RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 NISCHQ9Y2I1 1504 aa15.78■□□□□ 0.12
CUX1-220ENST00000607092 ABCC9O60706 1549 aa14.27□□□□□ -0.12
CUX1-220ENST00000607092 CCDC180Q9P1Z9 1646 aa14.25□□□□□ -0.13
CUX1-220ENST00000607092 CHIC1Q5VXU3 224 aa13.71□□□□□ -0.21
CUX1-220ENST00000607092 AEBP2Q6ZN18 517 aaPredicted RBP13.64□□□□□ -0.23
CUX1-220ENST00000607092 RB1CC1Q8TDY2 1594 aa13.63□□□□□ -0.23
CUX1-220ENST00000607092 NACADO15069 1562 aa13.52□□□□□ -0.25
CUX1-220ENST00000607092 DNAJC5BQ9UF47 199 aa13.42□□□□□ -0.26
CUX1-220ENST00000607092 DCAF8L2P0C7V8 631 aa13.35□□□□□ -0.27
CUX1-220ENST00000607092 MYO15BQ96JP2 1530 aa13.34□□□□□ -0.27
CUX1-220ENST00000607092 PABPN1Q86U42 306 aaKnown RBP eCLIP13.25□□□□□ -0.29
CUX1-220ENST00000607092 SHROOM4Q9ULL8 1493 aa13.16□□□□□ -0.3
CUX1-220ENST00000607092 UNC13AQ9UPW8 1703 aa13.15□□□□□ -0.3
CUX1-220ENST00000607092 BICRAQ9NZM4 1560 aa13.12□□□□□ -0.31
CUX1-220ENST00000607092 DCAF1Q9Y4B6 1507 aa13.1□□□□□ -0.31
CUX1-220ENST00000607092 ZCCHC6Q5VYS8 1495 aaKnown RBP13.04□□□□□ -0.32
CUX1-220ENST00000607092 CECR2Q9BXF3 1484 aa12.93□□□□□ -0.34
CUX1-220ENST00000607092 CC2D2AQ9P2K1 1620 aa12.89□□□□□ -0.35
CUX1-220ENST00000607092 SCRIBQ14160 1630 aa12.88□□□□□ -0.35
CUX1-220ENST00000607092 EIF4G1Q04637 1599 aaKnown RBP12.86□□□□□ -0.35
CUX1-220ENST00000607092 DNAJC5Q9H3Z4 198 aa12.56□□□□□ -0.4
CUX1-220ENST00000607092 CUX2O14529 1486 aa12.47□□□□□ -0.41
CUX1-220ENST00000607092 NCAPD3P42695 1498 aa12.47□□□□□ -0.41
CUX1-220ENST00000607092 ERCC6Q03468 1493 aa12.42□□□□□ -0.42
CUX1-220ENST00000607092 SMARCA2P51531 1590 aa12.4□□□□□ -0.42
CUX1-220ENST00000607092 ATAD2BQ9ULI0 1458 aa12.37□□□□□ -0.43
CUX1-220ENST00000607092 HMGXB3Q12766 1538 aa12.37□□□□□ -0.43
CUX1-220ENST00000607092 SMARCA4P51532 1647 aa12.31□□□□□ -0.44
CUX1-220ENST00000607092 BAZ1AQ9NRL2 1556 aaPredicted RBP12.3□□□□□ -0.44
CUX1-220ENST00000607092 BAZ1BQ9UIG0 1483 aaKnown RBP12.27□□□□□ -0.44
CUX1-220ENST00000607092 PEG3Q9GZU2 1588 aa12.24□□□□□ -0.45
CUX1-220ENST00000607092 LAMC3Q9Y6N6 1575 aa12.22□□□□□ -0.45
CUX1-220ENST00000607092 PDS5BQ9NTI5 1447 aa12.2□□□□□ -0.46
CUX1-220ENST00000607092 NESP48681 1621 aa12.19□□□□□ -0.46
CUX1-220ENST00000607092 PHF23Q9BUL5 403 aaPredicted RBP12.14□□□□□ -0.47
CUX1-220ENST00000607092 THOC2Q8NI27 1593 aaKnown RBP12.13□□□□□ -0.47
CUX1-220ENST00000607092 MROH2BQ7Z745 1585 aa12.09□□□□□ -0.47
CUX1-220ENST00000607092 CADPSQ9ULU8 1353 aa12.08□□□□□ -0.48
CUX1-220ENST00000607092 MRC2Q9UBG0 1479 aa12.03□□□□□ -0.48
CUX1-220ENST00000607092 KIF21AQ7Z4S6 1674 aa12.03□□□□□ -0.48
CUX1-220ENST00000607092 WDR62O43379 1518 aa11.99□□□□□ -0.49
CUX1-220ENST00000607092 CEP164Q9UPV0 1460 aa11.97□□□□□ -0.49
CUX1-220ENST00000607092 WIZO95785 1651 aa11.91□□□□□ -0.5
CUX1-220ENST00000607092 FANCD2Q9BXW9 1451 aa11.91□□□□□ -0.5
CUX1-220ENST00000607092 CFTRP13569 1480 aa11.9□□□□□ -0.5
CUX1-220ENST00000607092 TRIM41Q8WV44 630 aa11.9□□□□□ -0.5
CUX1-220ENST00000607092 OSCARQ8IYS5 282 aa11.88□□□□□ -0.51
CUX1-220ENST00000607092 TOP2AP11388 1531 aaKnown RBP11.85□□□□□ -0.51
CUX1-220ENST00000607092 RSF1Q96T23 1441 aaPredicted RBP11.84□□□□□ -0.51
CUX1-220ENST00000607092 URB2Q14146 1524 aaKnown RBP11.77□□□□□ -0.52
CUX1-220ENST00000607092 IFT140Q96RY7 1462 aa11.76□□□□□ -0.53
CUX1-220ENST00000607092 ABCC8Q09428 1581 aa11.75□□□□□ -0.53
CUX1-220ENST00000607092 PRDM2Q13029 1718 aa11.73□□□□□ -0.53
CUX1-220ENST00000607092 CCDC88BA6NC98 1476 aa11.68□□□□□ -0.54
CUX1-220ENST00000607092 TOPBP1Q92547 1522 aa11.65□□□□□ -0.54
CUX1-220ENST00000607092 DNMBPQ6XZF7 1577 aa11.63□□□□□ -0.55
CUX1-220ENST00000607092 ZNF608Q9ULD9 1512 aaPredicted RBP11.63□□□□□ -0.55
CUX1-220ENST00000607092 RIMBP3CA6NJZ7 1639 aa11.63□□□□□ -0.55
CUX1-220ENST00000607092 RIMBP3BA6NNM3 1639 aa11.63□□□□□ -0.55
CUX1-220ENST00000607092 RIMBP3Q9UFD9 1639 aa11.63□□□□□ -0.55
CUX1-220ENST00000607092 ARHGEF11O15085 1522 aa11.62□□□□□ -0.55
CUX1-220ENST00000607092 EIF4G3O43432 1585 aaKnown RBP11.59□□□□□ -0.55
CUX1-220ENST00000607092 CYB5RLQ6IPT4 315 aa11.55□□□□□ -0.56
CUX1-220ENST00000607092 WDR97A6NE52 1622 aa11.55□□□□□ -0.56
CUX1-220ENST00000607092 TARBP1Q13395 1621 aaKnown RBP11.54□□□□□ -0.56
CUX1-220ENST00000607092 FBLN2P98095 1184 aa11.54□□□□□ -0.56
CUX1-220ENST00000607092 AQRO60306 1485 aaKnown RBP eCLIP11.54□□□□□ -0.56
CUX1-220ENST00000607092 POLA1P09884 1462 aaPredicted RBP11.54□□□□□ -0.56
CUX1-220ENST00000607092 SOGA1O94964 1423 aa11.52□□□□□ -0.57
CUX1-220ENST00000607092 CHD1O14646 1710 aa11.49□□□□□ -0.57
CUX1-220ENST00000607092 TRHP20396 242 aaPredicted RBP11.49□□□□□ -0.57
CUX1-220ENST00000607092 CHMP7Q8WUX9 453 aaPredicted RBP11.48□□□□□ -0.57
CUX1-220ENST00000607092 MAGI1Q96QZ7 1491 aaPredicted RBP11.48□□□□□ -0.57
CUX1-220ENST00000607092 SYNJ1O43426 1573 aa11.46□□□□□ -0.57
CUX1-220ENST00000607092 ARAP1Q96P48 1450 aa11.46□□□□□ -0.57
CUX1-220ENST00000607092 TDRD9Q8NDG6 1382 aaKnown RBP11.46□□□□□ -0.57
CUX1-220ENST00000607092 GRIN2BQ13224 1484 aa11.45□□□□□ -0.58
CUX1-220ENST00000607092 RAD54L2Q9Y4B4 1467 aa11.44□□□□□ -0.58
CUX1-220ENST00000607092 SENP3Q9H4L4 574 aaPredicted RBP11.44□□□□□ -0.58
CUX1-220ENST00000607092 SNAPC4Q5SXM2 1469 aa11.44□□□□□ -0.58
CUX1-220ENST00000607092 FGD5Q6ZNL6 1462 aa11.44□□□□□ -0.58
CUX1-220ENST00000607092 SYNJ2O15056 1496 aa11.42□□□□□ -0.58
CUX1-220ENST00000607092 CLASP1Q7Z460 1538 aa11.4□□□□□ -0.58
CUX1-220ENST00000607092 CUX1P39880 1505 aa11.37□□□□□ -0.59
CUX1-220ENST00000607092 GAPVD1Q14C86 1478 aa11.37□□□□□ -0.59
CUX1-220ENST00000607092 ABCA10Q8WWZ4 1543 aa11.34□□□□□ -0.59
CUX1-220ENST00000607092 PLPPR3Q6T4P5 718 aa11.32□□□□□ -0.6
CUX1-220ENST00000607092 WRNQ14191 1432 aaPredicted RBP eCLIP11.32□□□□□ -0.62e-14■■■■■ 72.8
CUX1-220ENST00000607092 PBRM1Q86U86 1689 aa11.3□□□□□ -0.6
CUX1-220ENST00000607092 ABCA5Q8WWZ7 1642 aa11.29□□□□□ -0.6
CUX1-220ENST00000607092 GRIN2AQ12879 1464 aa11.27□□□□□ -0.6
CUX1-220ENST00000607092 FHAD1B1AJZ9 1412 aa11.25□□□□□ -0.61
CUX1-220ENST00000607092 NUP160Q12769 1436 aa11.24□□□□□ -0.61
CUX1-220ENST00000607092 ADAMTS12P58397 1594 aa11.22□□□□□ -0.61
CUX1-220ENST00000607092 ERICH3Q5RHP9 1530 aa11.22□□□□□ -0.61
CUX1-220ENST00000607092 TOP2BQ02880 1626 aa11.21□□□□□ -0.61
CUX1-220ENST00000607092 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
CUX1-220ENST00000607092 BIVM-ERCC5R4GMW8 1640 aa11.2□□□□□ -0.62
CUX1-220ENST00000607092 CEP170Q5SW79 1584 aa11.2□□□□□ -0.62
CUX1-220ENST00000607092 SHROOM2Q13796 1616 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms