RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 NISCHQ9Y2I1 1504 aa20.83■□□□□ 0.92
CLSTN3-207ENST00000537408 DCAF8L2P0C7V8 631 aa19.17■□□□□ 0.66
CLSTN3-207ENST00000537408 PELP1Q8IZL8 1130 aaKnown RBP18.87■□□□□ 0.61
CLSTN3-207ENST00000537408 ABCC9O60706 1549 aa18.5■□□□□ 0.55
CLSTN3-207ENST00000537408 MYT1Q01538 1121 aa18.47■□□□□ 0.55
CLSTN3-207ENST00000537408 HRCP23327 699 aa18.19■□□□□ 0.5
CLSTN3-207ENST00000537408 CCDC180Q9P1Z9 1646 aa18.12■□□□□ 0.49
CLSTN3-207ENST00000537408 PABPN1Q86U42 306 aaKnown RBP eCLIP17.63■□□□□ 0.417e-7■■■■□ 25.6
CLSTN3-207ENST00000537408 PPARGC1BQ86YN6 1023 aaKnown RBP17.58■□□□□ 0.41
CLSTN3-207ENST00000537408 RB1CC1Q8TDY2 1594 aa17.57■□□□□ 0.4
CLSTN3-207ENST00000537408 SHROOM4Q9ULL8 1493 aa17.54■□□□□ 0.4
CLSTN3-207ENST00000537408 PCGF6Q9BYE7 350 aa17.5■□□□□ 0.39
CLSTN3-207ENST00000537408 TTBK1Q5TCY1 1321 aaPredicted RBP17.49■□□□□ 0.39
CLSTN3-207ENST00000537408 SCAF1Q9H7N4 1312 aaKnown RBP17.43■□□□□ 0.38
CLSTN3-207ENST00000537408 NACADO15069 1562 aa17.43■□□□□ 0.38
CLSTN3-207ENST00000537408 SUPT5HO00267 1087 aaKnown RBP17.31■□□□□ 0.36
CLSTN3-207ENST00000537408 ZCCHC6Q5VYS8 1495 aaKnown RBP17.21■□□□□ 0.35
CLSTN3-207ENST00000537408 ZEB1P37275 1124 aaPredicted RBP17.16■□□□□ 0.34
CLSTN3-207ENST00000537408 SCRIBQ14160 1630 aa17.06■□□□□ 0.32
CLSTN3-207ENST00000537408 ACIN1Q9UKV3 1341 aaKnown RBP16.99■□□□□ 0.31
CLSTN3-207ENST00000537408 MYO15BQ96JP2 1530 aa16.99■□□□□ 0.31
CLSTN3-207ENST00000537408 DCAF1Q9Y4B6 1507 aa16.97■□□□□ 0.31
CLSTN3-207ENST00000537408 CENPBP07199 599 aaPredicted RBP16.96■□□□□ 0.3
CLSTN3-207ENST00000537408 TRIM26Q12899 539 aaPredicted RBP16.87■□□□□ 0.29
CLSTN3-207ENST00000537408 GTF3C3Q9Y5Q9 886 aa16.86■□□□□ 0.29
CLSTN3-207ENST00000537408 NEUROD1Q13562 356 aa16.77■□□□□ 0.28
CLSTN3-207ENST00000537408 BCL11AQ9H165 835 aa16.77■□□□□ 0.27
CLSTN3-207ENST00000537408 CHIC1Q5VXU3 224 aa16.68■□□□□ 0.26
CLSTN3-207ENST00000537408 ERICH6Q7L0X2 663 aa16.58■□□□□ 0.25
CLSTN3-207ENST00000537408 CECR2Q9BXF3 1484 aa16.57■□□□□ 0.24
CLSTN3-207ENST00000537408 PRKCSHP14314 528 aaPredicted RBP16.53■□□□□ 0.24
CLSTN3-207ENST00000537408 FAM9AQ8IZU1 332 aaPredicted RBP16.49■□□□□ 0.23
CLSTN3-207ENST00000537408 DNAJC5BQ9UF47 199 aa16.44■□□□□ 0.22
CLSTN3-207ENST00000537408 ANP32EQ9BTT0 268 aa16.43■□□□□ 0.22
CLSTN3-207ENST00000537408 ERCC6Q03468 1493 aa16.4■□□□□ 0.22
CLSTN3-207ENST00000537408 DIEXFQ68CQ4 756 aaKnown RBP16.39■□□□□ 0.21
CLSTN3-207ENST00000537408 BAZ1BQ9UIG0 1483 aaKnown RBP16.38■□□□□ 0.21
CLSTN3-207ENST00000537408 BAZ1AQ9NRL2 1556 aaPredicted RBP16.34■□□□□ 0.21
CLSTN3-207ENST00000537408 EIF4G1Q04637 1599 aaKnown RBP16.31■□□□□ 0.2
CLSTN3-207ENST00000537408 LOC105371045A0A1W2PR82 267 aa16.29■□□□□ 0.2
CLSTN3-207ENST00000537408 SMARCA2P51531 1590 aa16.29■□□□□ 0.2
CLSTN3-207ENST00000537408 EHMT2Q96KQ7 1210 aa16.28■□□□□ 0.2
CLSTN3-207ENST00000537408 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
CLSTN3-207ENST00000537408 CC2D2AQ9P2K1 1620 aa16.21■□□□□ 0.19
CLSTN3-207ENST00000537408 YTHDC1Q96MU7 727 aaKnown RBP16.19■□□□□ 0.18
CLSTN3-207ENST00000537408 CCER1Q8TC90 406 aaPredicted RBP16.15■□□□□ 0.18
CLSTN3-207ENST00000537408 CLSPNQ9HAW4 1339 aa16.15■□□□□ 0.18
CLSTN3-207ENST00000537408 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
CLSTN3-207ENST00000537408 ATAD2BQ9ULI0 1458 aa16.13■□□□□ 0.17
CLSTN3-207ENST00000537408 TRIM41Q8WV44 630 aa16.13■□□□□ 0.17
CLSTN3-207ENST00000537408 CSRNP3Q8WYN3 585 aa16.13■□□□□ 0.17
CLSTN3-207ENST00000537408 FBLN2P98095 1184 aa16.11■□□□□ 0.17
CLSTN3-207ENST00000537408 APLP2Q06481 763 aa16.08■□□□□ 0.16
CLSTN3-207ENST00000537408 NCAPD3P42695 1498 aa16.07■□□□□ 0.16
CLSTN3-207ENST00000537408 UNC13AQ9UPW8 1703 aa16.07■□□□□ 0.16
CLSTN3-207ENST00000537408 RSF1Q96T23 1441 aaPredicted RBP16.04■□□□□ 0.16
CLSTN3-207ENST00000537408 SMARCA4P51532 1647 aa16.02■□□□□ 0.15
CLSTN3-207ENST00000537408 MROH2BQ7Z745 1585 aa15.99■□□□□ 0.15
CLSTN3-207ENST00000537408 CADPSQ9ULU8 1353 aa15.96■□□□□ 0.15
CLSTN3-207ENST00000537408 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.96■□□□□ 0.15
CLSTN3-207ENST00000537408 ZNF316A6NFI3 1004 aaPredicted RBP15.94■□□□□ 0.14
CLSTN3-207ENST00000537408 TSHZ2Q9NRE2 1034 aa15.94■□□□□ 0.14
CLSTN3-207ENST00000537408 SUPT16HQ9Y5B9 1047 aaKnown RBP15.86■□□□□ 0.13
CLSTN3-207ENST00000537408 HMGXB3Q12766 1538 aa15.84■□□□□ 0.13
CLSTN3-207ENST00000537408 CHMP7Q8WUX9 453 aaPredicted RBP15.82■□□□□ 0.12
CLSTN3-207ENST00000537408 CEP164Q9UPV0 1460 aa15.81■□□□□ 0.12
CLSTN3-207ENST00000537408 MYT1LQ9UL68 1186 aa15.79■□□□□ 0.12
CLSTN3-207ENST00000537408 MIER1Q8N108 512 aa15.77■□□□□ 0.12
CLSTN3-207ENST00000537408 RANGAP1P46060 587 aaPredicted RBP15.75■□□□□ 0.11
CLSTN3-207ENST00000537408 TOP2AP11388 1531 aaKnown RBP15.75■□□□□ 0.11
CLSTN3-207ENST00000537408 WIZO95785 1651 aa15.72■□□□□ 0.11
CLSTN3-207ENST00000537408 UBTFP17480 764 aaKnown RBP15.72■□□□□ 0.11
CLSTN3-207ENST00000537408 FANCD2Q9BXW9 1451 aa15.72■□□□□ 0.11
CLSTN3-207ENST00000537408 NPM1P06748 294 aaKnown RBP eCLIP15.68■□□□□ 0.1
CLSTN3-207ENST00000537408 ATP1B4Q9UN42 357 aaPredicted RBP15.67■□□□□ 0.1
CLSTN3-207ENST00000537408 CCDC88BA6NC98 1476 aa15.66■□□□□ 0.1
CLSTN3-207ENST00000537408 NESP48681 1621 aa15.66■□□□□ 0.1
CLSTN3-207ENST00000537408 OSCARQ8IYS5 282 aa15.65■□□□□ 0.1
CLSTN3-207ENST00000537408 ABCC8Q09428 1581 aa15.65■□□□□ 0.1
CLSTN3-207ENST00000537408 HNRNPUL2Q1KMD3 747 aaKnown RBP15.63■□□□□ 0.09
CLSTN3-207ENST00000537408 LAMC3Q9Y6N6 1575 aa15.62■□□□□ 0.09
CLSTN3-207ENST00000537408 MRC2Q9UBG0 1479 aa15.61■□□□□ 0.09
CLSTN3-207ENST00000537408 ANO8Q9HCE9 1232 aaPredicted RBP15.56■□□□□ 0.08
CLSTN3-207ENST00000537408 RBM19Q9Y4C8 960 aaKnown RBP15.56■□□□□ 0.08
CLSTN3-207ENST00000537408 SOGA1O94964 1423 aa15.54■□□□□ 0.08
CLSTN3-207ENST00000537408 WRNQ14191 1432 aaPredicted RBP eCLIP15.53■□□□□ 0.08
CLSTN3-207ENST00000537408 ERICH6BQ5W0A0 696 aa15.53■□□□□ 0.08
CLSTN3-207ENST00000537408 NEFLP07196 543 aa15.52■□□□□ 0.08
CLSTN3-207ENST00000537408 CFTRP13569 1480 aa15.52■□□□□ 0.08
CLSTN3-207ENST00000537408 CUX2O14529 1486 aa15.52■□□□□ 0.08
CLSTN3-207ENST00000537408 PEG3Q9GZU2 1588 aa15.51■□□□□ 0.07
CLSTN3-207ENST00000537408 TRHP20396 242 aaPredicted RBP15.5■□□□□ 0.07
CLSTN3-207ENST00000537408 BCANQ96GW7 911 aa15.49■□□□□ 0.07
CLSTN3-207ENST00000537408 DEKP35659 375 aaKnown RBP15.48■□□□□ 0.07
CLSTN3-207ENST00000537408 TDRD9Q8NDG6 1382 aaKnown RBP15.47■□□□□ 0.07
CLSTN3-207ENST00000537408 UBE2Q2Q8WVN8 375 aa15.46■□□□□ 0.07
CLSTN3-207ENST00000537408 FKBP8Q14318 412 aa15.4■□□□□ 0.06
CLSTN3-207ENST00000537408 KIF27Q86VH2 1401 aa15.39■□□□□ 0.05
CLSTN3-207ENST00000537408 IFT140Q96RY7 1462 aa15.39■□□□□ 0.05
CLSTN3-207ENST00000537408 FANCIQ9NVI1 1328 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms