RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 NISCHQ9Y2I1 1504 aa11.85□□□□□ -0.51
CCDC88A-203ENST00000412148 AEBP2Q6ZN18 517 aaPredicted RBP10.89□□□□□ -0.67
CCDC88A-203ENST00000412148 CHIC1Q5VXU3 224 aa10.85□□□□□ -0.67
CCDC88A-203ENST00000412148 CCDC180Q9P1Z9 1646 aa10.25□□□□□ -0.77
CCDC88A-203ENST00000412148 ZCCHC6Q5VYS8 1495 aaKnown RBP10.09□□□□□ -0.79
CCDC88A-203ENST00000412148 DCAF1Q9Y4B6 1507 aa9.93□□□□□ -0.82
CCDC88A-203ENST00000412148 PHF23Q9BUL5 403 aaPredicted RBP9.8□□□□□ -0.84
CCDC88A-203ENST00000412148 SHROOM4Q9ULL8 1493 aa9.74□□□□□ -0.85
CCDC88A-203ENST00000412148 MYO15BQ96JP2 1530 aa9.64□□□□□ -0.87
CCDC88A-203ENST00000412148 SUPT5HO00267 1087 aaKnown RBP9.61□□□□□ -0.87
CCDC88A-203ENST00000412148 ABCC9O60706 1549 aa9.58□□□□□ -0.88
CCDC88A-203ENST00000412148 HRCP23327 699 aa9.54□□□□□ -0.88
CCDC88A-203ENST00000412148 EHMT2Q96KQ7 1210 aa9.51□□□□□ -0.89
CCDC88A-203ENST00000412148 RB1CC1Q8TDY2 1594 aa9.39□□□□□ -0.91
CCDC88A-203ENST00000412148 SLC24A1O60721 1099 aa9.36□□□□□ -0.91
CCDC88A-203ENST00000412148 NACADO15069 1562 aa9.34□□□□□ -0.91
CCDC88A-203ENST00000412148 RSF1Q96T23 1441 aaPredicted RBP9.34□□□□□ -0.91
CCDC88A-203ENST00000412148 SCRIBQ14160 1630 aa9.29□□□□□ -0.92
CCDC88A-203ENST00000412148 PCGF6Q9BYE7 350 aa9.27□□□□□ -0.93
CCDC88A-203ENST00000412148 TRIM26Q12899 539 aaPredicted RBP9.26□□□□□ -0.93
CCDC88A-203ENST00000412148 DCAF8L2P0C7V8 631 aa9.25□□□□□ -0.93
CCDC88A-203ENST00000412148 EIF4G1Q04637 1599 aaKnown RBP9.23□□□□□ -0.93
CCDC88A-203ENST00000412148 ZEB1P37275 1124 aaPredicted RBP9.22□□□□□ -0.93
CCDC88A-203ENST00000412148 BAZ1AQ9NRL2 1556 aaPredicted RBP9.21□□□□□ -0.94
CCDC88A-203ENST00000412148 PLPPR3Q6T4P5 718 aa9.15□□□□□ -0.94
CCDC88A-203ENST00000412148 LOC105371045A0A1W2PR82 267 aa9.15□□□□□ -0.94
CCDC88A-203ENST00000412148 MROH2BQ7Z745 1585 aa9.13□□□□□ -0.95
CCDC88A-203ENST00000412148 WIZO95785 1651 aa9.11□□□□□ -0.95
CCDC88A-203ENST00000412148 TRIM41Q8WV44 630 aa9.08□□□□□ -0.96
CCDC88A-203ENST00000412148 CECR2Q9BXF3 1484 aa9.07□□□□□ -0.96
CCDC88A-203ENST00000412148 PPARGC1BQ86YN6 1023 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-203ENST00000412148 TOP2AP11388 1531 aaKnown RBP9.07□□□□□ -0.96
CCDC88A-203ENST00000412148 UNC13AQ9UPW8 1703 aa9.05□□□□□ -0.96
CCDC88A-203ENST00000412148 SMARCA4P51532 1647 aa9.04□□□□□ -0.96
CCDC88A-203ENST00000412148 WRNQ14191 1432 aaPredicted RBP eCLIP9.04□□□□□ -0.96
CCDC88A-203ENST00000412148 SMARCA2P51531 1590 aa9□□□□□ -0.97
CCDC88A-203ENST00000412148 EEA1Q15075 1411 aa8.99□□□□□ -0.97
CCDC88A-203ENST00000412148 PEG3Q9GZU2 1588 aa8.99□□□□□ -0.97
CCDC88A-203ENST00000412148 PELP1Q8IZL8 1130 aaKnown RBP8.99□□□□□ -0.97
CCDC88A-203ENST00000412148 CCDC88BA6NC98 1476 aa8.91□□□□□ -0.98
CCDC88A-203ENST00000412148 SENP3Q9H4L4 574 aaPredicted RBP8.91□□□□□ -0.98
CCDC88A-203ENST00000412148 TNIKQ9UKE5 1360 aa8.9□□□□□ -0.98
CCDC88A-203ENST00000412148 KIF21BO75037 1637 aa8.89□□□□□ -0.99
CCDC88A-203ENST00000412148 RTN4Q9NQC3 1192 aaKnown RBP8.89□□□□□ -0.99
CCDC88A-203ENST00000412148 ABCC8Q09428 1581 aa8.86□□□□□ -0.99
CCDC88A-203ENST00000412148 CEP162Q5TB80 1403 aa8.84□□□□□ -0.99
CCDC88A-203ENST00000412148 BICRAQ9NZM4 1560 aa8.84□□□□□ -0.99
CCDC88A-203ENST00000412148 KCNA4P22459 653 aa8.84□□□□□ -0.99
CCDC88A-203ENST00000412148 GOLGA3Q08378 1498 aa8.83□□□□□ -1
CCDC88A-203ENST00000412148 BAZ1BQ9UIG0 1483 aaKnown RBP8.82□□□□□ -1
CCDC88A-203ENST00000412148 FAM9AQ8IZU1 332 aaPredicted RBP8.8□□□□□ -1
CCDC88A-203ENST00000412148 CEP164Q9UPV0 1460 aa8.78□□□□□ -1
CCDC88A-203ENST00000412148 SCAF1Q9H7N4 1312 aaKnown RBP8.77□□□□□ -1
CCDC88A-203ENST00000412148 BIVM-ERCC5R4GMW8 1640 aa8.77□□□□□ -1.01
CCDC88A-203ENST00000412148 CSRNP3Q8WYN3 585 aa8.77□□□□□ -1.01
CCDC88A-203ENST00000412148 SOGA1O94964 1423 aa8.76□□□□□ -1.01
CCDC88A-203ENST00000412148 SYNJ1O43426 1573 aa8.76□□□□□ -1.01
CCDC88A-203ENST00000412148 ADRA2BP18089 450 aa8.75□□□□□ -1.01
CCDC88A-203ENST00000412148 TOP2BQ02880 1626 aa8.74□□□□□ -1.01
CCDC88A-203ENST00000412148 ERICH3Q5RHP9 1530 aa8.73□□□□□ -1.01
CCDC88A-203ENST00000412148 ACIN1Q9UKV3 1341 aaKnown RBP8.72□□□□□ -1.01
CCDC88A-203ENST00000412148 CCER1Q8TC90 406 aaPredicted RBP8.71□□□□□ -1.02
CCDC88A-203ENST00000412148 PRDM2Q13029 1718 aa8.71□□□□□ -1.02
CCDC88A-203ENST00000412148 RUSC2Q8N2Y8 1516 aa8.7□□□□□ -1.02
CCDC88A-203ENST00000412148 VPS8Q8N3P4 1428 aa8.7□□□□□ -1.02
CCDC88A-203ENST00000412148 ATAD2BQ9ULI0 1458 aa8.69□□□□□ -1.02
CCDC88A-203ENST00000412148 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-203ENST00000412148 CENPBP07199 599 aaPredicted RBP8.67□□□□□ -1.02
CCDC88A-203ENST00000412148 CLSPNQ9HAW4 1339 aa8.67□□□□□ -1.02
CCDC88A-203ENST00000412148 HMGXB3Q12766 1538 aa8.67□□□□□ -1.02
CCDC88A-203ENST00000412148 DIEXFQ68CQ4 756 aaKnown RBP8.66□□□□□ -1.02
CCDC88A-203ENST00000412148 CLIP1P30622 1438 aa8.65□□□□□ -1.03
CCDC88A-203ENST00000412148 MYT1Q01538 1121 aa8.64□□□□□ -1.03
CCDC88A-203ENST00000412148 ZNF316A6NFI3 1004 aaPredicted RBP8.63□□□□□ -1.03
CCDC88A-203ENST00000412148 CUX2O14529 1486 aa8.63□□□□□ -1.03
CCDC88A-203ENST00000412148 PRXQ9BXM0 1461 aa8.62□□□□□ -1.03
CCDC88A-203ENST00000412148 NEUROD1Q13562 356 aa8.61□□□□□ -1.03
CCDC88A-203ENST00000412148 MAP3K1Q13233 1512 aa8.59□□□□□ -1.03
CCDC88A-203ENST00000412148 RAPGEF2Q9Y4G8 1499 aa8.59□□□□□ -1.03
CCDC88A-203ENST00000412148 PPP6R1Q9UPN7 881 aa8.59□□□□□ -1.04
CCDC88A-203ENST00000412148 NCAPD3P42695 1498 aa8.57□□□□□ -1.04
CCDC88A-203ENST00000412148 UBTFP17480 764 aaKnown RBP8.57□□□□□ -1.04
CCDC88A-203ENST00000412148 RRBP1Q9P2E9 1410 aaKnown RBP8.57□□□□□ -1.04
CCDC88A-203ENST00000412148 ARAP1Q96P48 1450 aa8.56□□□□□ -1.04
CCDC88A-203ENST00000412148 CUX1P39880 1505 aa8.52□□□□□ -1.04
CCDC88A-203ENST00000412148 GTF3C3Q9Y5Q9 886 aa8.52□□□□□ -1.04
CCDC88A-203ENST00000412148 CFTRP13569 1480 aa8.51□□□□□ -1.05
CCDC88A-203ENST00000412148 CFAP43Q8NDM7 1665 aa8.5□□□□□ -1.05
CCDC88A-203ENST00000412148 DHX57Q6P158 1386 aaKnown RBP8.49□□□□□ -1.05
CCDC88A-203ENST00000412148 KIF27Q86VH2 1401 aa8.49□□□□□ -1.05
CCDC88A-203ENST00000412148 PRKCSHP14314 528 aaPredicted RBP8.49□□□□□ -1.05
CCDC88A-203ENST00000412148 TIAM1Q13009 1591 aa8.46□□□□□ -1.05
CCDC88A-203ENST00000412148 APLP2Q06481 763 aa8.46□□□□□ -1.05
CCDC88A-203ENST00000412148 ARHGAP35Q9NRY4 1499 aa8.45□□□□□ -1.06
CCDC88A-203ENST00000412148 MIER1Q8N108 512 aa8.42□□□□□ -1.06
CCDC88A-203ENST00000412148 PABPN1Q86U42 306 aaKnown RBP eCLIP8.41□□□□□ -1.06
CCDC88A-203ENST00000412148 CC2D2AQ9P2K1 1620 aa8.41□□□□□ -1.06
CCDC88A-203ENST00000412148 CCNB3Q8WWL7 1395 aa8.41□□□□□ -1.06
CCDC88A-203ENST00000412148 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.41□□□□□ -1.067e-7■■□□□ 13
CCDC88A-203ENST00000412148 EFCAB5A4FU69 1503 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms