RNA–Protein interactions for RNA: ENST00000509692.5

SKP2-205, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 2

Gene SKP2, Length 1,646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-205ENST00000509692 NISCHQ9Y2I1 1504 aa39.66■■■■□ 3.94
SKP2-205ENST00000509692 CCDC180Q9P1Z9 1646 aa35.28■■■■□ 3.24
SKP2-205ENST00000509692 ABCC9O60706 1549 aa34.69■■■■□ 3.14
SKP2-205ENST00000509692 RB1CC1Q8TDY2 1594 aa33.26■■■□□ 2.92
SKP2-205ENST00000509692 DCAF8L2P0C7V8 631 aa33.21■■■□□ 2.91
SKP2-205ENST00000509692 NACADO15069 1562 aa33.2■■■□□ 2.91
SKP2-205ENST00000509692 ZCCHC6Q5VYS8 1495 aaKnown RBP33.01■■■□□ 2.87
SKP2-205ENST00000509692 MYO15BQ96JP2 1530 aa32.95■■■□□ 2.87
SKP2-205ENST00000509692 DCAF1Q9Y4B6 1507 aa32.77■■■□□ 2.84
SKP2-205ENST00000509692 UNC13AQ9UPW8 1703 aa32.59■■■□□ 2.81
SKP2-205ENST00000509692 PABPN1Q86U42 306 aaKnown RBP eCLIP32.42■■■□□ 2.78
SKP2-205ENST00000509692 BICRAQ9NZM4 1560 aa32.32■■■□□ 2.77
SKP2-205ENST00000509692 SCRIBQ14160 1630 aa32.22■■■□□ 2.75
SKP2-205ENST00000509692 DNAJC5BQ9UF47 199 aa32.01■■■□□ 2.72
SKP2-205ENST00000509692 SHROOM4Q9ULL8 1493 aa31.87■■■□□ 2.69
SKP2-205ENST00000509692 EIF4G1Q04637 1599 aaKnown RBP31.46■■■□□ 2.63
SKP2-205ENST00000509692 CC2D2AQ9P2K1 1620 aa31.37■■■□□ 2.61
SKP2-205ENST00000509692 CECR2Q9BXF3 1484 aa31.16■■■□□ 2.58
SKP2-205ENST00000509692 SMARCA4P51532 1647 aa30.8■■■□□ 2.52
SKP2-205ENST00000509692 BAZ1AQ9NRL2 1556 aaPredicted RBP30.72■■■□□ 2.51
SKP2-205ENST00000509692 ATAD2BQ9ULI0 1458 aa30.67■■■□□ 2.5
SKP2-205ENST00000509692 NCAPD3P42695 1498 aa30.66■■■□□ 2.5
SKP2-205ENST00000509692 MROH2BQ7Z745 1585 aa30.59■■■□□ 2.49
SKP2-205ENST00000509692 SMARCA2P51531 1590 aa30.58■■■□□ 2.49
SKP2-205ENST00000509692 PEG3Q9GZU2 1588 aa30.49■■■□□ 2.47
SKP2-205ENST00000509692 HMGXB3Q12766 1538 aa30.47■■■□□ 2.47
SKP2-205ENST00000509692 BAZ1BQ9UIG0 1483 aaKnown RBP30.39■■■□□ 2.46
SKP2-205ENST00000509692 WIZO95785 1651 aa30.26■■■□□ 2.44
SKP2-205ENST00000509692 RSF1Q96T23 1441 aaPredicted RBP30.19■■■□□ 2.42
SKP2-205ENST00000509692 NESP48681 1621 aa30.01■■■□□ 2.39
SKP2-205ENST00000509692 TOP2AP11388 1531 aaKnown RBP29.89■■■□□ 2.37
SKP2-205ENST00000509692 ERCC6Q03468 1493 aa29.86■■■□□ 2.37
SKP2-205ENST00000509692 LAMC3Q9Y6N6 1575 aa29.85■■■□□ 2.37
SKP2-205ENST00000509692 CADPSQ9ULU8 1353 aa29.76■■■□□ 2.35
SKP2-205ENST00000509692 PDS5BQ9NTI5 1447 aa29.65■■■□□ 2.34
SKP2-205ENST00000509692 KIF21AQ7Z4S6 1674 aa29.63■■■□□ 2.33
SKP2-205ENST00000509692 CUX2O14529 1486 aa29.58■■■□□ 2.33
SKP2-205ENST00000509692 CCDC88BA6NC98 1476 aa29.57■■■□□ 2.32
SKP2-205ENST00000509692 CFTRP13569 1480 aa29.56■■■□□ 2.32
SKP2-205ENST00000509692 THOC2Q8NI27 1593 aaKnown RBP29.54■■■□□ 2.32
SKP2-205ENST00000509692 FANCD2Q9BXW9 1451 aa29.41■■■□□ 2.3
SKP2-205ENST00000509692 SUPT5HO00267 1087 aaKnown RBP29.41■■■□□ 2.3
SKP2-205ENST00000509692 CEP164Q9UPV0 1460 aa29.37■■■□□ 2.29
SKP2-205ENST00000509692 MRC2Q9UBG0 1479 aa29.36■■■□□ 2.29
SKP2-205ENST00000509692 PRDM2Q13029 1718 aa29.32■■■□□ 2.28
SKP2-205ENST00000509692 WDR62O43379 1518 aa29.28■■■□□ 2.28
SKP2-205ENST00000509692 URB2Q14146 1524 aaKnown RBP29.15■■■□□ 2.26
SKP2-205ENST00000509692 TOPBP1Q92547 1522 aa28.94■■■□□ 2.22
SKP2-205ENST00000509692 ABCC8Q09428 1581 aa28.89■■■□□ 2.21
SKP2-205ENST00000509692 DNMBPQ6XZF7 1577 aa28.88■■■□□ 2.21
SKP2-205ENST00000509692 DNAJC5Q9H3Z4 198 aa28.87■■■□□ 2.21
SKP2-205ENST00000509692 IFT140Q96RY7 1462 aa28.76■■■□□ 2.2
SKP2-205ENST00000509692 ZNF608Q9ULD9 1512 aaPredicted RBP28.7■■■□□ 2.18
SKP2-205ENST00000509692 CUX1P39880 1505 aa28.69■■■□□ 2.18
SKP2-205ENST00000509692 POLA1P09884 1462 aaPredicted RBP28.69■■■□□ 2.18
SKP2-205ENST00000509692 TARBP1Q13395 1621 aaKnown RBP28.64■■■□□ 2.18
SKP2-205ENST00000509692 FGD5Q6ZNL6 1462 aa28.6■■■□□ 2.17
SKP2-205ENST00000509692 RAD54L2Q9Y4B4 1467 aa28.59■■■□□ 2.17
SKP2-205ENST00000509692 SOGA1O94964 1423 aa28.57■■■□□ 2.16
SKP2-205ENST00000509692 EIF4G3O43432 1585 aaKnown RBP28.55■■■□□ 2.16
SKP2-205ENST00000509692 AQRO60306 1485 aaKnown RBP eCLIP28.52■■■□□ 2.164e-6■■■■□ 24.8
SKP2-205ENST00000509692 TDRD9Q8NDG6 1382 aaKnown RBP28.45■■■□□ 2.14
SKP2-205ENST00000509692 WRNQ14191 1432 aaPredicted RBP eCLIP28.44■■■□□ 2.14
SKP2-205ENST00000509692 SYNJ1O43426 1573 aa28.41■■■□□ 2.14
SKP2-205ENST00000509692 TOP2BQ02880 1626 aa28.39■■■□□ 2.14
SKP2-205ENST00000509692 BIVM-ERCC5R4GMW8 1640 aa28.39■■■□□ 2.14
SKP2-205ENST00000509692 WDR97A6NE52 1622 aa28.37■■■□□ 2.13
SKP2-205ENST00000509692 OSCARQ8IYS5 282 aa28.36■■■□□ 2.13
SKP2-205ENST00000509692 ABCA10Q8WWZ4 1543 aa28.31■■■□□ 2.12
SKP2-205ENST00000509692 GAPVD1Q14C86 1478 aa28.23■■■□□ 2.11
SKP2-205ENST00000509692 SNAPC4Q5SXM2 1469 aa28.23■■■□□ 2.11
SKP2-205ENST00000509692 CHD1O14646 1710 aa28.23■■■□□ 2.11
SKP2-205ENST00000509692 GRIN2BQ13224 1484 aa28.22■■■□□ 2.11
SKP2-205ENST00000509692 ABCA5Q8WWZ7 1642 aa28.21■■■□□ 2.11
SKP2-205ENST00000509692 PBRM1Q86U86 1689 aa28.18■■■□□ 2.1
SKP2-205ENST00000509692 FBLN2P98095 1184 aa28.18■■■□□ 2.1
SKP2-205ENST00000509692 MAGI1Q96QZ7 1491 aaPredicted RBP28.16■■■□□ 2.1
SKP2-205ENST00000509692 CHMP7Q8WUX9 453 aaPredicted RBP28.07■■■□□ 2.08
SKP2-205ENST00000509692 SYNJ2O15056 1496 aa28.07■■■□□ 2.08
SKP2-205ENST00000509692 ERICH3Q5RHP9 1530 aa27.95■■■□□ 2.07
SKP2-205ENST00000509692 ADAMTS12P58397 1594 aa27.95■■■□□ 2.06
SKP2-205ENST00000509692 RIMBP3CA6NJZ7 1639 aa27.94■■■□□ 2.06
SKP2-205ENST00000509692 RIMBP3BA6NNM3 1639 aa27.94■■■□□ 2.06
SKP2-205ENST00000509692 RIMBP3Q9UFD9 1639 aa27.94■■■□□ 2.06
SKP2-205ENST00000509692 ARHGEF11O15085 1522 aa27.91■■■□□ 2.06
SKP2-205ENST00000509692 CLASP1Q7Z460 1538 aa27.91■■■□□ 2.06
SKP2-205ENST00000509692 FHAD1B1AJZ9 1412 aa27.88■■■□□ 2.05
SKP2-205ENST00000509692 TRIM41Q8WV44 630 aa27.88■■■□□ 2.05
SKP2-205ENST00000509692 GRIN2AQ12879 1464 aa27.88■■■□□ 2.05
SKP2-205ENST00000509692 KIF27Q86VH2 1401 aa27.84■■■□□ 2.05
SKP2-205ENST00000509692 IGF1RP08069 1367 aa27.79■■■□□ 2.04
SKP2-205ENST00000509692 NUP160Q12769 1436 aa27.77■■■□□ 2.04
SKP2-205ENST00000509692 CEP170Q5SW79 1584 aa27.76■■■□□ 2.03
SKP2-205ENST00000509692 ARAP1Q96P48 1450 aa27.69■■■□□ 2.02
SKP2-205ENST00000509692 CHIC1Q5VXU3 224 aa27.68■■■□□ 2.02
SKP2-205ENST00000509692 CYB5RLQ6IPT4 315 aa27.68■■■□□ 2.02
SKP2-205ENST00000509692 CUL7Q14999 1698 aa27.67■■■□□ 2.02
SKP2-205ENST00000509692 RUSC2Q8N2Y8 1516 aa27.64■■■□□ 2.01
SKP2-205ENST00000509692 CARMIL1Q5VZK9 1371 aa27.6■■■□□ 2.01
SKP2-205ENST00000509692 SHROOM2Q13796 1616 aa27.57■■■□□ 2
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms