Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.643e-6■■■■□ 22.9
SF3B1O75533 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.583e-6■■■■□ 22.9
SF3B1O75533 RECQL4-205ENST00000532846 1055 ntTSL 518.55■□□□□ 0.563e-6■■■■□ 22.9
SF3B1O75533 ARHGEF2-216ENST00000495070 571 ntTSL 418.24■□□□□ 0.513e-6■■■■□ 22.9
SF3B1O75533 BAG6-246ENST00000438149 714 ntTSL 317.98■□□□□ 0.473e-6■■■■□ 22.9
SF3B1O75533 RINT1-206ENST00000493041 563 ntTSL 516.78■□□□□ 0.283e-6■■■■□ 22.9
SF3B1O75533 DNASE2-204ENST00000592506 745 ntTSL 216.78■□□□□ 0.283e-6■■■■□ 22.9
SF3B1O75533 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.223e-6■■■■□ 22.9
SF3B1O75533 RINT1-205ENST00000482041 578 ntTSL 416.04■□□□□ 0.163e-6■■■■□ 22.9
SF3B1O75533 SAR1A-203ENST00000373239 468 ntTSL 315.37■□□□□ 0.053e-6■■■■□ 22.9
SF3B1O75533 ARHGEF2-213ENST00000476273 668 ntTSL 315.27■□□□□ 0.043e-6■■■■□ 22.9
SF3B1O75533 RINT1-202ENST00000467392 837 ntTSL 315.18■□□□□ 0.023e-6■■■■□ 22.9
SF3B1O75533 C11orf58-202ENST00000524439 405 ntTSL 314.43□□□□□ -0.13e-6■■■■□ 22.9
SF3B1O75533 C11orf58-207ENST00000525684 575 ntTSL 2 BASIC14.36□□□□□ -0.113e-6■■■■□ 22.9
SF3B1O75533 C11orf58-209ENST00000528634 776 ntTSL 5 BASIC14.36□□□□□ -0.113e-6■■■■□ 22.9
SF3B1O75533 NAMPT-209ENST00000484527 833 ntTSL 314.33□□□□□ -0.123e-6■■■■□ 22.9
SF3B1O75533 C11orf58-206ENST00000525256 762 ntTSL 214.28□□□□□ -0.123e-6■■■■□ 22.9
SF3B1O75533 PDHA1-209ENST00000479146 535 ntTSL 214.24□□□□□ -0.133e-6■■■■□ 22.9
SF3B1O75533 PRSS21-206ENST00000574265 860 ntTSL 313.91□□□□□ -0.183e-6■■■■□ 22.9
SF3B1O75533 DNASE2-203ENST00000588777 727 ntTSL 213.4□□□□□ -0.263e-6■■■■□ 22.9
SF3B1O75533 BAG6-252ENST00000453833 554 ntTSL 513.13□□□□□ -0.313e-6■■■■□ 22.9
SF3B1O75533 BAG6-256ENST00000462682 349 ntTSL 212.57□□□□□ -0.43e-6■■■■□ 22.9
SF3B1O75533 ARHGEF2-211ENST00000471589 892 ntTSL 512.39□□□□□ -0.433e-6■■■■□ 22.9
SF3B1O75533 ARHGEF2-207ENST00000465079 693 ntTSL 212.07□□□□□ -0.483e-6■■■■□ 22.9
SF3B1O75533 TMUB1-207ENST00000492838 550 ntTSL 512.01□□□□□ -0.493e-6■■■■□ 22.9
SF3B1O75533 MTHFR-208ENST00000423400 479 ntTSL 1 (best)11.99□□□□□ -0.493e-6■■■■□ 22.9
SF3B1O75533 DNASE2-202ENST00000586547 707 ntTSL 211.32□□□□□ -0.63e-6■■■■□ 22.9
SF3B1O75533 C11orf58-208ENST00000527893 813 ntTSL 410.93□□□□□ -0.663e-6■■■■□ 22.9
SF3B1O75533 MTHFR-209ENST00000431243 1116 ntTSL 1 (best)10.68□□□□□ -0.73e-6■■■■□ 22.9
SF3B1O75533 CUL4B-203ENST00000371323 846 ntTSL 510.5□□□□□ -0.733e-6■■■■□ 22.9
SF3B1O75533 BAG6-261ENST00000469182 653 ntTSL 310.23□□□□□ -0.773e-6■■■■□ 22.9
SF3B1O75533 PRSS21-209ENST00000575739 378 ntTSL 39.88□□□□□ -0.833e-6■■■■□ 22.9
SF3B1O75533 SUPT5H-211ENST00000598459 548 ntTSL 59.56□□□□□ -0.883e-6■■■■□ 22.9
SF3B1O75533 CREG1-202ENST00000466652 794 ntTSL 39.12□□□□□ -0.953e-6■■■■□ 22.9
SF3B1O75533 TPTEP1-201ENST00000383140 971 ntTSL 1 (best)8.58□□□□□ -1.043e-6■■■■□ 22.9
SF3B1O75533 SMG1P1-202ENST00000309865 4223 ntBASIC8.53□□□□□ -1.043e-6■■■■□ 22.9
SF3B1O75533 SMG1P1-201ENST00000308347 1058 ntTSL 58.4□□□□□ -1.063e-6■■■■□ 22.9
SF3B1O75533 NUP214-214ENST00000525561 487 ntTSL 47.5□□□□□ -1.213e-6■■■■□ 22.9
SF3B1O75533 SUPT5H-205ENST00000593727 493 ntTSL 37.44□□□□□ -1.223e-6■■■■□ 22.9
SF3B1O75533 MCU-210ENST00000605416 2288 ntTSL 27.02□□□□□ -1.293e-6■■■■□ 22.9
SF3B1O75533 MCU-205ENST00000603118 544 ntTSL 26.91□□□□□ -1.33e-6■■■■□ 22.9
SF3B1O75533 CCDC88A-203ENST00000412148 2880 ntTSL 1 (best)5.95□□□□□ -1.463e-6■■■■□ 22.9
SF3B1O75533 AP2B1-201ENST00000587805 690 ntTSL 25.08□□□□□ -1.63e-6■■■■□ 22.9
SF3B1O75533 ASH2L-209ENST00000522675 345 ntTSL 53.75□□□□□ -1.813e-6■■■■□ 22.9
SF3B1O75533 CCDC88A-208ENST00000444458 4236 ntTSL 22.24□□□□□ -2.053e-6■■■■□ 22.9
SF3B1O75533 ASH2L-211ENST00000524263 726 ntTSL 31.81□□□□□ -2.123e-6■■■■□ 22.9
SF3B1O75533 PRKDC-210ENST00000541488 719 ntTSL 31.77□□□□□ -2.133e-11■■■■□ 22.9
SF3B1O75533 ZNF451-209ENST00000502749 790 ntTSL 521.17■□□□□ 0.982e-6■■■■□ 22.9
SF3B1O75533 RIF1-211ENST00000494333 743 ntTSL 38.81□□□□□ -13e-6■■■■□ 22.9
SF3B1O75533 SREK1-212ENST00000522912 2047 ntTSL 1 (best)17.41■□□□□ 0.382e-6■■■■□ 22.8
SF3B1O75533 SREK1-209ENST00000520953 2172 ntTSL 515.94■□□□□ 0.142e-6■■■■□ 22.8
SF3B1O75533 SREK1-202ENST00000334121 6781 ntAPPRIS P1 TSL 2 BASIC11.27□□□□□ -0.612e-6■■■■□ 22.8
SF3B1O75533 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC6.15□□□□□ -1.432e-6■■■■□ 22.8
SF3B1O75533 BMP2K-203ENST00000502613 6902 ntTSL 1 (best)5.11□□□□□ -1.591e-6■■■■□ 22.8
SF3B1O75533 ANKRD10-209ENST00000489973 745 ntTSL 39.69□□□□□ -0.861e-6■■■■□ 22.8
SF3B1O75533 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.361e-6■■■■□ 22.8
SF3B1O75533 MRPS6-202ENST00000477091 1061 ntTSL 519.19■□□□□ 0.665e-7■■■■□ 22.8
SF3B1O75533 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.365e-7■■■■□ 22.8
SF3B1O75533 MRPS6-205ENST00000488492 909 ntTSL 56.63□□□□□ -1.355e-7■■■■□ 22.8
SF3B1O75533 SLC5A3-201ENST00000381151 11576 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.835e-7■■■■□ 22.8
SF3B1O75533 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.211e-7■■■■□ 22.8
SF3B1O75533 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.051e-7■■■■□ 22.8
SF3B1O75533 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -01e-7■■■■□ 22.8
SF3B1O75533 GLUL-204ENST00000417584 4065 ntAPPRIS P1 TSL 5 BASIC12.63□□□□□ -0.391e-7■■■■□ 22.8
SF3B1O75533 GLUL-207ENST00000463851 939 ntTSL 310.89□□□□□ -0.671e-7■■■■□ 22.8
SF3B1O75533 GLUL-212ENST00000491322 6132 ntTSL 1 (best)10.13□□□□□ -0.791e-7■■■■□ 22.8
SF3B1O75533 SREK1-206ENST00000519259 9353 ntTSL 24.13□□□□□ -1.753e-6■■■■□ 22.7
SF3B1O75533 SREK1-201ENST00000284041 3751 ntTSL 1 (best)3.63□□□□□ -1.833e-6■■■■□ 22.7
SF3B1O75533 HDAC7-221ENST00000477203 3122 ntTSL 213.62□□□□□ -0.233e-6■■■■□ 22.7
SF3B1O75533 HDAC7-203ENST00000380610 3261 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.253e-6■■■■□ 22.7
SF3B1O75533 SRSF4-206ENST00000605204 1399 ntTSL 1 (best)21■□□□□ 0.951e-6■■■■□ 22.6
SF3B1O75533 WDR55-202ENST00000504897 2953 ntTSL 215.38■□□□□ 0.052e-10■■■■□ 22.6
SF3B1O75533 WDR55-205ENST00000520764 1696 ntTSL 215□□□□□ -0.012e-10■■■■□ 22.6
SF3B1O75533 WDR55-203ENST00000506393 2477 ntTSL 213.27□□□□□ -0.292e-10■■■■□ 22.6
SF3B1O75533 WDR55-204ENST00000511232 3812 ntTSL 210.51□□□□□ -0.732e-10■■■■□ 22.6
SF3B1O75533 WDR55-201ENST00000358337 4080 ntAPPRIS P1 TSL 1 (best) BASIC10.41□□□□□ -0.742e-10■■■■□ 22.6
SF3B1O75533 RABGGTB-204ENST00000461653 1702 ntTSL 54.37□□□□□ -1.717e-7■■■■□ 22.6
SF3B1O75533 SNHG1-214ENST00000540865 784 ntTSL 55.12□□□□□ -1.592e-7■■■■□ 22.6
SF3B1O75533 SNHG1-220ENST00000544550 636 ntTSL 24.55□□□□□ -1.682e-7■■■■□ 22.6
SF3B1O75533 SNHG1-224ENST00000545688 610 ntTSL 32.62□□□□□ -1.992e-7■■■■□ 22.6
SF3B1O75533 RNU12-201ENST00000362512 150 ntBASIC12.88□□□□□ -0.351e-323■■■■□ 22.6
SF3B1O75533 Z93241.1-201ENST00000602478 664 ntBASIC11.74□□□□□ -0.531e-323■■■■□ 22.6
SF3B1O75533 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC24.45■■□□□ 1.51e-6■■■■□ 22.5
SF3B1O75533 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC23.75■■□□□ 1.391e-6■■■■□ 22.5
SF3B1O75533 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.921e-6■■■■□ 22.5
SF3B1O75533 EZH2-209ENST00000492143 3641 ntTSL 217.32■□□□□ 0.361e-6■■■■□ 22.5
SF3B1O75533 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.071e-6■■■■□ 22.5
SF3B1O75533 EZH2-203ENST00000460911 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC7.81□□□□□ -1.161e-6■■■■□ 22.5
SF3B1O75533 PTBP1-207ENST00000585932 1030 ntTSL 322.8■■□□□ 1.245e-7■■■■□ 22.5
SF3B1O75533 HMGB2-204ENST00000506267 629 ntTSL 324.6■■□□□ 1.532e-6■■■■□ 22.5
SF3B1O75533 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.332e-6■■■■□ 22.5
SF3B1O75533 HMGB2-201ENST00000296503 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.312e-6■■■■□ 22.5
SF3B1O75533 HMGB2-205ENST00000511316 1841 ntTSL 213.11□□□□□ -0.312e-6■■■■□ 22.5
SF3B1O75533 FXR1-208ENST00000469882 570 ntTSL 312.37□□□□□ -0.438e-6■■■■□ 22.5
SF3B1O75533 FXR1-213ENST00000479176 541 ntTSL 211.54□□□□□ -0.568e-6■■■■□ 22.5
SF3B1O75533 FXR1-206ENST00000465551 572 ntTSL 410.09□□□□□ -0.798e-6■■■■□ 22.5
SF3B1O75533 FXR1-218ENST00000484790 571 ntTSL 44.91□□□□□ -1.628e-6■■■■□ 22.5
SF3B1O75533 FXR1-219ENST00000484958 824 ntTSL 34.9□□□□□ -1.638e-6■■■■□ 22.5
SF3B1O75533 FXR1-217ENST00000484042 562 ntTSL 44.11□□□□□ -1.758e-6■■■■□ 22.5
SF3B1O75533 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.895e-6■■■■□ 22.4
Retrieved 100 of 46,956 protein–RNA pairs in 2793.7 ms