Protein–RNA interactions for Protein: P43243

MATR3, Matrin-3, humanhuman

Known RBP eCLIP

Length 847 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MATR3P43243 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.779e-7■■■■□ 23.8
MATR3P43243 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC20.58■□□□□ 0.891e-7■■■■□ 23.8
MATR3P43243 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.05■□□□□ 0.81e-7■■■■□ 23.8
MATR3P43243 LCORL-205ENST00000510451 1013 ntTSL 215.16■□□□□ 0.021e-7■■■■□ 23.8
MATR3P43243 LCORL-207ENST00000635767 10430 ntTSL 5 BASIC12.22□□□□□ -0.451e-7■■■■□ 23.8
MATR3P43243 LCORL-208ENST00000637787 9431 ntTSL 54.76□□□□□ -1.651e-7■■■■□ 23.8
MATR3P43243 LCORL-204ENST00000510121 486 ntTSL 32.72□□□□□ -1.971e-7■■■■□ 23.8
MATR3P43243 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.59□□□□□ -1.991e-7■■■■□ 23.8
MATR3P43243 KMT2A-210ENST00000532204 499 ntTSL 221.52■■□□□ 1.046e-11■■■■□ 23.8
MATR3P43243 KMT2A-208ENST00000529852 3323 ntTSL 214.02□□□□□ -0.166e-11■■■■□ 23.8
MATR3P43243 PHF20-207ENST00000461122 919 ntTSL 319.66■□□□□ 0.746e-7■■■■□ 23.8
MATR3P43243 PHF20-203ENST00000374012 5922 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.026e-7■■■■□ 23.8
MATR3P43243 PHF20-206ENST00000452270 832 ntTSL 514.32□□□□□ -0.126e-7■■■■□ 23.8
MATR3P43243 PHF20-211ENST00000481202 1635 ntTSL 1 (best)13.99□□□□□ -0.176e-7■■■■□ 23.8
MATR3P43243 PHF20-201ENST00000339089 1997 ntTSL 213.91□□□□□ -0.186e-7■■■■□ 23.8
MATR3P43243 PHF20-208ENST00000461405 550 ntTSL 213.22□□□□□ -0.296e-7■■■■□ 23.8
MATR3P43243 PHF20-202ENST00000374000 1814 ntTSL 1 (best)12.35□□□□□ -0.436e-7■■■■□ 23.8
MATR3P43243 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.68■■□□□ 1.549e-7■■■■□ 23.8
MATR3P43243 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.7■■□□□ 1.069e-7■■■■□ 23.8
MATR3P43243 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.589e-7■■■■□ 23.8
MATR3P43243 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.94■□□□□ 0.34e-6■■■■□ 23.8
MATR3P43243 EXOC6B-201ENST00000272427 5918 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.164e-6■■■■□ 23.8
MATR3P43243 CUX1-210ENST00000497815 947 ntTSL 213.06□□□□□ -0.326e-7■■■■□ 23.8
MATR3P43243 CUX1-216ENST00000558469 588 ntTSL 410.53□□□□□ -0.726e-7■■■■□ 23.8
MATR3P43243 CUX1-220ENST00000607092 559 ntTSL 36.84□□□□□ -1.316e-7■■■■□ 23.8
MATR3P43243 DPY19L1P1-201ENST00000417811 2594 ntBASIC7.08□□□□□ -1.288e-7■■■■□ 23.8
MATR3P43243 PTK2-248ENST00000523675 650 ntTSL 39.16□□□□□ -0.945e-7■■■■□ 23.7
MATR3P43243 AC116049.2-201ENST00000508572 754 ntTSL 4 BASIC8.19□□□□□ -1.12e-6■■■■□ 23.7
MATR3P43243 RAPGEF5-204ENST00000420196 660 ntTSL 512.83□□□□□ -0.369e-7■■■■□ 23.7
MATR3P43243 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.484e-7■■■■□ 23.7
MATR3P43243 GALNT2-203ENST00000488903 593 ntTSL 228.15■■■□□ 2.16e-7■■■■□ 23.7
MATR3P43243 SHC1-201ENST00000366442 780 ntTSL 325.79■■□□□ 1.726e-7■■■■□ 23.7
MATR3P43243 SHC1-206ENST00000412170 692 ntTSL 525.79■■□□□ 1.726e-7■■■■□ 23.7
MATR3P43243 AMDHD2-212ENST00000566706 940 ntTSL 524.69■■□□□ 1.548e-8■■■■□ 23.7
MATR3P43243 TAB3-201ENST00000288422 805 ntTSL 524.42■■□□□ 1.56e-7■■■■□ 23.7
MATR3P43243 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC23■■□□□ 1.276e-7■■■■□ 23.7
MATR3P43243 ZNF140-203ENST00000356456 726 ntTSL 322.95■■□□□ 1.263e-8■■■■□ 23.7
MATR3P43243 AMDHD2-211ENST00000565963 844 ntTSL 522.9■■□□□ 1.268e-8■■■■□ 23.7
MATR3P43243 AMDHD2-214ENST00000567475 714 ntTSL 222.34■■□□□ 1.178e-8■■■■□ 23.7
MATR3P43243 AMDHD2-209ENST00000563633 1117 ntTSL 522.14■■□□□ 1.138e-8■■■■□ 23.7
MATR3P43243 AMDHD2-217ENST00000569879 924 ntTSL 321.31■■□□□ 18e-8■■■■□ 23.7
MATR3P43243 AMDHD2-208ENST00000563556 490 ntTSL 421.31■■□□□ 18e-8■■■■□ 23.7
MATR3P43243 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC21.19■□□□□ 0.986e-7■■■■□ 23.7
MATR3P43243 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.986e-7■■■■□ 23.7
MATR3P43243 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.978e-8■■■■□ 23.7
MATR3P43243 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.976e-7■■■■□ 23.7
MATR3P43243 ZNF140-205ENST00000412146 553 ntTSL 320.66■□□□□ 0.93e-8■■■■□ 23.7
MATR3P43243 RALA-205ENST00000468201 705 ntTSL 420.63■□□□□ 0.896e-7■■■■□ 23.7
MATR3P43243 RBM14-RBM4-202ENST00000421355 2034 ntTSL 220.6■□□□□ 0.896e-7■■■■□ 23.7
MATR3P43243 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.796e-7■■■■□ 23.7
MATR3P43243 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.97■□□□□ 0.798e-8■■■■□ 23.7
MATR3P43243 AMDHD2-215ENST00000568263 1482 ntTSL 219.79■□□□□ 0.768e-8■■■■□ 23.7
MATR3P43243 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.49■□□□□ 0.716e-7■■■■□ 23.7
MATR3P43243 RALA-203ENST00000436179 882 ntTSL 219.46■□□□□ 0.716e-7■■■■□ 23.7
MATR3P43243 AMDHD2-216ENST00000569219 735 ntTSL 219.3■□□□□ 0.688e-8■■■■□ 23.7
MATR3P43243 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC19.16■□□□□ 0.663e-8■■■■□ 23.7
MATR3P43243 WDR27-206ENST00000474018 951 ntTSL 219.15■□□□□ 0.666e-7■■■■□ 23.7
MATR3P43243 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.78■□□□□ 0.66e-7■■■■□ 23.7
MATR3P43243 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.74■□□□□ 0.596e-7■■■■□ 23.7
MATR3P43243 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC18.69■□□□□ 0.583e-8■■■■□ 23.7
MATR3P43243 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.576e-7■■■■□ 23.7
MATR3P43243 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.42■□□□□ 0.546e-7■■■■□ 23.7
MATR3P43243 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.08■□□□□ 0.496e-7■■■■□ 23.7
MATR3P43243 SKP2-205ENST00000509692 1646 ntTSL 217.9■□□□□ 0.466e-7■■■■□ 23.7
MATR3P43243 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.396e-7■■■■□ 23.7
MATR3P43243 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.316e-7■■■■□ 23.7
MATR3P43243 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.316e-7■■■■□ 23.7
MATR3P43243 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.92■□□□□ 0.36e-7■■■■□ 23.7
MATR3P43243 WDR27-201ENST00000423258 2465 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.26e-7■■■■□ 23.7
MATR3P43243 CD99L2-208ENST00000613030 3742 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.116e-7■■■■□ 23.7
MATR3P43243 AMDHD2-202ENST00000302956 3273 ntTSL 1 (best) BASIC15.27■□□□□ 0.038e-8■■■■□ 23.7
MATR3P43243 CD99L2-205ENST00000437787 3493 ntTSL 2 BASIC15.23■□□□□ 0.036e-7■■■■□ 23.7
MATR3P43243 GALNT2-205ENST00000494106 692 ntTSL 514.97□□□□□ -0.016e-7■■■■□ 23.7
MATR3P43243 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC14.69□□□□□ -0.066e-7■■■■□ 23.7
MATR3P43243 ZNF140-202ENST00000355557 3550 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.093e-8■■■■□ 23.7
MATR3P43243 SKP2-209ENST00000620197 3255 ntTSL 2 BASIC14.38□□□□□ -0.116e-7■■■■□ 23.7
MATR3P43243 WDR27-203ENST00000448612 3178 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.136e-7■■■■□ 23.7
MATR3P43243 ARID1B-201ENST00000319584 2199 ntTSL 214.06□□□□□ -0.166e-7■■■■□ 23.7
MATR3P43243 RALA-201ENST00000005257 2880 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.176e-7■■■■□ 23.7
MATR3P43243 CD99L2-203ENST00000370377 3604 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.246e-7■■■■□ 23.7
MATR3P43243 RBM14-RBM4-204ENST00000511114 523 ntTSL 413.42□□□□□ -0.266e-7■■■■□ 23.7
MATR3P43243 CEP85-202ENST00000451429 4061 ntTSL 2 BASIC13.34□□□□□ -0.276e-7■■■■□ 23.7
MATR3P43243 CDYL-202ENST00000343762 3241 ntTSL 1 (best) BASIC13.24□□□□□ -0.296e-7■■■■□ 23.7
MATR3P43243 SKP2-202ENST00000274255 3759 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.36e-7■■■■□ 23.7
MATR3P43243 ZNF140-201ENST00000319849 596 ntTSL 5 BASIC13.04□□□□□ -0.323e-8■■■■□ 23.7
MATR3P43243 CD99L2-201ENST00000346693 4935 ntTSL 1 (best)12.81□□□□□ -0.366e-7■■■■□ 23.7
MATR3P43243 ARID1B-209ENST00000494260 696 ntTSL 312.49□□□□□ -0.416e-7■■■■□ 23.7
MATR3P43243 ARID1B-225ENST00000637532 445 ntTSL 512.44□□□□□ -0.426e-7■■■■□ 23.7
MATR3P43243 ATP9B-201ENST00000307671 3533 ntAPPRIS P1 TSL 1 (best) BASIC12.33□□□□□ -0.436e-7■■■■□ 23.7
MATR3P43243 ATP9B-203ENST00000458297 1507 ntTSL 1 (best) BASIC12.25□□□□□ -0.456e-7■■■■□ 23.7
MATR3P43243 NSL1-202ENST00000366977 2317 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.456e-7■■■■□ 23.7
MATR3P43243 NSL1-206ENST00000626725 790 ntTSL 2 BASIC12.08□□□□□ -0.486e-7■■■■□ 23.7
MATR3P43243 CEP85-205ENST00000469609 2384 ntTSL 1 (best)11.98□□□□□ -0.496e-7■■■■□ 23.7
MATR3P43243 ATP9B-204ENST00000490210 7353 ntTSL 1 (best)11.86□□□□□ -0.516e-7■■■■□ 23.7
MATR3P43243 WDR27-212ENST00000546953 3175 ntTSL 211.86□□□□□ -0.516e-7■■■■□ 23.7
MATR3P43243 CD99L2-207ENST00000491877 437 ntTSL 511.58□□□□□ -0.566e-7■■■■□ 23.7
MATR3P43243 FBXL20-201ENST00000264658 10388 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.66e-7■■■■□ 23.7
MATR3P43243 ZNF140-206ENST00000429434 1945 ntTSL 210.85□□□□□ -0.673e-8■■■■□ 23.7
MATR3P43243 CEP85-203ENST00000453146 2821 ntTSL 1 (best)10.72□□□□□ -0.696e-7■■■■□ 23.7
MATR3P43243 ARID1B-205ENST00000414678 6528 ntAPPRIS ALT2 TSL 510.53□□□□□ -0.726e-7■■■■□ 23.7
Retrieved 100 of 16,209 protein–RNA pairs in 192.2 ms