RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 NISCHQ9Y2I1 1504 aa22.65■■□□□ 1.22
CUX1-216ENST00000558469 AEBP2Q6ZN18 517 aaPredicted RBP21.9■■□□□ 1.1
CUX1-216ENST00000558469 CHIC1Q5VXU3 224 aa21.06■□□□□ 0.96
CUX1-216ENST00000558469 CCDC180Q9P1Z9 1646 aa20.01■□□□□ 0.79
CUX1-216ENST00000558469 ABCC9O60706 1549 aa19.22■□□□□ 0.67
CUX1-216ENST00000558469 ZCCHC6Q5VYS8 1495 aaKnown RBP18.92■□□□□ 0.62
CUX1-216ENST00000558469 DCAF8L2P0C7V8 631 aa18.83■□□□□ 0.6
CUX1-216ENST00000558469 DCAF1Q9Y4B6 1507 aa18.72■□□□□ 0.59
CUX1-216ENST00000558469 NACADO15069 1562 aa18.69■□□□□ 0.58
CUX1-216ENST00000558469 MYO15BQ96JP2 1530 aa18.65■□□□□ 0.58
CUX1-216ENST00000558469 RB1CC1Q8TDY2 1594 aa18.64■□□□□ 0.58
CUX1-216ENST00000558469 SENP3Q9H4L4 574 aaPredicted RBP18.62■□□□□ 0.57
CUX1-216ENST00000558469 PHF23Q9BUL5 403 aaPredicted RBP18.5■□□□□ 0.55
CUX1-216ENST00000558469 UNC13AQ9UPW8 1703 aa18.34■□□□□ 0.53
CUX1-216ENST00000558469 SCRIBQ14160 1630 aa18.31■□□□□ 0.52
CUX1-216ENST00000558469 SHROOM4Q9ULL8 1493 aa18.16■□□□□ 0.5
CUX1-216ENST00000558469 BICRAQ9NZM4 1560 aa18.07■□□□□ 0.48
CUX1-216ENST00000558469 PABPN1Q86U42 306 aaKnown RBP eCLIP18.02■□□□□ 0.48
CUX1-216ENST00000558469 CECR2Q9BXF3 1484 aa17.61■□□□□ 0.41
CUX1-216ENST00000558469 EIF4G1Q04637 1599 aaKnown RBP17.56■□□□□ 0.4
CUX1-216ENST00000558469 SMARCA4P51532 1647 aa17.53■□□□□ 0.4
CUX1-216ENST00000558469 BAZ1AQ9NRL2 1556 aaPredicted RBP17.53■□□□□ 0.4
CUX1-216ENST00000558469 MROH2BQ7Z745 1585 aa17.48■□□□□ 0.39
CUX1-216ENST00000558469 CC2D2AQ9P2K1 1620 aa17.43■□□□□ 0.38
CUX1-216ENST00000558469 RSF1Q96T23 1441 aaPredicted RBP17.38■□□□□ 0.37
CUX1-216ENST00000558469 WIZO95785 1651 aa17.36■□□□□ 0.37
CUX1-216ENST00000558469 FOXD1Q16676 465 aa17.33■□□□□ 0.36
CUX1-216ENST00000558469 SMARCA2P51531 1590 aa17.31■□□□□ 0.36
CUX1-216ENST00000558469 PEG3Q9GZU2 1588 aa17.31■□□□□ 0.36
CUX1-216ENST00000558469 DNAJC5BQ9UF47 199 aa17.3■□□□□ 0.36
CUX1-216ENST00000558469 ATAD2BQ9ULI0 1458 aa17.3■□□□□ 0.36
CUX1-216ENST00000558469 SUPT5HO00267 1087 aaKnown RBP17.27■□□□□ 0.36
CUX1-216ENST00000558469 NCAPD3P42695 1498 aa17.21■□□□□ 0.35
CUX1-216ENST00000558469 BAZ1BQ9UIG0 1483 aaKnown RBP17.19■□□□□ 0.34
CUX1-216ENST00000558469 HMGXB3Q12766 1538 aa17.19■□□□□ 0.34
CUX1-216ENST00000558469 TOP2AP11388 1531 aaKnown RBP17.13■□□□□ 0.33
CUX1-216ENST00000558469 PLPPR3Q6T4P5 718 aa16.96■□□□□ 0.31
CUX1-216ENST00000558469 CCDC88BA6NC98 1476 aa16.94■□□□□ 0.3
CUX1-216ENST00000558469 PRDM2Q13029 1718 aa16.76■□□□□ 0.27
CUX1-216ENST00000558469 NESP48681 1621 aa16.74■□□□□ 0.27
CUX1-216ENST00000558469 LAMC3Q9Y6N6 1575 aa16.74■□□□□ 0.27
CUX1-216ENST00000558469 CADPSQ9ULU8 1353 aa16.74■□□□□ 0.27
CUX1-216ENST00000558469 CFTRP13569 1480 aa16.72■□□□□ 0.27
CUX1-216ENST00000558469 KIF21AQ7Z4S6 1674 aa16.62■□□□□ 0.25
CUX1-216ENST00000558469 PDS5BQ9NTI5 1447 aa16.6■□□□□ 0.25
CUX1-216ENST00000558469 FANCD2Q9BXW9 1451 aa16.57■□□□□ 0.24
CUX1-216ENST00000558469 ERCC6Q03468 1493 aa16.54■□□□□ 0.24
CUX1-216ENST00000558469 CEP164Q9UPV0 1460 aa16.52■□□□□ 0.23
CUX1-216ENST00000558469 ABCC8Q09428 1581 aa16.47■□□□□ 0.23
CUX1-216ENST00000558469 PPP6R1Q9UPN7 881 aa16.44■□□□□ 0.22
CUX1-216ENST00000558469 ADRA2BP18089 450 aa16.42■□□□□ 0.22
CUX1-216ENST00000558469 THOC2Q8NI27 1593 aaKnown RBP16.42■□□□□ 0.22
CUX1-216ENST00000558469 MRC2Q9UBG0 1479 aa16.41■□□□□ 0.22
CUX1-216ENST00000558469 URB2Q14146 1524 aaKnown RBP16.39■□□□□ 0.21
CUX1-216ENST00000558469 WRNQ14191 1432 aaPredicted RBP eCLIP16.38■□□□□ 0.216e-6■■■□□ 16.7
CUX1-216ENST00000558469 DNMBPQ6XZF7 1577 aa16.38■□□□□ 0.21
CUX1-216ENST00000558469 CUX1P39880 1505 aa16.37■□□□□ 0.21
CUX1-216ENST00000558469 SYNJ1O43426 1573 aa16.36■□□□□ 0.21
CUX1-216ENST00000558469 TOPBP1Q92547 1522 aa16.35■□□□□ 0.21
CUX1-216ENST00000558469 BIVM-ERCC5R4GMW8 1640 aa16.35■□□□□ 0.21
CUX1-216ENST00000558469 WDR62O43379 1518 aa16.35■□□□□ 0.21
CUX1-216ENST00000558469 TOP2BQ02880 1626 aa16.34■□□□□ 0.21
CUX1-216ENST00000558469 PIAS4Q8N2W9 510 aaPredicted RBP16.28■□□□□ 0.2
CUX1-216ENST00000558469 TRIM41Q8WV44 630 aa16.27■□□□□ 0.2
CUX1-216ENST00000558469 FGD5Q6ZNL6 1462 aa16.25■□□□□ 0.19
CUX1-216ENST00000558469 POLA1P09884 1462 aaPredicted RBP16.22■□□□□ 0.19
CUX1-216ENST00000558469 CUX2O14529 1486 aa16.19■□□□□ 0.18
CUX1-216ENST00000558469 SOGA1O94964 1423 aa16.18■□□□□ 0.18
CUX1-216ENST00000558469 RAD54L2Q9Y4B4 1467 aa16.17■□□□□ 0.18
CUX1-216ENST00000558469 TARBP1Q13395 1621 aaKnown RBP16.17■□□□□ 0.18
CUX1-216ENST00000558469 WDR97A6NE52 1622 aa16.15■□□□□ 0.18
CUX1-216ENST00000558469 IFT140Q96RY7 1462 aa16.14■□□□□ 0.17
CUX1-216ENST00000558469 ABCA10Q8WWZ4 1543 aa16.09■□□□□ 0.17
CUX1-216ENST00000558469 MSH5O43196 834 aa16.09■□□□□ 0.17
CUX1-216ENST00000558469 ZNF608Q9ULD9 1512 aaPredicted RBP16.06■□□□□ 0.16
CUX1-216ENST00000558469 EIF4G3O43432 1585 aaKnown RBP16.04■□□□□ 0.16
CUX1-216ENST00000558469 TDRD9Q8NDG6 1382 aaKnown RBP16.04■□□□□ 0.16
CUX1-216ENST00000558469 ABCA5Q8WWZ7 1642 aa16.03■□□□□ 0.16
CUX1-216ENST00000558469 AQRO60306 1485 aaKnown RBP eCLIP16.03■□□□□ 0.16
CUX1-216ENST00000558469 PBRM1Q86U86 1689 aa16.02■□□□□ 0.16
CUX1-216ENST00000558469 RUSC2Q8N2Y8 1516 aa16.01■□□□□ 0.15
CUX1-216ENST00000558469 KIF27Q86VH2 1401 aa16.01■□□□□ 0.15
CUX1-216ENST00000558469 GAPVD1Q14C86 1478 aa16■□□□□ 0.15
CUX1-216ENST00000558469 FAM9AQ8IZU1 332 aaPredicted RBP15.95■□□□□ 0.14
CUX1-216ENST00000558469 GRIN2BQ13224 1484 aa15.93■□□□□ 0.14
CUX1-216ENST00000558469 EEA1Q15075 1411 aa15.93■□□□□ 0.14
CUX1-216ENST00000558469 ERICH3Q5RHP9 1530 aa15.92■□□□□ 0.14
CUX1-216ENST00000558469 IGF1RP08069 1367 aa15.89■□□□□ 0.13
CUX1-216ENST00000558469 CUL7Q14999 1698 aa15.89■□□□□ 0.13
CUX1-216ENST00000558469 SNAPC4Q5SXM2 1469 aa15.87■□□□□ 0.13
CUX1-216ENST00000558469 CSRNP3Q8WYN3 585 aa15.87■□□□□ 0.13
CUX1-216ENST00000558469 MAGI1Q96QZ7 1491 aaPredicted RBP15.85■□□□□ 0.13
CUX1-216ENST00000558469 ADAMTS12P58397 1594 aa15.84■□□□□ 0.13
CUX1-216ENST00000558469 CHD1O14646 1710 aa15.82■□□□□ 0.12
CUX1-216ENST00000558469 CARMIL1Q5VZK9 1371 aa15.82■□□□□ 0.12
CUX1-216ENST00000558469 FHAD1B1AJZ9 1412 aa15.8■□□□□ 0.12
CUX1-216ENST00000558469 SYNJ2O15056 1496 aa15.79■□□□□ 0.12
CUX1-216ENST00000558469 PRXQ9BXM0 1461 aa15.78■□□□□ 0.12
CUX1-216ENST00000558469 FBLN2P98095 1184 aa15.78■□□□□ 0.12
CUX1-216ENST00000558469 KIF21BO75037 1637 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms