Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC17.48■□□□□ 0.39
ABCA1O95477 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC17.48■□□□□ 0.39
ABCA1O95477 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA1O95477 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA1O95477 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC17.48■□□□□ 0.39
ABCA1O95477 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
ABCA1O95477 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
ABCA1O95477 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC17.47■□□□□ 0.39
ABCA1O95477 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC17.47■□□□□ 0.39
ABCA1O95477 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ABCA1O95477 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 STK25-234ENST00000535007 2459 ntTSL 2 BASIC17.47■□□□□ 0.39
ABCA1O95477 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC17.47■□□□□ 0.39
ABCA1O95477 AC079089.2-201ENST00000531211 1277 ntBASIC17.47■□□□□ 0.39
ABCA1O95477 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
ABCA1O95477 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC17.47■□□□□ 0.39
ABCA1O95477 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
ABCA1O95477 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
ABCA1O95477 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.46■□□□□ 0.39
ABCA1O95477 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.46■□□□□ 0.39
ABCA1O95477 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC17.46■□□□□ 0.39
ABCA1O95477 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.46■□□□□ 0.39
ABCA1O95477 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.46■□□□□ 0.39
ABCA1O95477 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 RBM17P2-201ENST00000616397 1405 ntBASIC17.46■□□□□ 0.39
ABCA1O95477 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC17.46■□□□□ 0.39
ABCA1O95477 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC17.46■□□□□ 0.39
ABCA1O95477 GATS-209ENST00000454084 1030 ntTSL 3 BASIC17.46■□□□□ 0.39
ABCA1O95477 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC17.46■□□□□ 0.39
ABCA1O95477 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.46■□□□□ 0.39
ABCA1O95477 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
ABCA1O95477 AC233723.2-201ENST00000623798 2106 ntBASIC17.46■□□□□ 0.38
ABCA1O95477 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
ABCA1O95477 AC010980.2-201ENST00000587099 1412 ntBASIC17.46■□□□□ 0.38
ABCA1O95477 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.45■□□□□ 0.38
ABCA1O95477 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.45■□□□□ 0.38
ABCA1O95477 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC17.45■□□□□ 0.38
ABCA1O95477 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.45■□□□□ 0.38
ABCA1O95477 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.45■□□□□ 0.38
ABCA1O95477 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
ABCA1O95477 CASP6-205ENST00000505486 538 ntTSL 4 BASIC17.45■□□□□ 0.38
ABCA1O95477 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
ABCA1O95477 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC17.44■□□□□ 0.38
ABCA1O95477 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
ABCA1O95477 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC17.44■□□□□ 0.38
ABCA1O95477 AC008175.2-201ENST00000612840 297 ntBASIC17.44■□□□□ 0.38
ABCA1O95477 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA1O95477 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA1O95477 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
ABCA1O95477 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
ABCA1O95477 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC17.44■□□□□ 0.38
ABCA1O95477 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.44■□□□□ 0.38
ABCA1O95477 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC17.43■□□□□ 0.38
ABCA1O95477 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC17.43■□□□□ 0.38
ABCA1O95477 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC17.43■□□□□ 0.38
ABCA1O95477 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms