RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 NISCHQ9Y2I1 1504 aa28.24■■■□□ 2.11
CUX1-210ENST00000497815 CCDC180Q9P1Z9 1646 aa24.93■■□□□ 1.58
CUX1-210ENST00000497815 ABCC9O60706 1549 aa24.2■■□□□ 1.47
CUX1-210ENST00000497815 DCAF8L2P0C7V8 631 aa23.6■■□□□ 1.37
CUX1-210ENST00000497815 ZCCHC6Q5VYS8 1495 aaKnown RBP23.59■■□□□ 1.37
CUX1-210ENST00000497815 NACADO15069 1562 aa23.37■■□□□ 1.33
CUX1-210ENST00000497815 RB1CC1Q8TDY2 1594 aa23.35■■□□□ 1.33
CUX1-210ENST00000497815 DCAF1Q9Y4B6 1507 aa23.33■■□□□ 1.32
CUX1-210ENST00000497815 AEBP2Q6ZN18 517 aaPredicted RBP23.32■■□□□ 1.32
CUX1-210ENST00000497815 MYO15BQ96JP2 1530 aa23.28■■□□□ 1.32
CUX1-210ENST00000497815 SCRIBQ14160 1630 aa22.87■■□□□ 1.25
CUX1-210ENST00000497815 UNC13AQ9UPW8 1703 aa22.81■■□□□ 1.24
CUX1-210ENST00000497815 PABPN1Q86U42 306 aaKnown RBP eCLIP22.7■■□□□ 1.22
CUX1-210ENST00000497815 SHROOM4Q9ULL8 1493 aa22.64■■□□□ 1.21
CUX1-210ENST00000497815 BICRAQ9NZM4 1560 aa22.63■■□□□ 1.21
CUX1-210ENST00000497815 CHIC1Q5VXU3 224 aa22.04■■□□□ 1.12
CUX1-210ENST00000497815 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
CUX1-210ENST00000497815 CECR2Q9BXF3 1484 aa22.01■■□□□ 1.11
CUX1-210ENST00000497815 DNAJC5BQ9UF47 199 aa21.92■■□□□ 1.1
CUX1-210ENST00000497815 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
CUX1-210ENST00000497815 CC2D2AQ9P2K1 1620 aa21.86■■□□□ 1.09
CUX1-210ENST00000497815 SMARCA4P51532 1647 aa21.85■■□□□ 1.09
CUX1-210ENST00000497815 MROH2BQ7Z745 1585 aa21.8■■□□□ 1.08
CUX1-210ENST00000497815 ATAD2BQ9ULI0 1458 aa21.65■■□□□ 1.06
CUX1-210ENST00000497815 RSF1Q96T23 1441 aaPredicted RBP21.65■■□□□ 1.06
CUX1-210ENST00000497815 SMARCA2P51531 1590 aa21.63■■□□□ 1.05
CUX1-210ENST00000497815 WIZO95785 1651 aa21.6■■□□□ 1.05
CUX1-210ENST00000497815 PEG3Q9GZU2 1588 aa21.59■■□□□ 1.05
CUX1-210ENST00000497815 NCAPD3P42695 1498 aa21.57■■□□□ 1.04
CUX1-210ENST00000497815 BAZ1BQ9UIG0 1483 aaKnown RBP21.52■■□□□ 1.04
CUX1-210ENST00000497815 HMGXB3Q12766 1538 aa21.49■■□□□ 1.03
CUX1-210ENST00000497815 SUPT5HO00267 1087 aaKnown RBP21.45■■□□□ 1.02
CUX1-210ENST00000497815 TOP2AP11388 1531 aaKnown RBP21.35■■□□□ 1.01
CUX1-210ENST00000497815 CCDC88BA6NC98 1476 aa21.13■□□□□ 0.97
CUX1-210ENST00000497815 NESP48681 1621 aa21.03■□□□□ 0.96
CUX1-210ENST00000497815 CADPSQ9ULU8 1353 aa20.98■□□□□ 0.95
CUX1-210ENST00000497815 LAMC3Q9Y6N6 1575 aa20.95■□□□□ 0.94
CUX1-210ENST00000497815 CFTRP13569 1480 aa20.91■□□□□ 0.94
CUX1-210ENST00000497815 ERCC6Q03468 1493 aa20.82■□□□□ 0.92
CUX1-210ENST00000497815 PDS5BQ9NTI5 1447 aa20.82■□□□□ 0.92
CUX1-210ENST00000497815 FANCD2Q9BXW9 1451 aa20.76■□□□□ 0.91
CUX1-210ENST00000497815 KIF21AQ7Z4S6 1674 aa20.76■□□□□ 0.91
CUX1-210ENST00000497815 PRDM2Q13029 1718 aa20.75■□□□□ 0.91
CUX1-210ENST00000497815 CEP164Q9UPV0 1460 aa20.7■□□□□ 0.9
CUX1-210ENST00000497815 MRC2Q9UBG0 1479 aa20.61■□□□□ 0.89
CUX1-210ENST00000497815 THOC2Q8NI27 1593 aaKnown RBP20.59■□□□□ 0.89
CUX1-210ENST00000497815 URB2Q14146 1524 aaKnown RBP20.54■□□□□ 0.88
CUX1-210ENST00000497815 WDR62O43379 1518 aa20.5■□□□□ 0.87
CUX1-210ENST00000497815 ABCC8Q09428 1581 aa20.48■□□□□ 0.87
CUX1-210ENST00000497815 TOPBP1Q92547 1522 aa20.46■□□□□ 0.87
CUX1-210ENST00000497815 DNMBPQ6XZF7 1577 aa20.45■□□□□ 0.86
CUX1-210ENST00000497815 CUX1P39880 1505 aa20.43■□□□□ 0.86
CUX1-210ENST00000497815 WRNQ14191 1432 aaPredicted RBP eCLIP20.42■□□□□ 0.862e-6■■■■■ 54.1
CUX1-210ENST00000497815 CUX2O14529 1486 aa20.42■□□□□ 0.86
CUX1-210ENST00000497815 SYNJ1O43426 1573 aa20.37■□□□□ 0.85
CUX1-210ENST00000497815 FGD5Q6ZNL6 1462 aa20.32■□□□□ 0.84
CUX1-210ENST00000497815 TOP2BQ02880 1626 aa20.31■□□□□ 0.84
CUX1-210ENST00000497815 BIVM-ERCC5R4GMW8 1640 aa20.31■□□□□ 0.84
CUX1-210ENST00000497815 POLA1P09884 1462 aaPredicted RBP20.3■□□□□ 0.84
CUX1-210ENST00000497815 RAD54L2Q9Y4B4 1467 aa20.25■□□□□ 0.83
CUX1-210ENST00000497815 SOGA1O94964 1423 aa20.25■□□□□ 0.83
CUX1-210ENST00000497815 IFT140Q96RY7 1462 aa20.24■□□□□ 0.83
CUX1-210ENST00000497815 TRIM41Q8WV44 630 aa20.21■□□□□ 0.83
CUX1-210ENST00000497815 TARBP1Q13395 1621 aaKnown RBP20.2■□□□□ 0.82
CUX1-210ENST00000497815 ZNF608Q9ULD9 1512 aaPredicted RBP20.16■□□□□ 0.82
CUX1-210ENST00000497815 TDRD9Q8NDG6 1382 aaKnown RBP20.12■□□□□ 0.81
CUX1-210ENST00000497815 ABCA10Q8WWZ4 1543 aa20.1■□□□□ 0.81
CUX1-210ENST00000497815 WDR97A6NE52 1622 aa20.09■□□□□ 0.81
CUX1-210ENST00000497815 AQRO60306 1485 aaKnown RBP eCLIP20.09■□□□□ 0.812e-6■■■□□ 18.3
CUX1-210ENST00000497815 EIF4G3O43432 1585 aaKnown RBP20.08■□□□□ 0.8
CUX1-210ENST00000497815 SENP3Q9H4L4 574 aaPredicted RBP20.07■□□□□ 0.8
CUX1-210ENST00000497815 GAPVD1Q14C86 1478 aa20■□□□□ 0.79
CUX1-210ENST00000497815 ABCA5Q8WWZ7 1642 aa20■□□□□ 0.79
CUX1-210ENST00000497815 KIF27Q86VH2 1401 aa19.96■□□□□ 0.79
CUX1-210ENST00000497815 GRIN2BQ13224 1484 aa19.95■□□□□ 0.78
CUX1-210ENST00000497815 PBRM1Q86U86 1689 aa19.94■□□□□ 0.78
CUX1-210ENST00000497815 RUSC2Q8N2Y8 1516 aa19.92■□□□□ 0.78
CUX1-210ENST00000497815 SNAPC4Q5SXM2 1469 aa19.91■□□□□ 0.78
CUX1-210ENST00000497815 ERICH3Q5RHP9 1530 aa19.86■□□□□ 0.77
CUX1-210ENST00000497815 FAM9AQ8IZU1 332 aaPredicted RBP19.85■□□□□ 0.77
CUX1-210ENST00000497815 MAGI1Q96QZ7 1491 aaPredicted RBP19.85■□□□□ 0.77
CUX1-210ENST00000497815 IGF1RP08069 1367 aa19.84■□□□□ 0.77
CUX1-210ENST00000497815 FBLN2P98095 1184 aa19.84■□□□□ 0.77
CUX1-210ENST00000497815 ADAMTS12P58397 1594 aa19.8■□□□□ 0.76
CUX1-210ENST00000497815 CHMP7Q8WUX9 453 aaPredicted RBP19.79■□□□□ 0.76
CUX1-210ENST00000497815 SYNJ2O15056 1496 aa19.79■□□□□ 0.76
CUX1-210ENST00000497815 FHAD1B1AJZ9 1412 aa19.77■□□□□ 0.76
CUX1-210ENST00000497815 CHD1O14646 1710 aa19.76■□□□□ 0.75
CUX1-210ENST00000497815 EEA1Q15075 1411 aa19.76■□□□□ 0.75
CUX1-210ENST00000497815 CUL7Q14999 1698 aa19.75■□□□□ 0.75
CUX1-210ENST00000497815 PHF23Q9BUL5 403 aaPredicted RBP19.75■□□□□ 0.75
CUX1-210ENST00000497815 CARMIL1Q5VZK9 1371 aa19.74■□□□□ 0.75
CUX1-210ENST00000497815 CSRNP3Q8WYN3 585 aa19.74■□□□□ 0.75
CUX1-210ENST00000497815 GRIN2AQ12879 1464 aa19.7■□□□□ 0.74
CUX1-210ENST00000497815 OSCARQ8IYS5 282 aa19.68■□□□□ 0.74
CUX1-210ENST00000497815 RAPGEF2Q9Y4G8 1499 aa19.65■□□□□ 0.74
CUX1-210ENST00000497815 PRXQ9BXM0 1461 aa19.64■□□□□ 0.73
CUX1-210ENST00000497815 EHMT2Q96KQ7 1210 aa19.62■□□□□ 0.73
CUX1-210ENST00000497815 CEP170Q5SW79 1584 aa19.6■□□□□ 0.73
CUX1-210ENST00000497815 NUP160Q12769 1436 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms