RNA–Protein interactions for RNA: ENST00000617470.4

SDHA-220, Transcript of succinate dehydrogenase complex flavoprotein subunit A, humanhuman

TSL 5 BASIC

Gene SDHA, Length 1,952 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDHA-220ENST00000617470 NISCHQ9Y2I1 1504 aa47.45■■■■■ 5.19
SDHA-220ENST00000617470 CCDC180Q9P1Z9 1646 aa41.79■■■■■ 4.28
SDHA-220ENST00000617470 ABCC9O60706 1549 aa40.38■■■■■ 4.06
SDHA-220ENST00000617470 ZCCHC6Q5VYS8 1495 aaKnown RBP39.67■■■■□ 3.94
SDHA-220ENST00000617470 DCAF8L2P0C7V8 631 aa39.63■■■■□ 3.93
SDHA-220ENST00000617470 DCAF1Q9Y4B6 1507 aa39.2■■■■□ 3.87
SDHA-220ENST00000617470 NACADO15069 1562 aa39.15■■■■□ 3.86
SDHA-220ENST00000617470 MYO15BQ96JP2 1530 aa39.07■■■■□ 3.85
SDHA-220ENST00000617470 RB1CC1Q8TDY2 1594 aa39.05■■■■□ 3.84
SDHA-220ENST00000617470 SCRIBQ14160 1630 aa38.35■■■■□ 3.73
SDHA-220ENST00000617470 SHROOM4Q9ULL8 1493 aa38.16■■■■□ 3.7
SDHA-220ENST00000617470 UNC13AQ9UPW8 1703 aa38.16■■■■□ 3.7
SDHA-220ENST00000617470 PABPN1Q86U42 306 aaKnown RBP eCLIP37.92■■■■□ 3.66
SDHA-220ENST00000617470 BICRAQ9NZM4 1560 aa37.83■■■■□ 3.65
SDHA-220ENST00000617470 CECR2Q9BXF3 1484 aa36.95■■■■□ 3.51
SDHA-220ENST00000617470 EIF4G1Q04637 1599 aaKnown RBP36.8■■■■□ 3.48
SDHA-220ENST00000617470 BAZ1AQ9NRL2 1556 aaPredicted RBP36.73■■■■□ 3.47
SDHA-220ENST00000617470 SMARCA4P51532 1647 aa36.67■■■■□ 3.46
SDHA-220ENST00000617470 MROH2BQ7Z745 1585 aa36.63■■■■□ 3.45
SDHA-220ENST00000617470 CC2D2AQ9P2K1 1620 aa36.49■■■■□ 3.43
SDHA-220ENST00000617470 RSF1Q96T23 1441 aaPredicted RBP36.47■■■■□ 3.43
SDHA-220ENST00000617470 DNAJC5BQ9UF47 199 aa36.4■■■■□ 3.42
SDHA-220ENST00000617470 ATAD2BQ9ULI0 1458 aa36.29■■■■□ 3.4
SDHA-220ENST00000617470 SUPT5HO00267 1087 aaKnown RBP36.29■■■■□ 3.4
SDHA-220ENST00000617470 WIZO95785 1651 aa36.29■■■■□ 3.4
SDHA-220ENST00000617470 SMARCA2P51531 1590 aa36.27■■■■□ 3.4
SDHA-220ENST00000617470 PEG3Q9GZU2 1588 aa36.22■■■■□ 3.39
SDHA-220ENST00000617470 NCAPD3P42695 1498 aa36.13■■■■□ 3.37
SDHA-220ENST00000617470 BAZ1BQ9UIG0 1483 aaKnown RBP36.08■■■■□ 3.37
SDHA-220ENST00000617470 HMGXB3Q12766 1538 aa36■■■■□ 3.35
SDHA-220ENST00000617470 TOP2AP11388 1531 aaKnown RBP35.89■■■■□ 3.34
SDHA-220ENST00000617470 CCDC88BA6NC98 1476 aa35.51■■■■□ 3.28
SDHA-220ENST00000617470 CADPSQ9ULU8 1353 aa35.17■■■■□ 3.22
SDHA-220ENST00000617470 NESP48681 1621 aa35.15■■■■□ 3.22
SDHA-220ENST00000617470 CFTRP13569 1480 aa35.08■■■■□ 3.21
SDHA-220ENST00000617470 LAMC3Q9Y6N6 1575 aa35.06■■■■□ 3.2
SDHA-220ENST00000617470 PDS5BQ9NTI5 1447 aa34.85■■■■□ 3.17
SDHA-220ENST00000617470 PRDM2Q13029 1718 aa34.82■■■■□ 3.17
SDHA-220ENST00000617470 CHIC1Q5VXU3 224 aa34.8■■■■□ 3.16
SDHA-220ENST00000617470 FANCD2Q9BXW9 1451 aa34.78■■■■□ 3.16
SDHA-220ENST00000617470 ERCC6Q03468 1493 aa34.76■■■■□ 3.16
SDHA-220ENST00000617470 KIF21AQ7Z4S6 1674 aa34.7■■■■□ 3.15
SDHA-220ENST00000617470 CEP164Q9UPV0 1460 aa34.67■■■■□ 3.14
SDHA-220ENST00000617470 ABCC8Q09428 1581 aa34.49■■■■□ 3.11
SDHA-220ENST00000617470 MRC2Q9UBG0 1479 aa34.44■■■■□ 3.1
SDHA-220ENST00000617470 WRNQ14191 1432 aaPredicted RBP eCLIP34.39■■■■□ 3.1
SDHA-220ENST00000617470 URB2Q14146 1524 aaKnown RBP34.38■■■■□ 3.09
SDHA-220ENST00000617470 THOC2Q8NI27 1593 aaKnown RBP34.36■■■■□ 3.09
SDHA-220ENST00000617470 CUX1P39880 1505 aa34.31■■■■□ 3.08
SDHA-220ENST00000617470 TOPBP1Q92547 1522 aa34.3■■■■□ 3.08
SDHA-220ENST00000617470 DNMBPQ6XZF7 1577 aa34.29■■■■□ 3.08
SDHA-220ENST00000617470 WDR62O43379 1518 aa34.26■■■■□ 3.08
SDHA-220ENST00000617470 SYNJ1O43426 1573 aa34.25■■■■□ 3.07
SDHA-220ENST00000617470 TRIM41Q8WV44 630 aa34.18■■■■□ 3.06
SDHA-220ENST00000617470 TOP2BQ02880 1626 aa34.18■■■■□ 3.06
SDHA-220ENST00000617470 BIVM-ERCC5R4GMW8 1640 aa34.14■■■■□ 3.06
SDHA-220ENST00000617470 FGD5Q6ZNL6 1462 aa34.1■■■■□ 3.05
SDHA-220ENST00000617470 POLA1P09884 1462 aaPredicted RBP34.06■■■■□ 3.04
SDHA-220ENST00000617470 CUX2O14529 1486 aa34■■■■□ 3.03
SDHA-220ENST00000617470 SOGA1O94964 1423 aa33.96■■■■□ 3.03
SDHA-220ENST00000617470 RAD54L2Q9Y4B4 1467 aa33.96■■■■□ 3.03
SDHA-220ENST00000617470 IFT140Q96RY7 1462 aa33.88■■■■□ 3.01
SDHA-220ENST00000617470 TARBP1Q13395 1621 aaKnown RBP33.82■■■■□ 3
SDHA-220ENST00000617470 ABCA10Q8WWZ4 1543 aa33.76■■■□□ 2.99
SDHA-220ENST00000617470 TDRD9Q8NDG6 1382 aaKnown RBP33.73■■■□□ 2.99
SDHA-220ENST00000617470 ZNF608Q9ULD9 1512 aaPredicted RBP33.72■■■□□ 2.99
SDHA-220ENST00000617470 WDR97A6NE52 1622 aa33.69■■■□□ 2.98
SDHA-220ENST00000617470 AQRO60306 1485 aaKnown RBP eCLIP33.65■■■□□ 2.981e-7■■■■■ 30.9
SDHA-220ENST00000617470 KIF27Q86VH2 1401 aa33.61■■■□□ 2.97
SDHA-220ENST00000617470 EIF4G3O43432 1585 aaKnown RBP33.58■■■□□ 2.97
SDHA-220ENST00000617470 RUSC2Q8N2Y8 1516 aa33.57■■■□□ 2.96
SDHA-220ENST00000617470 GAPVD1Q14C86 1478 aa33.57■■■□□ 2.96
SDHA-220ENST00000617470 FAM9AQ8IZU1 332 aaPredicted RBP33.56■■■□□ 2.96
SDHA-220ENST00000617470 ABCA5Q8WWZ7 1642 aa33.54■■■□□ 2.96
SDHA-220ENST00000617470 LOC105371045A0A1W2PR82 267 aa33.52■■■□□ 2.96
SDHA-220ENST00000617470 GRIN2BQ13224 1484 aa33.44■■■□□ 2.94
SDHA-220ENST00000617470 PBRM1Q86U86 1689 aa33.42■■■□□ 2.94
SDHA-220ENST00000617470 EEA1Q15075 1411 aa33.4■■■□□ 2.94
SDHA-220ENST00000617470 IGF1RP08069 1367 aa33.38■■■□□ 2.93
SDHA-220ENST00000617470 ERICH3Q5RHP9 1530 aa33.36■■■□□ 2.93
SDHA-220ENST00000617470 CSRNP3Q8WYN3 585 aa33.34■■■□□ 2.93
SDHA-220ENST00000617470 SNAPC4Q5SXM2 1469 aa33.33■■■□□ 2.93
SDHA-220ENST00000617470 MAGI1Q96QZ7 1491 aaPredicted RBP33.25■■■□□ 2.91
SDHA-220ENST00000617470 FBLN2P98095 1184 aa33.22■■■□□ 2.91
SDHA-220ENST00000617470 CARMIL1Q5VZK9 1371 aa33.22■■■□□ 2.91
SDHA-220ENST00000617470 CUL7Q14999 1698 aa33.19■■■□□ 2.9
SDHA-220ENST00000617470 ADAMTS12P58397 1594 aa33.19■■■□□ 2.9
SDHA-220ENST00000617470 FHAD1B1AJZ9 1412 aa33.18■■■□□ 2.9
SDHA-220ENST00000617470 CHMP7Q8WUX9 453 aaPredicted RBP33.17■■■□□ 2.9
SDHA-220ENST00000617470 EHMT2Q96KQ7 1210 aa33.16■■■□□ 2.9
SDHA-220ENST00000617470 SYNJ2O15056 1496 aa33.13■■■□□ 2.89
SDHA-220ENST00000617470 PRXQ9BXM0 1461 aa33.1■■■□□ 2.89
SDHA-220ENST00000617470 RAPGEF2Q9Y4G8 1499 aa33.08■■■□□ 2.89
SDHA-220ENST00000617470 CHD1O14646 1710 aa33.02■■■□□ 2.88
SDHA-220ENST00000617470 GRIN2AQ12879 1464 aa33.01■■■□□ 2.88
SDHA-220ENST00000617470 KIF21BO75037 1637 aa33■■■□□ 2.87
SDHA-220ENST00000617470 GOLGA3Q08378 1498 aa32.92■■■□□ 2.86
SDHA-220ENST00000617470 UBTFP17480 764 aaKnown RBP32.9■■■□□ 2.86
SDHA-220ENST00000617470 OSCARQ8IYS5 282 aa32.83■■■□□ 2.85
SDHA-220ENST00000617470 CEP170Q5SW79 1584 aa32.82■■■□□ 2.84
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms