RNA–Protein interactions for RNA: ENST00000266546.10

CLSTN3-201, Transcript of calsyntenin 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,185 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-201ENST00000266546 NISCHQ9Y2I1 1504 aa23.29■■□□□ 1.32
CLSTN3-201ENST00000266546 DCAF8L2P0C7V8 631 aa20.24■□□□□ 0.83
CLSTN3-201ENST00000266546 CCDC180Q9P1Z9 1646 aa20.07■□□□□ 0.8
CLSTN3-201ENST00000266546 SHROOM4Q9ULL8 1493 aa19.62■□□□□ 0.73
CLSTN3-201ENST00000266546 ZCCHC6Q5VYS8 1495 aaKnown RBP19.5■□□□□ 0.71
CLSTN3-201ENST00000266546 SUPT5HO00267 1087 aaKnown RBP19.33■□□□□ 0.68
CLSTN3-201ENST00000266546 ABCC9O60706 1549 aa19.28■□□□□ 0.68
CLSTN3-201ENST00000266546 DCAF1Q9Y4B6 1507 aa19.16■□□□□ 0.66
CLSTN3-201ENST00000266546 NACADO15069 1562 aa18.92■□□□□ 0.62
CLSTN3-201ENST00000266546 MYO15BQ96JP2 1530 aa18.88■□□□□ 0.61
CLSTN3-201ENST00000266546 RB1CC1Q8TDY2 1594 aa18.81■□□□□ 0.6
CLSTN3-201ENST00000266546 SCRIBQ14160 1630 aa18.7■□□□□ 0.58
CLSTN3-201ENST00000266546 PCGF6Q9BYE7 350 aa18.45■□□□□ 0.54
CLSTN3-201ENST00000266546 PABPN1Q86U42 306 aaKnown RBP eCLIP18.39■□□□□ 0.537e-7■■■■□ 25.6
CLSTN3-201ENST00000266546 EHMT2Q96KQ7 1210 aa18.2■□□□□ 0.5
CLSTN3-201ENST00000266546 RSF1Q96T23 1441 aaPredicted RBP18.18■□□□□ 0.5
CLSTN3-201ENST00000266546 HRCP23327 699 aa18.18■□□□□ 0.5
CLSTN3-201ENST00000266546 TRIM41Q8WV44 630 aa18.14■□□□□ 0.49
CLSTN3-201ENST00000266546 CHIC1Q5VXU3 224 aa18.13■□□□□ 0.49
CLSTN3-201ENST00000266546 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
CLSTN3-201ENST00000266546 PELP1Q8IZL8 1130 aaKnown RBP18.1■□□□□ 0.49
CLSTN3-201ENST00000266546 FAM9AQ8IZU1 332 aaPredicted RBP18.05■□□□□ 0.48
CLSTN3-201ENST00000266546 CECR2Q9BXF3 1484 aa18.02■□□□□ 0.48
CLSTN3-201ENST00000266546 ZEB1P37275 1124 aaPredicted RBP17.94■□□□□ 0.46
CLSTN3-201ENST00000266546 MROH2BQ7Z745 1585 aa17.92■□□□□ 0.46
CLSTN3-201ENST00000266546 SMARCA4P51532 1647 aa17.79■□□□□ 0.44
CLSTN3-201ENST00000266546 PPARGC1BQ86YN6 1023 aaKnown RBP17.79■□□□□ 0.44
CLSTN3-201ENST00000266546 BAZ1BQ9UIG0 1483 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-201ENST00000266546 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
CLSTN3-201ENST00000266546 TRIM26Q12899 539 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-201ENST00000266546 CENPBP07199 599 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-201ENST00000266546 WIZO95785 1651 aa17.71■□□□□ 0.43
CLSTN3-201ENST00000266546 TOP2AP11388 1531 aaKnown RBP17.71■□□□□ 0.43
CLSTN3-201ENST00000266546 BICRAQ9NZM4 1560 aa17.68■□□□□ 0.42
CLSTN3-201ENST00000266546 LOC105371045A0A1W2PR82 267 aa17.68■□□□□ 0.42
CLSTN3-201ENST00000266546 UNC13AQ9UPW8 1703 aa17.66■□□□□ 0.42
CLSTN3-201ENST00000266546 MYT1Q01538 1121 aa17.61■□□□□ 0.41
CLSTN3-201ENST00000266546 ATAD2BQ9ULI0 1458 aa17.6■□□□□ 0.41
CLSTN3-201ENST00000266546 CCER1Q8TC90 406 aaPredicted RBP17.58■□□□□ 0.41
CLSTN3-201ENST00000266546 CCDC88BA6NC98 1476 aa17.56■□□□□ 0.4
CLSTN3-201ENST00000266546 TTBK1Q5TCY1 1321 aaPredicted RBP17.54■□□□□ 0.4
CLSTN3-201ENST00000266546 UBTFP17480 764 aaKnown RBP17.5■□□□□ 0.39
CLSTN3-201ENST00000266546 EIF4G1Q04637 1599 aaKnown RBP17.46■□□□□ 0.39
CLSTN3-201ENST00000266546 NCAPD3P42695 1498 aa17.44■□□□□ 0.38
CLSTN3-201ENST00000266546 APLP2Q06481 763 aa17.41■□□□□ 0.38
CLSTN3-201ENST00000266546 PEG3Q9GZU2 1588 aa17.39■□□□□ 0.37
CLSTN3-201ENST00000266546 WRNQ14191 1432 aaPredicted RBP eCLIP17.39■□□□□ 0.37
CLSTN3-201ENST00000266546 RANGAP1P46060 587 aaPredicted RBP17.38■□□□□ 0.37
CLSTN3-201ENST00000266546 EEA1Q15075 1411 aa17.37■□□□□ 0.37
CLSTN3-201ENST00000266546 CSRNP3Q8WYN3 585 aa17.36■□□□□ 0.37
CLSTN3-201ENST00000266546 HMGXB3Q12766 1538 aa17.34■□□□□ 0.37
CLSTN3-201ENST00000266546 YTHDC1Q96MU7 727 aaKnown RBP17.29■□□□□ 0.36
CLSTN3-201ENST00000266546 CADPSQ9ULU8 1353 aa17.21■□□□□ 0.35
CLSTN3-201ENST00000266546 ABCC8Q09428 1581 aa17.17■□□□□ 0.34
CLSTN3-201ENST00000266546 CC2D2AQ9P2K1 1620 aa17.15■□□□□ 0.34
CLSTN3-201ENST00000266546 DIEXFQ68CQ4 756 aaKnown RBP17.09■□□□□ 0.33
CLSTN3-201ENST00000266546 KIF27Q86VH2 1401 aa17.08■□□□□ 0.33
CLSTN3-201ENST00000266546 PDS5BQ9NTI5 1447 aa17.08■□□□□ 0.33
CLSTN3-201ENST00000266546 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.08■□□□□ 0.32
CLSTN3-201ENST00000266546 CFTRP13569 1480 aa17.07■□□□□ 0.32
CLSTN3-201ENST00000266546 GOLGA3Q08378 1498 aa17.07■□□□□ 0.32
CLSTN3-201ENST00000266546 CEP164Q9UPV0 1460 aa17.05■□□□□ 0.32
CLSTN3-201ENST00000266546 GTF3C3Q9Y5Q9 886 aa17.03■□□□□ 0.32
CLSTN3-201ENST00000266546 ATP1B4Q9UN42 357 aaPredicted RBP17.02■□□□□ 0.32
CLSTN3-201ENST00000266546 SOGA1O94964 1423 aa17.01■□□□□ 0.31
CLSTN3-201ENST00000266546 TNIKQ9UKE5 1360 aa17■□□□□ 0.31
CLSTN3-201ENST00000266546 ACIN1Q9UKV3 1341 aaKnown RBP16.96■□□□□ 0.31
CLSTN3-201ENST00000266546 FANCD2Q9BXW9 1451 aa16.96■□□□□ 0.31
CLSTN3-201ENST00000266546 CUX2O14529 1486 aa16.89■□□□□ 0.3
CLSTN3-201ENST00000266546 SCAF1Q9H7N4 1312 aaKnown RBP16.89■□□□□ 0.29
CLSTN3-201ENST00000266546 ERICH6Q7L0X2 663 aa16.89■□□□□ 0.29
CLSTN3-201ENST00000266546 CEP162Q5TB80 1403 aa16.88■□□□□ 0.29
CLSTN3-201ENST00000266546 CLIP1P30622 1438 aa16.86■□□□□ 0.29
CLSTN3-201ENST00000266546 TOP2BQ02880 1626 aa16.86■□□□□ 0.29
CLSTN3-201ENST00000266546 ERCC6Q03468 1493 aa16.85■□□□□ 0.29
CLSTN3-201ENST00000266546 SYNJ1O43426 1573 aa16.85■□□□□ 0.29
CLSTN3-201ENST00000266546 NEFLP07196 543 aa16.84■□□□□ 0.29
CLSTN3-201ENST00000266546 LAMC3Q9Y6N6 1575 aa16.82■□□□□ 0.28
CLSTN3-201ENST00000266546 HNRNPUL2Q1KMD3 747 aaKnown RBP16.81■□□□□ 0.28
CLSTN3-201ENST00000266546 CARMIL1Q5VZK9 1371 aa16.8■□□□□ 0.28
CLSTN3-201ENST00000266546 FGD5Q6ZNL6 1462 aa16.76■□□□□ 0.27
CLSTN3-201ENST00000266546 RUSC2Q8N2Y8 1516 aa16.76■□□□□ 0.27
CLSTN3-201ENST00000266546 CUX1P39880 1505 aa16.75■□□□□ 0.27
CLSTN3-201ENST00000266546 NEUROD1Q13562 356 aa16.73■□□□□ 0.27
CLSTN3-201ENST00000266546 NESP48681 1621 aa16.72■□□□□ 0.27
CLSTN3-201ENST00000266546 BIVM-ERCC5R4GMW8 1640 aa16.7■□□□□ 0.26
CLSTN3-201ENST00000266546 ITGAEP38570 1179 aa16.7■□□□□ 0.26
CLSTN3-201ENST00000266546 DNMBPQ6XZF7 1577 aa16.7■□□□□ 0.26
CLSTN3-201ENST00000266546 ZNF316A6NFI3 1004 aaPredicted RBP16.69■□□□□ 0.26
CLSTN3-201ENST00000266546 KIF21BO75037 1637 aa16.69■□□□□ 0.26
CLSTN3-201ENST00000266546 RAPGEF2Q9Y4G8 1499 aa16.69■□□□□ 0.26
CLSTN3-201ENST00000266546 TOPBP1Q92547 1522 aa16.67■□□□□ 0.26
CLSTN3-201ENST00000266546 FBLN2P98095 1184 aa16.67■□□□□ 0.26
CLSTN3-201ENST00000266546 ERICH3Q5RHP9 1530 aa16.64■□□□□ 0.25
CLSTN3-201ENST00000266546 IGF1RP08069 1367 aa16.63■□□□□ 0.25
CLSTN3-201ENST00000266546 MYT1LQ9UL68 1186 aa16.63■□□□□ 0.25
CLSTN3-201ENST00000266546 TDRD9Q8NDG6 1382 aaKnown RBP16.63■□□□□ 0.25
CLSTN3-201ENST00000266546 P3H3Q8IVL6 736 aa16.62■□□□□ 0.25
CLSTN3-201ENST00000266546 MRC2Q9UBG0 1479 aa16.61■□□□□ 0.25
CLSTN3-201ENST00000266546 CHMP7Q8WUX9 453 aaPredicted RBP16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms