RNA–Protein interactions for RNA: ENST00000606000.1

CTSA-210, Transcript of cathepsin A, humanhuman

TSL 3

Gene CTSA, Length 644 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTSA-210ENST00000606000 NISCHQ9Y2I1 1504 aa30.42■■■□□ 2.46
CTSA-210ENST00000606000 CCDC180Q9P1Z9 1646 aa27.16■■□□□ 1.94
CTSA-210ENST00000606000 ABCC9O60706 1549 aa26.8■■□□□ 1.88
CTSA-210ENST00000606000 RB1CC1Q8TDY2 1594 aa25.63■■□□□ 1.69
CTSA-210ENST00000606000 NACADO15069 1562 aa25.52■■□□□ 1.68
CTSA-210ENST00000606000 DCAF8L2P0C7V8 631 aa25.46■■□□□ 1.67
CTSA-210ENST00000606000 ZCCHC6Q5VYS8 1495 aaKnown RBP25.31■■□□□ 1.64
CTSA-210ENST00000606000 MYO15BQ96JP2 1530 aa25.26■■□□□ 1.63
CTSA-210ENST00000606000 UNC13AQ9UPW8 1703 aa25.19■■□□□ 1.62
CTSA-210ENST00000606000 DCAF1Q9Y4B6 1507 aa25.1■■□□□ 1.61
CTSA-210ENST00000606000 PABPN1Q86U42 306 aaKnown RBP eCLIP24.98■■□□□ 1.597e-8■□□□□ 10.4
CTSA-210ENST00000606000 BICRAQ9NZM4 1560 aa24.94■■□□□ 1.58
CTSA-210ENST00000606000 SCRIBQ14160 1630 aa24.83■■□□□ 1.57
CTSA-210ENST00000606000 DNAJC5BQ9UF47 199 aa24.78■■□□□ 1.56
CTSA-210ENST00000606000 SHROOM4Q9ULL8 1493 aa24.51■■□□□ 1.51
CTSA-210ENST00000606000 EIF4G1Q04637 1599 aaKnown RBP24.27■■□□□ 1.48
CTSA-210ENST00000606000 CC2D2AQ9P2K1 1620 aa24.24■■□□□ 1.47
CTSA-210ENST00000606000 CECR2Q9BXF3 1484 aa24.07■■□□□ 1.44
CTSA-210ENST00000606000 SMARCA4P51532 1647 aa23.69■■□□□ 1.38
CTSA-210ENST00000606000 BAZ1AQ9NRL2 1556 aaPredicted RBP23.57■■□□□ 1.36
CTSA-210ENST00000606000 ATAD2BQ9ULI0 1458 aa23.56■■□□□ 1.36
CTSA-210ENST00000606000 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
CTSA-210ENST00000606000 SMARCA2P51531 1590 aa23.5■■□□□ 1.35
CTSA-210ENST00000606000 MROH2BQ7Z745 1585 aa23.49■■□□□ 1.35
CTSA-210ENST00000606000 HMGXB3Q12766 1538 aa23.44■■□□□ 1.34
CTSA-210ENST00000606000 PEG3Q9GZU2 1588 aa23.41■■□□□ 1.34
CTSA-210ENST00000606000 BAZ1BQ9UIG0 1483 aaKnown RBP23.36■■□□□ 1.33
CTSA-210ENST00000606000 WIZO95785 1651 aa23.26■■□□□ 1.31
CTSA-210ENST00000606000 NESP48681 1621 aa23.16■■□□□ 1.3
CTSA-210ENST00000606000 RSF1Q96T23 1441 aaPredicted RBP23.08■■□□□ 1.29
CTSA-210ENST00000606000 ERCC6Q03468 1493 aa23.07■■□□□ 1.28
CTSA-210ENST00000606000 LAMC3Q9Y6N6 1575 aa22.99■■□□□ 1.27
CTSA-210ENST00000606000 TOP2AP11388 1531 aaKnown RBP22.93■■□□□ 1.26
CTSA-210ENST00000606000 KIF21AQ7Z4S6 1674 aa22.92■■□□□ 1.26
CTSA-210ENST00000606000 CUX2O14529 1486 aa22.87■■□□□ 1.25
CTSA-210ENST00000606000 THOC2Q8NI27 1593 aaKnown RBP22.86■■□□□ 1.25
CTSA-210ENST00000606000 CADPSQ9ULU8 1353 aa22.84■■□□□ 1.25
CTSA-210ENST00000606000 PDS5BQ9NTI5 1447 aa22.78■■□□□ 1.24
CTSA-210ENST00000606000 AEBP2Q6ZN18 517 aaPredicted RBP22.69■■□□□ 1.22
CTSA-210ENST00000606000 CFTRP13569 1480 aa22.68■■□□□ 1.22
CTSA-210ENST00000606000 CCDC88BA6NC98 1476 aa22.66■■□□□ 1.22
CTSA-210ENST00000606000 FANCD2Q9BXW9 1451 aa22.63■■□□□ 1.21
CTSA-210ENST00000606000 MRC2Q9UBG0 1479 aa22.63■■□□□ 1.21
CTSA-210ENST00000606000 CEP164Q9UPV0 1460 aa22.62■■□□□ 1.21
CTSA-210ENST00000606000 PRDM2Q13029 1718 aa22.6■■□□□ 1.21
CTSA-210ENST00000606000 WDR62O43379 1518 aa22.59■■□□□ 1.21
CTSA-210ENST00000606000 URB2Q14146 1524 aaKnown RBP22.46■■□□□ 1.19
CTSA-210ENST00000606000 DNAJC5Q9H3Z4 198 aa22.39■■□□□ 1.17
CTSA-210ENST00000606000 SUPT5HO00267 1087 aaKnown RBP22.33■■□□□ 1.17
CTSA-210ENST00000606000 TOPBP1Q92547 1522 aa22.26■■□□□ 1.15
CTSA-210ENST00000606000 DNMBPQ6XZF7 1577 aa22.21■■□□□ 1.15
CTSA-210ENST00000606000 ABCC8Q09428 1581 aa22.14■■□□□ 1.13
CTSA-210ENST00000606000 ZNF608Q9ULD9 1512 aaPredicted RBP22.13■■□□□ 1.13
CTSA-210ENST00000606000 IFT140Q96RY7 1462 aa22.12■■□□□ 1.13
CTSA-210ENST00000606000 TARBP1Q13395 1621 aaKnown RBP22.06■■□□□ 1.12
CTSA-210ENST00000606000 POLA1P09884 1462 aaPredicted RBP22.06■■□□□ 1.12
CTSA-210ENST00000606000 EIF4G3O43432 1585 aaKnown RBP22.06■■□□□ 1.12
CTSA-210ENST00000606000 CUX1P39880 1505 aa22.05■■□□□ 1.12
CTSA-210ENST00000606000 RAD54L2Q9Y4B4 1467 aa21.99■■□□□ 1.11
CTSA-210ENST00000606000 FGD5Q6ZNL6 1462 aa21.98■■□□□ 1.11
CTSA-210ENST00000606000 AQRO60306 1485 aaKnown RBP eCLIP21.94■■□□□ 1.1
CTSA-210ENST00000606000 SOGA1O94964 1423 aa21.91■■□□□ 1.1
CTSA-210ENST00000606000 WDR97A6NE52 1622 aa21.88■■□□□ 1.09
CTSA-210ENST00000606000 TDRD9Q8NDG6 1382 aaKnown RBP21.85■■□□□ 1.09
CTSA-210ENST00000606000 CHD1O14646 1710 aa21.84■■□□□ 1.09
CTSA-210ENST00000606000 OSCARQ8IYS5 282 aa21.83■■□□□ 1.09
CTSA-210ENST00000606000 SYNJ1O43426 1573 aa21.82■■□□□ 1.08
CTSA-210ENST00000606000 BIVM-ERCC5R4GMW8 1640 aa21.8■■□□□ 1.08
CTSA-210ENST00000606000 TOP2BQ02880 1626 aa21.77■■□□□ 1.08
CTSA-210ENST00000606000 WRNQ14191 1432 aaPredicted RBP eCLIP21.76■■□□□ 1.07
CTSA-210ENST00000606000 SNAPC4Q5SXM2 1469 aa21.76■■□□□ 1.07
CTSA-210ENST00000606000 PBRM1Q86U86 1689 aa21.75■■□□□ 1.07
CTSA-210ENST00000606000 ABCA5Q8WWZ7 1642 aa21.73■■□□□ 1.07
CTSA-210ENST00000606000 ABCA10Q8WWZ4 1543 aa21.72■■□□□ 1.07
CTSA-210ENST00000606000 GRIN2BQ13224 1484 aa21.69■■□□□ 1.06
CTSA-210ENST00000606000 GAPVD1Q14C86 1478 aa21.67■■□□□ 1.06
CTSA-210ENST00000606000 FBLN2P98095 1184 aa21.67■■□□□ 1.06
CTSA-210ENST00000606000 RIMBP3CA6NJZ7 1639 aa21.66■■□□□ 1.06
CTSA-210ENST00000606000 RIMBP3BA6NNM3 1639 aa21.66■■□□□ 1.06
CTSA-210ENST00000606000 RIMBP3Q9UFD9 1639 aa21.66■■□□□ 1.06
CTSA-210ENST00000606000 MAGI1Q96QZ7 1491 aaPredicted RBP21.64■■□□□ 1.06
CTSA-210ENST00000606000 TRIM41Q8WV44 630 aa21.64■■□□□ 1.05
CTSA-210ENST00000606000 ARHGEF11O15085 1522 aa21.6■■□□□ 1.05
CTSA-210ENST00000606000 SYNJ2O15056 1496 aa21.58■■□□□ 1.05
CTSA-210ENST00000606000 CHIC1Q5VXU3 224 aa21.57■■□□□ 1.04
CTSA-210ENST00000606000 CLASP1Q7Z460 1538 aa21.55■■□□□ 1.04
CTSA-210ENST00000606000 CHMP7Q8WUX9 453 aaPredicted RBP21.54■■□□□ 1.04
CTSA-210ENST00000606000 ADAMTS12P58397 1594 aa21.53■■□□□ 1.04
CTSA-210ENST00000606000 ERICH3Q5RHP9 1530 aa21.45■■□□□ 1.02
CTSA-210ENST00000606000 GRIN2AQ12879 1464 aa21.44■■□□□ 1.02
CTSA-210ENST00000606000 ARAP1Q96P48 1450 aa21.42■■□□□ 1.02
CTSA-210ENST00000606000 CEP170Q5SW79 1584 aa21.4■■□□□ 1.02
CTSA-210ENST00000606000 FHAD1B1AJZ9 1412 aa21.39■■□□□ 1.02
CTSA-210ENST00000606000 CYB5RLQ6IPT4 315 aa21.34■■□□□ 1.01
CTSA-210ENST00000606000 NUP160Q12769 1436 aa21.34■■□□□ 1.01
CTSA-210ENST00000606000 ERCC6L2Q5T890 1561 aa21.29■■□□□ 1
CTSA-210ENST00000606000 KIF27Q86VH2 1401 aa21.29■■□□□ 1
CTSA-210ENST00000606000 SHROOM2Q13796 1616 aa21.26■□□□□ 0.99
CTSA-210ENST00000606000 CUL7Q14999 1698 aa21.24■□□□□ 0.99
CTSA-210ENST00000606000 RUSC2Q8N2Y8 1516 aa21.24■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms