RNA–Protein interactions for RNA: ENST00000515311.5

LSM6-207, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 4

Gene LSM6, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-207ENST00000515311 NISCHQ9Y2I1 1504 aa49.78■■■■■ 5.56
LSM6-207ENST00000515311 CCDC180Q9P1Z9 1646 aa44.03■■■■■ 4.64
LSM6-207ENST00000515311 ABCC9O60706 1549 aa42.24■■■■■ 4.35
LSM6-207ENST00000515311 ZCCHC6Q5VYS8 1495 aaKnown RBP41.64■■■■■ 4.26
LSM6-207ENST00000515311 DCAF1Q9Y4B6 1507 aa41.28■■■■■ 4.2
LSM6-207ENST00000515311 MYO15BQ96JP2 1530 aa41.2■■■■■ 4.19
LSM6-207ENST00000515311 NACADO15069 1562 aa41.18■■■■■ 4.18
LSM6-207ENST00000515311 DCAF8L2P0C7V8 631 aa41.13■■■■■ 4.17
LSM6-207ENST00000515311 RB1CC1Q8TDY2 1594 aa41.04■■■■■ 4.16
LSM6-207ENST00000515311 UNC13AQ9UPW8 1703 aa40.16■■■■■ 4.02
LSM6-207ENST00000515311 SCRIBQ14160 1630 aa40.13■■■■■ 4.02
LSM6-207ENST00000515311 BICRAQ9NZM4 1560 aa39.76■■■■□ 3.96
LSM6-207ENST00000515311 SHROOM4Q9ULL8 1493 aa39.62■■■■□ 3.93
LSM6-207ENST00000515311 PABPN1Q86U42 306 aaKnown RBP eCLIP39.53■■■■□ 3.92
LSM6-207ENST00000515311 EIF4G1Q04637 1599 aaKnown RBP38.65■■■■□ 3.78
LSM6-207ENST00000515311 CECR2Q9BXF3 1484 aa38.64■■■■□ 3.78
LSM6-207ENST00000515311 BAZ1AQ9NRL2 1556 aaPredicted RBP38.56■■■■□ 3.76
LSM6-207ENST00000515311 SMARCA4P51532 1647 aa38.5■■■■□ 3.75
LSM6-207ENST00000515311 MROH2BQ7Z745 1585 aa38.36■■■■□ 3.73
LSM6-207ENST00000515311 CC2D2AQ9P2K1 1620 aa38.3■■■■□ 3.72
LSM6-207ENST00000515311 RSF1Q96T23 1441 aaPredicted RBP38.17■■■■□ 3.7
LSM6-207ENST00000515311 PEG3Q9GZU2 1588 aa38.15■■■■□ 3.7
LSM6-207ENST00000515311 SMARCA2P51531 1590 aa38.1■■■■□ 3.69
LSM6-207ENST00000515311 ATAD2BQ9ULI0 1458 aa38.07■■■■□ 3.68
LSM6-207ENST00000515311 DNAJC5BQ9UF47 199 aa38.05■■■■□ 3.68
LSM6-207ENST00000515311 WIZO95785 1651 aa38■■■■□ 3.67
LSM6-207ENST00000515311 NCAPD3P42695 1498 aa37.96■■■■□ 3.67
LSM6-207ENST00000515311 HMGXB3Q12766 1538 aa37.87■■■■□ 3.65
LSM6-207ENST00000515311 BAZ1BQ9UIG0 1483 aaKnown RBP37.8■■■■□ 3.64
LSM6-207ENST00000515311 TOP2AP11388 1531 aaKnown RBP37.66■■■■□ 3.62
LSM6-207ENST00000515311 SUPT5HO00267 1087 aaKnown RBP37.64■■■■□ 3.62
LSM6-207ENST00000515311 CCDC88BA6NC98 1476 aa37.17■■■■□ 3.54
LSM6-207ENST00000515311 LAMC3Q9Y6N6 1575 aa36.87■■■■□ 3.49
LSM6-207ENST00000515311 CADPSQ9ULU8 1353 aa36.85■■■■□ 3.49
LSM6-207ENST00000515311 CFTRP13569 1480 aa36.82■■■■□ 3.48
LSM6-207ENST00000515311 NESP48681 1621 aa36.77■■■■□ 3.48
LSM6-207ENST00000515311 PRDM2Q13029 1718 aa36.71■■■■□ 3.47
LSM6-207ENST00000515311 PDS5BQ9NTI5 1447 aa36.55■■■■□ 3.44
LSM6-207ENST00000515311 FANCD2Q9BXW9 1451 aa36.44■■■■□ 3.42
LSM6-207ENST00000515311 KIF21AQ7Z4S6 1674 aa36.44■■■■□ 3.42
LSM6-207ENST00000515311 ERCC6Q03468 1493 aa36.37■■■■□ 3.41
LSM6-207ENST00000515311 CEP164Q9UPV0 1460 aa36.35■■■■□ 3.41
LSM6-207ENST00000515311 MRC2Q9UBG0 1479 aa36.15■■■■□ 3.38
LSM6-207ENST00000515311 THOC2Q8NI27 1593 aaKnown RBP36.14■■■■□ 3.38
LSM6-207ENST00000515311 URB2Q14146 1524 aaKnown RBP36.04■■■■□ 3.36
LSM6-207ENST00000515311 ABCC8Q09428 1581 aa36.03■■■■□ 3.36
LSM6-207ENST00000515311 WDR62O43379 1518 aa36.03■■■■□ 3.36
LSM6-207ENST00000515311 DNMBPQ6XZF7 1577 aa36.01■■■■□ 3.35
LSM6-207ENST00000515311 WRNQ14191 1432 aaPredicted RBP eCLIP35.97■■■■□ 3.35
LSM6-207ENST00000515311 CUX1P39880 1505 aa35.96■■■■□ 3.35
LSM6-207ENST00000515311 TOPBP1Q92547 1522 aa35.95■■■■□ 3.35
LSM6-207ENST00000515311 BIVM-ERCC5R4GMW8 1640 aa35.89■■■■□ 3.34
LSM6-207ENST00000515311 TOP2BQ02880 1626 aa35.87■■■■□ 3.33
LSM6-207ENST00000515311 SYNJ1O43426 1573 aa35.87■■■■□ 3.33
LSM6-207ENST00000515311 CUX2O14529 1486 aa35.77■■■■□ 3.32
LSM6-207ENST00000515311 FGD5Q6ZNL6 1462 aa35.71■■■■□ 3.31
LSM6-207ENST00000515311 POLA1P09884 1462 aaPredicted RBP35.69■■■■□ 3.3
LSM6-207ENST00000515311 CHIC1Q5VXU3 224 aa35.59■■■■□ 3.29
LSM6-207ENST00000515311 TRIM41Q8WV44 630 aa35.56■■■■□ 3.28
LSM6-207ENST00000515311 IFT140Q96RY7 1462 aa35.55■■■■□ 3.28
LSM6-207ENST00000515311 TARBP1Q13395 1621 aaKnown RBP35.54■■■■□ 3.28
LSM6-207ENST00000515311 SOGA1O94964 1423 aa35.53■■■■□ 3.28
LSM6-207ENST00000515311 RAD54L2Q9Y4B4 1467 aa35.48■■■■□ 3.27
LSM6-207ENST00000515311 WDR97A6NE52 1622 aa35.46■■■■□ 3.27
LSM6-207ENST00000515311 ABCA10Q8WWZ4 1543 aa35.42■■■■□ 3.26
LSM6-207ENST00000515311 ZNF608Q9ULD9 1512 aaPredicted RBP35.29■■■■□ 3.24
LSM6-207ENST00000515311 EIF4G3O43432 1585 aaKnown RBP35.25■■■■□ 3.23
LSM6-207ENST00000515311 ABCA5Q8WWZ7 1642 aa35.25■■■■□ 3.23
LSM6-207ENST00000515311 TDRD9Q8NDG6 1382 aaKnown RBP35.21■■■■□ 3.23
LSM6-207ENST00000515311 KIF27Q86VH2 1401 aa35.17■■■■□ 3.22
LSM6-207ENST00000515311 AQRO60306 1485 aaKnown RBP eCLIP35.16■■■■□ 3.22
LSM6-207ENST00000515311 GAPVD1Q14C86 1478 aa35.16■■■■□ 3.22
LSM6-207ENST00000515311 PBRM1Q86U86 1689 aa35.11■■■■□ 3.21
LSM6-207ENST00000515311 GRIN2BQ13224 1484 aa35.06■■■■□ 3.2
LSM6-207ENST00000515311 ERICH3Q5RHP9 1530 aa35.03■■■■□ 3.2
LSM6-207ENST00000515311 RUSC2Q8N2Y8 1516 aa35.02■■■■□ 3.2
LSM6-207ENST00000515311 EEA1Q15075 1411 aa35.01■■■■□ 3.2
LSM6-207ENST00000515311 MAGI1Q96QZ7 1491 aaPredicted RBP34.92■■■■□ 3.18
LSM6-207ENST00000515311 IGF1RP08069 1367 aa34.91■■■■□ 3.18
LSM6-207ENST00000515311 SNAPC4Q5SXM2 1469 aa34.9■■■■□ 3.18
LSM6-207ENST00000515311 CUL7Q14999 1698 aa34.89■■■■□ 3.18
LSM6-207ENST00000515311 ADAMTS12P58397 1594 aa34.85■■■■□ 3.17
LSM6-207ENST00000515311 FHAD1B1AJZ9 1412 aa34.78■■■■□ 3.16
LSM6-207ENST00000515311 CSRNP3Q8WYN3 585 aa34.77■■■■□ 3.16
LSM6-207ENST00000515311 SYNJ2O15056 1496 aa34.76■■■■□ 3.15
LSM6-207ENST00000515311 FAM9AQ8IZU1 332 aaPredicted RBP34.74■■■■□ 3.15
LSM6-207ENST00000515311 CARMIL1Q5VZK9 1371 aa34.72■■■■□ 3.15
LSM6-207ENST00000515311 PRXQ9BXM0 1461 aa34.7■■■■□ 3.15
LSM6-207ENST00000515311 CHD1O14646 1710 aa34.68■■■■□ 3.14
LSM6-207ENST00000515311 RAPGEF2Q9Y4G8 1499 aa34.63■■■■□ 3.13
LSM6-207ENST00000515311 KIF21BO75037 1637 aa34.63■■■■□ 3.13
LSM6-207ENST00000515311 GRIN2AQ12879 1464 aa34.62■■■■□ 3.13
LSM6-207ENST00000515311 CHMP7Q8WUX9 453 aaPredicted RBP34.6■■■■□ 3.13
LSM6-207ENST00000515311 AEBP2Q6ZN18 517 aaPredicted RBP34.56■■■■□ 3.12
LSM6-207ENST00000515311 FBLN2P98095 1184 aa34.54■■■■□ 3.12
LSM6-207ENST00000515311 NUP160Q12769 1436 aa34.44■■■■□ 3.1
LSM6-207ENST00000515311 GOLGA3Q08378 1498 aa34.43■■■■□ 3.1
LSM6-207ENST00000515311 CEP170Q5SW79 1584 aa34.42■■■■□ 3.1
LSM6-207ENST00000515311 OSCARQ8IYS5 282 aa34.34■■■■□ 3.09
LSM6-207ENST00000515311 CTTNBP2Q8WZ74 1663 aa34.34■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms