RNA–Protein interactions for RNA: ENST00000620197.4

SKP2-209, Transcript of S-phase kinase associated protein 2, humanhuman

TSL 2 BASIC

Gene SKP2, Length 3,255 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP2-209ENST00000620197 NISCHQ9Y2I1 1504 aa27.18■■□□□ 1.94
SKP2-209ENST00000620197 CCDC180Q9P1Z9 1646 aa23.25■■□□□ 1.31
SKP2-209ENST00000620197 ZCCHC6Q5VYS8 1495 aaKnown RBP23.12■■□□□ 1.29
SKP2-209ENST00000620197 SHROOM4Q9ULL8 1493 aa22.76■■□□□ 1.23
SKP2-209ENST00000620197 DCAF1Q9Y4B6 1507 aa22.53■■□□□ 1.2
SKP2-209ENST00000620197 MYO15BQ96JP2 1530 aa22.37■■□□□ 1.17
SKP2-209ENST00000620197 SUPT5HO00267 1087 aaKnown RBP22.35■■□□□ 1.17
SKP2-209ENST00000620197 CHIC1Q5VXU3 224 aa22.17■■□□□ 1.14
SKP2-209ENST00000620197 ABCC9O60706 1549 aa21.92■■□□□ 1.1
SKP2-209ENST00000620197 HRCP23327 699 aa21.91■■□□□ 1.1
SKP2-209ENST00000620197 DCAF8L2P0C7V8 631 aa21.58■■□□□ 1.05
SKP2-209ENST00000620197 RSF1Q96T23 1441 aaPredicted RBP21.51■■□□□ 1.03
SKP2-209ENST00000620197 PCGF6Q9BYE7 350 aa21.47■■□□□ 1.03
SKP2-209ENST00000620197 SCRIBQ14160 1630 aa21.46■■□□□ 1.03
SKP2-209ENST00000620197 RB1CC1Q8TDY2 1594 aa21.44■■□□□ 1.02
SKP2-209ENST00000620197 LOC105371045A0A1W2PR82 267 aa21.35■■□□□ 1.01
SKP2-209ENST00000620197 NACADO15069 1562 aa21.25■□□□□ 0.99
SKP2-209ENST00000620197 PPARGC1BQ86YN6 1023 aaKnown RBP21.22■□□□□ 0.99
SKP2-209ENST00000620197 TRIM26Q12899 539 aaPredicted RBP21.21■□□□□ 0.99
SKP2-209ENST00000620197 EIF4G1Q04637 1599 aaKnown RBP21.18■□□□□ 0.98
SKP2-209ENST00000620197 MROH2BQ7Z745 1585 aa21.08■□□□□ 0.97
SKP2-209ENST00000620197 CECR2Q9BXF3 1484 aa21.05■□□□□ 0.96
SKP2-209ENST00000620197 BAZ1AQ9NRL2 1556 aaPredicted RBP21.04■□□□□ 0.96
SKP2-209ENST00000620197 WIZO95785 1651 aa21.03■□□□□ 0.96
SKP2-209ENST00000620197 TRIM41Q8WV44 630 aa20.91■□□□□ 0.94
SKP2-209ENST00000620197 ZEB1P37275 1124 aaPredicted RBP20.84■□□□□ 0.93
SKP2-209ENST00000620197 UNC13AQ9UPW8 1703 aa20.77■□□□□ 0.92
SKP2-209ENST00000620197 TOP2AP11388 1531 aaKnown RBP20.76■□□□□ 0.91
SKP2-209ENST00000620197 SMARCA4P51532 1647 aa20.7■□□□□ 0.9
SKP2-209ENST00000620197 SMARCA2P51531 1590 aa20.66■□□□□ 0.9
SKP2-209ENST00000620197 WRNQ14191 1432 aaPredicted RBP eCLIP20.61■□□□□ 0.89
SKP2-209ENST00000620197 CCDC88BA6NC98 1476 aa20.54■□□□□ 0.88
SKP2-209ENST00000620197 FAM9AQ8IZU1 332 aaPredicted RBP20.54■□□□□ 0.88
SKP2-209ENST00000620197 ABCC8Q09428 1581 aa20.52■□□□□ 0.88
SKP2-209ENST00000620197 PEG3Q9GZU2 1588 aa20.48■□□□□ 0.87
SKP2-209ENST00000620197 EEA1Q15075 1411 aa20.38■□□□□ 0.85
SKP2-209ENST00000620197 BICRAQ9NZM4 1560 aa20.37■□□□□ 0.85
SKP2-209ENST00000620197 TNIKQ9UKE5 1360 aa20.35■□□□□ 0.85
SKP2-209ENST00000620197 CEP162Q5TB80 1403 aa20.34■□□□□ 0.85
SKP2-209ENST00000620197 SCAF1Q9H7N4 1312 aaKnown RBP20.33■□□□□ 0.85
SKP2-209ENST00000620197 SOGA1O94964 1423 aa20.31■□□□□ 0.84
SKP2-209ENST00000620197 PELP1Q8IZL8 1130 aaKnown RBP20.28■□□□□ 0.84
SKP2-209ENST00000620197 KIF21BO75037 1637 aa20.26■□□□□ 0.83
SKP2-209ENST00000620197 RUSC2Q8N2Y8 1516 aa20.24■□□□□ 0.83
SKP2-209ENST00000620197 SYNJ1O43426 1573 aa20.19■□□□□ 0.82
SKP2-209ENST00000620197 EHMT2Q96KQ7 1210 aa20.18■□□□□ 0.82
SKP2-209ENST00000620197 GOLGA3Q08378 1498 aa20.18■□□□□ 0.82
SKP2-209ENST00000620197 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.14■□□□□ 0.81
SKP2-209ENST00000620197 CSRNP3Q8WYN3 585 aa20.07■□□□□ 0.8
SKP2-209ENST00000620197 BAZ1BQ9UIG0 1483 aaKnown RBP20.05■□□□□ 0.8
SKP2-209ENST00000620197 CEP164Q9UPV0 1460 aa20.05■□□□□ 0.8
SKP2-209ENST00000620197 CCER1Q8TC90 406 aaPredicted RBP20.04■□□□□ 0.8
SKP2-209ENST00000620197 BIVM-ERCC5R4GMW8 1640 aa20.01■□□□□ 0.79
SKP2-209ENST00000620197 ACIN1Q9UKV3 1341 aaKnown RBP20■□□□□ 0.79
SKP2-209ENST00000620197 ATAD2BQ9ULI0 1458 aa19.99■□□□□ 0.79
SKP2-209ENST00000620197 TOP2BQ02880 1626 aa19.98■□□□□ 0.79
SKP2-209ENST00000620197 NEUROD1Q13562 356 aa19.92■□□□□ 0.78
SKP2-209ENST00000620197 VPS8Q8N3P4 1428 aa19.91■□□□□ 0.78
SKP2-209ENST00000620197 DIEXFQ68CQ4 756 aaKnown RBP19.91■□□□□ 0.78
SKP2-209ENST00000620197 CLIP1P30622 1438 aa19.88■□□□□ 0.77
SKP2-209ENST00000620197 ERICH3Q5RHP9 1530 aa19.86■□□□□ 0.77
SKP2-209ENST00000620197 RAPGEF2Q9Y4G8 1499 aa19.85■□□□□ 0.77
SKP2-209ENST00000620197 PRXQ9BXM0 1461 aa19.77■□□□□ 0.76
SKP2-209ENST00000620197 ZNF316A6NFI3 1004 aaPredicted RBP19.77■□□□□ 0.75
SKP2-209ENST00000620197 UBTFP17480 764 aaKnown RBP19.77■□□□□ 0.75
SKP2-209ENST00000620197 HMGXB3Q12766 1538 aa19.74■□□□□ 0.75
SKP2-209ENST00000620197 ARAP1Q96P48 1450 aa19.72■□□□□ 0.75
SKP2-209ENST00000620197 PRDM2Q13029 1718 aa19.71■□□□□ 0.75
SKP2-209ENST00000620197 PABPN1Q86U42 306 aaKnown RBP eCLIP19.7■□□□□ 0.74
SKP2-209ENST00000620197 CENPBP07199 599 aaPredicted RBP19.68■□□□□ 0.74
SKP2-209ENST00000620197 CUX2O14529 1486 aa19.66■□□□□ 0.74
SKP2-209ENST00000620197 GTF3C3Q9Y5Q9 886 aa19.66■□□□□ 0.74
SKP2-209ENST00000620197 CUX1P39880 1505 aa19.64■□□□□ 0.74
SKP2-209ENST00000620197 TTBK1Q5TCY1 1321 aaPredicted RBP19.64■□□□□ 0.73
SKP2-209ENST00000620197 NCAPD3P42695 1498 aa19.61■□□□□ 0.73
SKP2-209ENST00000620197 CLSPNQ9HAW4 1339 aa19.6■□□□□ 0.73
SKP2-209ENST00000620197 RRBP1Q9P2E9 1410 aaKnown RBP19.59■□□□□ 0.73
SKP2-209ENST00000620197 DHX57Q6P158 1386 aaKnown RBP19.54■□□□□ 0.72
SKP2-209ENST00000620197 CFTRP13569 1480 aa19.52■□□□□ 0.72
SKP2-209ENST00000620197 MIER1Q8N108 512 aa19.49■□□□□ 0.71
SKP2-209ENST00000620197 MAP3K1Q13233 1512 aa19.47■□□□□ 0.71
SKP2-209ENST00000620197 HNRNPUL2Q1KMD3 747 aaKnown RBP19.47■□□□□ 0.71
SKP2-209ENST00000620197 ARHGAP35Q9NRY4 1499 aa19.46■□□□□ 0.71
SKP2-209ENST00000620197 KIF27Q86VH2 1401 aa19.42■□□□□ 0.7
SKP2-209ENST00000620197 CFAP43Q8NDM7 1665 aa19.37■□□□□ 0.69
SKP2-209ENST00000620197 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
SKP2-209ENST00000620197 TIAM1Q13009 1591 aa19.36■□□□□ 0.69
SKP2-209ENST00000620197 MYT1Q01538 1121 aa19.35■□□□□ 0.69
SKP2-209ENST00000620197 MAPKBP1O60336 1514 aa19.34■□□□□ 0.69
SKP2-209ENST00000620197 APLP2Q06481 763 aa19.31■□□□□ 0.68
SKP2-209ENST00000620197 CCNB3Q8WWL7 1395 aa19.28■□□□□ 0.68
SKP2-209ENST00000620197 IGF1RP08069 1367 aa19.24■□□□□ 0.67
SKP2-209ENST00000620197 YTHDC1Q96MU7 727 aaKnown RBP19.2■□□□□ 0.66
SKP2-209ENST00000620197 LRRC9Q6ZRR7 1453 aa19.2■□□□□ 0.66
SKP2-209ENST00000620197 PCF11O94913 1555 aaKnown RBP19.17■□□□□ 0.66
SKP2-209ENST00000620197 FGD5Q6ZNL6 1462 aa19.14■□□□□ 0.66
SKP2-209ENST00000620197 RAB3GAP2Q9H2M9 1393 aa19.13■□□□□ 0.65
SKP2-209ENST00000620197 CTTNBP2Q8WZ74 1663 aa19.12■□□□□ 0.65
SKP2-209ENST00000620197 WDR97A6NE52 1622 aa19.11■□□□□ 0.65
SKP2-209ENST00000620197 CC2D2AQ9P2K1 1620 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms