Protein–RNA interactions for Protein: Q8NHQ9

DDX55, ATP-dependent RNA helicase DDX55, humanhuman

Known RBP eCLIP

Length 600 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55Q8NHQ9 ASPH-230ENST00000541428 2550 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.923e-6■■■□□ 15.8
DDX55Q8NHQ9 TMEM2-210ENST00000542935 5372 ntTSL 1 (best)9.1□□□□□ -0.953e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-227ENST00000523897 871 ntTSL 39.02□□□□□ -0.973e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC9.01□□□□□ -0.973e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-209ENST00000517903 2658 ntTSL 1 (best) BASIC8.62□□□□□ -1.033e-6■■■□□ 15.8
DDX55Q8NHQ9 TMEM2-203ENST00000377055 722 ntTSL 38.26□□□□□ -1.093e-6■■■□□ 15.8
DDX55Q8NHQ9 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC8.17□□□□□ -1.12e-6■■■□□ 15.8
DDX55Q8NHQ9 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.133e-6■■■□□ 15.8
DDX55Q8NHQ9 WDR48-201ENST00000302313 3707 ntAPPRIS P1 TSL 1 (best) BASIC7.44□□□□□ -1.221e-8■■■□□ 15.8
DDX55Q8NHQ9 WDR48-208ENST00000466405 4925 ntTSL 1 (best)7.27□□□□□ -1.251e-8■■■□□ 15.8
DDX55Q8NHQ9 ASPH-218ENST00000521499 484 ntTSL 37.09□□□□□ -1.273e-6■■■□□ 15.8
DDX55Q8NHQ9 PET100-203ENST00000598540 375 ntTSL 36.53□□□□□ -1.361e-15■■■□□ 15.8
DDX55Q8NHQ9 ASPH-223ENST00000522349 531 ntTSL 56.52□□□□□ -1.373e-6■■■□□ 15.8
DDX55Q8NHQ9 WDR48-203ENST00000420940 3772 ntTSL 1 (best)6.14□□□□□ -1.431e-8■■■□□ 15.8
DDX55Q8NHQ9 TMEM2-201ENST00000377043 675 ntTSL 25.69□□□□□ -1.53e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-228ENST00000523927 556 ntTSL 45.62□□□□□ -1.513e-6■■■□□ 15.8
DDX55Q8NHQ9 ASPH-229ENST00000524173 587 ntTSL 44.89□□□□□ -1.633e-6■■■□□ 15.8
DDX55Q8NHQ9 TMEM2-208ENST00000537329 581 ntTSL 24.49□□□□□ -1.693e-6■■■□□ 15.8
DDX55Q8NHQ9 ARHGAP4-212ENST00000454164 747 ntTSL 525.36■■□□□ 1.654e-8■■■□□ 15.8
DDX55Q8NHQ9 ARHGAP4-218ENST00000467421 798 ntTSL 224■■□□□ 1.434e-8■■■□□ 15.8
DDX55Q8NHQ9 CTSA-210ENST00000606000 644 ntTSL 315.12■□□□□ 0.011e-21■■■□□ 15.8
DDX55Q8NHQ9 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.51e-6■■■□□ 15.8
DDX55Q8NHQ9 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC15.99■□□□□ 0.151e-6■■■□□ 15.8
DDX55Q8NHQ9 LY6E-205ENST00000519611 635 ntTSL 3 BASIC24.23■■□□□ 1.478e-10■■■□□ 15.8
DDX55Q8NHQ9 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC24.23■■□□□ 1.478e-10■■■□□ 15.8
DDX55Q8NHQ9 LY6E-213ENST00000522528 606 ntTSL 3 BASIC22.65■■□□□ 1.228e-10■■■□□ 15.8
DDX55Q8NHQ9 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC22.33■■□□□ 1.178e-10■■■□□ 15.8
DDX55Q8NHQ9 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.414e-16■■■□□ 15.8
DDX55Q8NHQ9 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.813e-6■■■□□ 15.7
DDX55Q8NHQ9 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.773e-6■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-210ENST00000465814 5612 ntTSL 216.6■□□□□ 0.252e-7■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.122e-7■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.022e-7■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.112e-7■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-211ENST00000495878 2758 ntTSL 1 (best)13.73□□□□□ -0.212e-7■■■□□ 15.7
DDX55Q8NHQ9 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC13.42□□□□□ -0.262e-7■■■□□ 15.7
DDX55Q8NHQ9 ERH-202ENST00000555373 586 ntTSL 2 BASIC14.48□□□□□ -0.099e-17■■■□□ 15.7
DDX55Q8NHQ9 ERH-204ENST00000557697 167 ntTSL 5-0.31□□□□□ -2.469e-17■■■□□ 15.7
DDX55Q8NHQ9 FANCA-206ENST00000561660 762 ntTSL 522.14■■□□□ 1.131e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-201ENST00000305699 1430 ntTSL 219.26■□□□□ 0.671e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-232ENST00000568983 726 ntTSL 215.19■□□□□ 0.021e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-229ENST00000567988 915 ntTSL 515.02■□□□□ -01e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-231ENST00000568626 727 ntTSL 314.22□□□□□ -0.131e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-202ENST00000389301 5451 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.181e-6■■■□□ 15.7
DDX55Q8NHQ9 FANCA-230ENST00000568369 4601 ntAPPRIS ALT2 TSL 2 BASIC11.61□□□□□ -0.551e-6■■■□□ 15.7
DDX55Q8NHQ9 ATXN2L-224ENST00000569318 559 ntTSL 519.4■□□□□ 0.71e-8■■■□□ 15.7
DDX55Q8NHQ9 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC34.22■■■■□ 3.075e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC30.91■■■□□ 2.545e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC30.91■■■□□ 2.545e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC30.03■■■□□ 2.45e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC26.28■■□□□ 1.85e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.585e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.43■■□□□ 1.55e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC23.82■■□□□ 1.45e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC21.45■■□□□ 1.025e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-209ENST00000565777 1313 ntTSL 219.84■□□□□ 0.775e-17■■■□□ 15.6
DDX55Q8NHQ9 MAZ-213ENST00000568411 599 ntTSL 319.63■□□□□ 0.735e-17■■■□□ 15.6
DDX55Q8NHQ9 CTSH-202ENST00000525807 1122 ntTSL 523.34■■□□□ 1.335e-14■■■□□ 15.6
DDX55Q8NHQ9 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.75e-14■■■□□ 15.6
DDX55Q8NHQ9 CLSTN3-202ENST00000331148 2288 ntTSL 1 (best)18.96■□□□□ 0.635e-14■■■□□ 15.6
DDX55Q8NHQ9 CTSH-213ENST00000533777 2101 ntTSL 1 (best)18.36■□□□□ 0.535e-14■■■□□ 15.6
DDX55Q8NHQ9 CTSH-218ENST00000615999 972 ntTSL 1 (best) BASIC16.28■□□□□ 0.25e-14■■■□□ 15.6
DDX55Q8NHQ9 CTSH-215ENST00000534237 691 ntTSL 313.7□□□□□ -0.225e-14■■■□□ 15.6
DDX55Q8NHQ9 CTSH-204ENST00000527715 2138 ntTSL 1 (best)12.77□□□□□ -0.375e-14■■■□□ 15.6
DDX55Q8NHQ9 CLSTN3-201ENST00000266546 4185 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.425e-14■■■□□ 15.6
DDX55Q8NHQ9 CLSTN3-207ENST00000537408 4296 ntAPPRIS ALT2 TSL 1 (best) BASIC11.75□□□□□ -0.535e-14■■■□□ 15.6
DDX55Q8NHQ9 SLC38A2-208ENST00000549258 4384 ntTSL 24.24□□□□□ -1.736e-76■■■□□ 15.6
DDX55Q8NHQ9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC27.96■■■□□ 2.079e-11■■■□□ 15.6
DDX55Q8NHQ9 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.739e-11■■■□□ 15.6
DDX55Q8NHQ9 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC28.61■■■□□ 2.175e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-201ENST00000264258 1865 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.565e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-203ENST00000409028 1110 ntTSL 2 BASIC9.62□□□□□ -0.875e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-206ENST00000409650 770 ntAPPRIS ALT1 TSL 2 BASIC6.08□□□□□ -1.445e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-209ENST00000419276 781 ntTSL 56.07□□□□□ -1.445e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-205ENST00000409320 716 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.455e-8■■■□□ 15.6
DDX55Q8NHQ9 RPL31-204ENST00000409038 817 ntTSL 2 BASIC5.54□□□□□ -1.525e-8■■■□□ 15.6
DDX55Q8NHQ9 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.652e-6■■■□□ 15.6
DDX55Q8NHQ9 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.5■■■□□ 2.632e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-212ENST00000615917 1407 ntTSL 2 BASIC31.26■■■□□ 2.62e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-208ENST00000529812 493 ntTSL 430.88■■■□□ 2.532e-6■■■□□ 15.6
DDX55Q8NHQ9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.432e-6■■■□□ 15.6
DDX55Q8NHQ9 SLC22A31-203ENST00000563595 780 ntTSL 329.87■■■□□ 2.373e-7■■■□□ 15.6
DDX55Q8NHQ9 EI24-202ENST00000524723 837 ntTSL 528.98■■■□□ 2.232e-6■■■□□ 15.6
DDX55Q8NHQ9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC28.7■■■□□ 2.192e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC26.53■■□□□ 1.842e-6■■■□□ 15.6
DDX55Q8NHQ9 SLC22A31-202ENST00000562916 692 ntTSL 526.48■■□□□ 1.833e-7■■■□□ 15.6
DDX55Q8NHQ9 TNRC18-201ENST00000328270 1220 ntTSL 526.37■■□□□ 1.812e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-213ENST00000618552 1747 ntTSL 5 BASIC26.19■■□□□ 1.782e-6■■■□□ 15.6
DDX55Q8NHQ9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.762e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-211ENST00000534546 1544 ntTSL 2 BASIC25.93■■□□□ 1.742e-6■■■□□ 15.6
DDX55Q8NHQ9 ABCD4-202ENST00000460308 1003 ntTSL 1 (best)25.91■■□□□ 1.742e-6■■■□□ 15.6
DDX55Q8NHQ9 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC25.54■■□□□ 1.682e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-207ENST00000529765 801 ntTSL 225.48■■□□□ 1.672e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-206ENST00000527842 815 ntTSL 425.48■■□□□ 1.672e-6■■■□□ 15.6
DDX55Q8NHQ9 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.662e-6■■■□□ 15.6
DDX55Q8NHQ9 LSM6-207ENST00000515311 545 ntTSL 424.81■■□□□ 1.562e-6■■■□□ 15.6
DDX55Q8NHQ9 EI24-210ENST00000531636 1395 ntTSL 224.5■■□□□ 1.512e-6■■■□□ 15.6
DDX55Q8NHQ9 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC23.93■■□□□ 1.427e-15■■■□□ 15.6
DDX55Q8NHQ9 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.72■■□□□ 1.392e-6■■■□□ 15.6
DDX55Q8NHQ9 COL9A2-206ENST00000466267 835 ntTSL 523.6■■□□□ 1.372e-6■■■□□ 15.6
Retrieved 100 of 15,504 protein–RNA pairs in 130.4 ms