAP3-202ENST00000397238 DHX57Q6P158 1386 aaKnown RBP28.69■■■□□ 2.18
AGAP3-202ENST00000397238 KANK4Q5T7N3 995 aaPredicted RBP28.69■■■□□ 2.18
AGAP3-202ENST00000397238 TSHZ2Q9NRE2 1034 aa28.67■■■□□ 2.18
AGAP3-202ENST00000397238 SYNJ1O43426 1573 aa28.67■■■□□ 2.18
AGAP3-202ENST00000397238 KIF21BO75037 1637 aa28.56■■■□□ 2.16
AGAP3-202ENST00000397238 CLSPNQ9HAW4 1339 aa28.53■■■□□ 2.16
AGAP3-202ENST00000397238 FKBP8Q14318 412 aa28.46■■■□□ 2.15
AGAP3-202ENST00000397238 ANP32EQ9BTT0 268 aa28.46■■■□□ 2.15
AGAP3-202ENST00000397238 DDX10Q13206 875 aaKnown RBP28.43■■■□□ 2.14
AGAP3-202ENST00000397238 NCAPD3P42695 1498 aa28.41■■■□□ 2.14
AGAP3-202ENST00000397238 HIRIP3Q9BW71 556 aaPredicted RBP28.39■■■□□ 2.13
AGAP3-202ENST00000397238 SIN3AQ96ST3 1273 aa28.28■■■□□ 2.12
AGAP3-202ENST00000397238 TRIM52Q96A61 297 aa28.28■■■□□ 2.12
AGAP3-202ENST00000397238 ARAP1Q96P48 1450 aa28.27■■■□□ 2.12
AGAP3-202ENST00000397238 CCNB3Q8WWL7 1395 aa28.25■■■□□ 2.11
AGAP3-202ENST00000397238 HMGXB3Q12766 1538 aa28.22■■■□□ 2.11
AGAP3-202ENST00000397238 NEFLP07196 543 aa28.21■■■□□ 2.11
AGAP3-202ENST00000397238 ATP1B4Q9UN42 357 aaPredicted RBP28.21■■■□□ 2.11
AGAP3-202ENST00000397238 TOP2BQ02880 1626 aa28.2■■■□□ 2.11
AGAP3-202ENST00000397238 FAM50AQ14320 339 aaKnown RBP28.19■■■□□ 2.1
AGAP3-202ENST00000397238 RAB3GAP2Q9H2M9 1393 aa28.19■■■□□ 2.1
AGAP3-202ENST00000397238 CUX1P39880 1505 aa28.16■■■□□ 2.1
AGAP3-202ENST00000397238 RRBP1Q9P2E9 1410 aaKnown RBP28.14■■■□□ 2.1
AGAP3-202ENST00000397238 CFTRP13569 1480 aa28.13■■■□□ 2.09
AGAP3-202ENST00000397238 BCL11AQ9H165 835 aa28.11■■■□□ 2.09
AGAP3-202ENST00000397238 RBM19Q9Y4C8 960 aaKnown RBP28.1■■■□□ 2.09
AGAP3-202ENST00000397238 KIF27Q86VH2 1401 aa28.08■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms