RNA–Protein interactions for RNA: ENST00000361575.3

RPL39-201, Transcript of ribosomal protein L39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPL39, Length 401 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPL39-201ENST00000361575 CHIC1Q5VXU3 224 aa20.3■□□□□ 0.84
RPL39-201ENST00000361575 AEBP2Q6ZN18 517 aaPredicted RBP20.3■□□□□ 0.84
RPL39-201ENST00000361575 PHF23Q9BUL5 403 aaPredicted RBP18.01■□□□□ 0.47
RPL39-201ENST00000361575 SENP3Q9H4L4 574 aaPredicted RBP16.96■□□□□ 0.31
RPL39-201ENST00000361575 PLPPR3Q6T4P5 718 aa16.68■□□□□ 0.26
RPL39-201ENST00000361575 FOXD1Q16676 465 aa15.77■□□□□ 0.12
RPL39-201ENST00000361575 ADRA2BP18089 450 aa15.76■□□□□ 0.11
RPL39-201ENST00000361575 PPP6R1Q9UPN7 881 aa15.7■□□□□ 0.1
RPL39-201ENST00000361575 KCNA4P22459 653 aa15.21■□□□□ 0.03
RPL39-201ENST00000361575 PIAS4Q8N2W9 510 aaPredicted RBP14.94□□□□□ -0.02
RPL39-201ENST00000361575 PPP4R3CPQ6ZMV5 832 aa14.81□□□□□ -0.04
RPL39-201ENST00000361575 EHMT2Q96KQ7 1210 aa14.81□□□□□ -0.04
RPL39-201ENST00000361575 SLC4A1APQ9BWU0 796 aaKnown RBP14.51□□□□□ -0.09
RPL39-201ENST00000361575 NCBP3Q53F19 620 aaKnown RBP14.48□□□□□ -0.09
RPL39-201ENST00000361575 NPM3O75607 178 aaKnown RBP14.43□□□□□ -0.1
RPL39-201ENST00000361575 CSRNP3Q8WYN3 585 aa14.43□□□□□ -0.1
RPL39-201ENST00000361575 CNKSR2Q8WXI2 1034 aa14.23□□□□□ -0.13
RPL39-201ENST00000361575 MSH5O43196 834 aa14.18□□□□□ -0.14
RPL39-201ENST00000361575 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.15
RPL39-201ENST00000361575 ZBTB22O15209 634 aa14.09□□□□□ -0.15
RPL39-201ENST00000361575 MAPK8IP2Q13387 824 aaPredicted RBP14.07□□□□□ -0.16
RPL39-201ENST00000361575 DNAJC5BQ9UF47 199 aa13.91□□□□□ -0.18
RPL39-201ENST00000361575 RNF216Q9NWF9 866 aaPredicted RBP13.82□□□□□ -0.2
RPL39-201ENST00000361575 FOXD4L1Q9NU39 408 aa13.75□□□□□ -0.21
RPL39-201ENST00000361575 DMRT2Q9Y5R5 561 aa13.69□□□□□ -0.22
RPL39-201ENST00000361575 HOXD11P31277 338 aaPredicted RBP13.65□□□□□ -0.22
RPL39-201ENST00000361575 SLC4A2P04920 1241 aa13.53□□□□□ -0.24
RPL39-201ENST00000361575 MYCNP04198 464 aaPredicted RBP13.23□□□□□ -0.29
RPL39-201ENST00000361575 ATXN8OSP0DMR3 200 aa13.18□□□□□ -0.3
RPL39-201ENST00000361575 ATF5Q9Y2D1 282 aaPredicted RBP12.99□□□□□ -0.33
RPL39-201ENST00000361575 DCAF8L1A6NGE4 600 aa12.97□□□□□ -0.33
RPL39-201ENST00000361575 FKBP8Q14318 412 aa12.93□□□□□ -0.34
RPL39-201ENST00000361575 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.91□□□□□ -0.34
RPL39-201ENST00000361575 U3KPZ7 1027 aaPredicted RBP12.9□□□□□ -0.34
RPL39-201ENST00000361575 RTN4Q9NQC3 1192 aaKnown RBP12.89□□□□□ -0.35
RPL39-201ENST00000361575 SAMD1Q6SPF0 538 aaPredicted RBP12.78□□□□□ -0.36
RPL39-201ENST00000361575 AMER1Q5JTC6 1135 aaPredicted RBP12.77□□□□□ -0.37
RPL39-201ENST00000361575 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.75□□□□□ -0.37
RPL39-201ENST00000361575 HNRNPUL2Q1KMD3 747 aaKnown RBP12.75□□□□□ -0.37
RPL39-201ENST00000361575 ZNF219Q9P2Y4 722 aaPredicted RBP12.59□□□□□ -0.39
RPL39-201ENST00000361575 SLC24A1O60721 1099 aa12.53□□□□□ -0.4
RPL39-201ENST00000361575 MKRN4PQ13434 485 aaPredicted RBP12.44□□□□□ -0.42
RPL39-201ENST00000361575 APLP2Q06481 763 aa12.43□□□□□ -0.42
RPL39-201ENST00000361575 SPINK5Q9NQ38 1064 aaPredicted RBP12.36□□□□□ -0.43
RPL39-201ENST00000361575 SPDYE4A6NLX3 237 aa12.33□□□□□ -0.44
RPL39-201ENST00000361575 PROM2Q8N271 834 aa12.31□□□□□ -0.44
RPL39-201ENST00000361575 RNF39Q9H2S5 420 aa12.3□□□□□ -0.44
RPL39-201ENST00000361575 TRHP20396 242 aaPredicted RBP12.28□□□□□ -0.44
RPL39-201ENST00000361575 POLA2Q14181 598 aa12.24□□□□□ -0.45
RPL39-201ENST00000361575 FBXO3Q9UK99 471 aa12.2□□□□□ -0.46
RPL39-201ENST00000361575 FBLN2P98095 1184 aa12.19□□□□□ -0.46
RPL39-201ENST00000361575 CAPN15O75808 1086 aa12.17□□□□□ -0.46
RPL39-201ENST00000361575 VASPP50552 380 aaPredicted RBP12.12□□□□□ -0.47
RPL39-201ENST00000361575 C1QBPQ07021 282 aaKnown RBP12.11□□□□□ -0.47
RPL39-201ENST00000361575 ABCB7O75027 752 aa12.06□□□□□ -0.48
RPL39-201ENST00000361575 IFNLR1Q8IU57 520 aaPredicted RBP12.06□□□□□ -0.48
RPL39-201ENST00000361575 POTEDQ86YR6 584 aa11.98□□□□□ -0.49
RPL39-201ENST00000361575 ZBTB12Q9Y330 459 aaPredicted RBP11.97□□□□□ -0.49
RPL39-201ENST00000361575 DSG3P32926 999 aa11.91□□□□□ -0.5
RPL39-201ENST00000361575 PKD2Q13563 968 aa11.9□□□□□ -0.5
RPL39-201ENST00000361575 OSCARQ8IYS5 282 aa11.84□□□□□ -0.51
RPL39-201ENST00000361575 PLCB2Q00722 1185 aa11.83□□□□□ -0.52
RPL39-201ENST00000361575 SSUH2Q9Y2M2 353 aa11.82□□□□□ -0.52
RPL39-201ENST00000361575 ZNF692Q9BU19 519 aaPredicted RBP11.81□□□□□ -0.52
RPL39-201ENST00000361575 SPDYE2BA6NHP3 402 aa11.76□□□□□ -0.53
RPL39-201ENST00000361575 SPDYE6P0CI01 402 aa11.76□□□□□ -0.53
RPL39-201ENST00000361575 SPDYE2Q495Y8 402 aa11.76□□□□□ -0.53
RPL39-201ENST00000361575 SPOCK2Q92563 424 aa11.72□□□□□ -0.53
RPL39-201ENST00000361575 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
RPL39-201ENST00000361575 PABPN1Q86U42 306 aaKnown RBP eCLIP11.71□□□□□ -0.53
RPL39-201ENST00000361575 STAG3Q9UJ98 1225 aa11.7□□□□□ -0.54
RPL39-201ENST00000361575 KLHL34Q8N239 644 aa11.68□□□□□ -0.54
RPL39-201ENST00000361575 HAP1P54257 671 aaPredicted RBP11.62□□□□□ -0.55
RPL39-201ENST00000361575 ECM2O94769 699 aaPredicted RBP11.61□□□□□ -0.55
RPL39-201ENST00000361575 NPM1P06748 294 aaKnown RBP eCLIP11.61□□□□□ -0.55
RPL39-201ENST00000361575 PLCD3Q8N3E9 789 aa11.61□□□□□ -0.55
RPL39-201ENST00000361575 RGL2O15211 777 aa11.57□□□□□ -0.56
RPL39-201ENST00000361575 MIER1Q8N108 512 aa11.57□□□□□ -0.56
RPL39-201ENST00000361575 BBXQ8WY36 941 aaPredicted RBP11.52□□□□□ -0.57
RPL39-201ENST00000361575 CACNB1Q02641 598 aaPredicted RBP11.46□□□□□ -0.57
RPL39-201ENST00000361575 VSIG10Q8N0Z9 540 aa11.46□□□□□ -0.57
RPL39-201ENST00000361575 KDM2AQ9Y2K7 1162 aa11.44□□□□□ -0.58
RPL39-201ENST00000361575 PAXIP1Q6ZW49 1069 aaPredicted RBP11.42□□□□□ -0.58
RPL39-201ENST00000361575 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.42□□□□□ -0.58
RPL39-201ENST00000361575 CIZ1Q9ULV3 898 aaPredicted RBP11.41□□□□□ -0.58
RPL39-201ENST00000361575 ZBTB47Q9UFB7 747 aaPredicted RBP11.39□□□□□ -0.59
RPL39-201ENST00000361575 CFAP44Q96MT7 982 aa11.38□□□□□ -0.59
RPL39-201ENST00000361575 PLEKHG5O94827 1062 aa11.35□□□□□ -0.59
RPL39-201ENST00000361575 RNF25Q96BH1 459 aaPredicted RBP11.35□□□□□ -0.59
RPL39-201ENST00000361575 BCANQ96GW7 911 aa11.34□□□□□ -0.59
RPL39-201ENST00000361575 CHGAP10645 457 aaKnown RBP11.33□□□□□ -0.6
RPL39-201ENST00000361575 NUBP1P53384 320 aa11.33□□□□□ -0.6
RPL39-201ENST00000361575 TSHZ2Q9NRE2 1034 aa11.31□□□□□ -0.6
RPL39-201ENST00000361575 SPRYD3Q8NCJ5 442 aa11.3□□□□□ -0.6
RPL39-201ENST00000361575 TRIM41Q8WV44 630 aa11.29□□□□□ -0.6
RPL39-201ENST00000361575 MNX1P50219 401 aaPredicted RBP11.27□□□□□ -0.61
RPL39-201ENST00000361575 HS6ST3Q8IZP7 471 aa11.27□□□□□ -0.61
RPL39-201ENST00000361575 PRKCSHP14314 528 aaPredicted RBP11.26□□□□□ -0.61
RPL39-201ENST00000361575 CREBZFQ9NS37 354 aa11.26□□□□□ -0.61
RPL39-201ENST00000361575 SPDYE1Q8NFV5 336 aaPredicted RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms