RNA–Protein interactions for RNA: ENST00000605204.1

SRSF4-206, Transcript of serine and arginine rich splicing factor 4, humanhuman

TSL 1 (best)

Gene SRSF4, Length 1,399 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRSF4-206ENST00000605204 NISCHQ9Y2I1 1504 aa46.84■■■■■ 5.09
SRSF4-206ENST00000605204 ABCC9O60706 1549 aa41.92■■■■■ 4.3
SRSF4-206ENST00000605204 CCDC180Q9P1Z9 1646 aa41.87■■■■■ 4.29
SRSF4-206ENST00000605204 RB1CC1Q8TDY2 1594 aa39.81■■■■□ 3.96
SRSF4-206ENST00000605204 NACADO15069 1562 aa39.49■■■■□ 3.91
SRSF4-206ENST00000605204 DNAJC5BQ9UF47 199 aa39.35■■■■□ 3.89
SRSF4-206ENST00000605204 UNC13AQ9UPW8 1703 aa39.13■■■■□ 3.85
SRSF4-206ENST00000605204 MYO15BQ96JP2 1530 aa39.11■■■■□ 3.85
SRSF4-206ENST00000605204 DCAF8L2P0C7V8 631 aa39.05■■■■□ 3.84
SRSF4-206ENST00000605204 ZCCHC6Q5VYS8 1495 aaKnown RBP39.02■■■■□ 3.84
SRSF4-206ENST00000605204 PABPN1Q86U42 306 aaKnown RBP eCLIP38.88■■■■□ 3.81
SRSF4-206ENST00000605204 DCAF1Q9Y4B6 1507 aa38.86■■■■□ 3.81
SRSF4-206ENST00000605204 BICRAQ9NZM4 1560 aa38.79■■■■□ 3.8
SRSF4-206ENST00000605204 SCRIBQ14160 1630 aa38.17■■■■□ 3.7
SRSF4-206ENST00000605204 SHROOM4Q9ULL8 1493 aa38.13■■■■□ 3.69
SRSF4-206ENST00000605204 CC2D2AQ9P2K1 1620 aa37.91■■■■□ 3.66
SRSF4-206ENST00000605204 EIF4G1Q04637 1599 aaKnown RBP37.8■■■■□ 3.64
SRSF4-206ENST00000605204 CECR2Q9BXF3 1484 aa37.74■■■■□ 3.63
SRSF4-206ENST00000605204 NCAPD3P42695 1498 aa36.42■■■■□ 3.42
SRSF4-206ENST00000605204 SMARCA4P51532 1647 aa36.37■■■■□ 3.41
SRSF4-206ENST00000605204 BAZ1AQ9NRL2 1556 aaPredicted RBP36.37■■■■□ 3.41
SRSF4-206ENST00000605204 ATAD2BQ9ULI0 1458 aa36.35■■■■□ 3.41
SRSF4-206ENST00000605204 HMGXB3Q12766 1538 aa36.25■■■■□ 3.39
SRSF4-206ENST00000605204 SMARCA2P51531 1590 aa36.23■■■■□ 3.39
SRSF4-206ENST00000605204 CUX2O14529 1486 aa36.13■■■■□ 3.37
SRSF4-206ENST00000605204 ERCC6Q03468 1493 aa36.13■■■■□ 3.37
SRSF4-206ENST00000605204 DNAJC5Q9H3Z4 198 aa36.12■■■■□ 3.37
SRSF4-206ENST00000605204 PEG3Q9GZU2 1588 aa36.08■■■■□ 3.37
SRSF4-206ENST00000605204 MROH2BQ7Z745 1585 aa36.02■■■■□ 3.36
SRSF4-206ENST00000605204 NESP48681 1621 aa36.02■■■■□ 3.36
SRSF4-206ENST00000605204 BAZ1BQ9UIG0 1483 aaKnown RBP35.99■■■■□ 3.35
SRSF4-206ENST00000605204 THOC2Q8NI27 1593 aaKnown RBP35.78■■■■□ 3.32
SRSF4-206ENST00000605204 LAMC3Q9Y6N6 1575 aa35.69■■■■□ 3.3
SRSF4-206ENST00000605204 KIF21AQ7Z4S6 1674 aa35.64■■■■□ 3.3
SRSF4-206ENST00000605204 RSF1Q96T23 1441 aaPredicted RBP35.62■■■■□ 3.29
SRSF4-206ENST00000605204 WIZO95785 1651 aa35.57■■■■□ 3.29
SRSF4-206ENST00000605204 PDS5BQ9NTI5 1447 aa35.35■■■■□ 3.25
SRSF4-206ENST00000605204 TOP2AP11388 1531 aaKnown RBP35.33■■■■□ 3.25
SRSF4-206ENST00000605204 CADPSQ9ULU8 1353 aa35.26■■■■□ 3.24
SRSF4-206ENST00000605204 MRC2Q9UBG0 1479 aa35.2■■■■□ 3.22
SRSF4-206ENST00000605204 WDR62O43379 1518 aa35.18■■■■□ 3.22
SRSF4-206ENST00000605204 CEP164Q9UPV0 1460 aa35.02■■■■□ 3.2
SRSF4-206ENST00000605204 FANCD2Q9BXW9 1451 aa34.96■■■■□ 3.19
SRSF4-206ENST00000605204 CFTRP13569 1480 aa34.95■■■■□ 3.19
SRSF4-206ENST00000605204 CCDC88BA6NC98 1476 aa34.85■■■■□ 3.17
SRSF4-206ENST00000605204 URB2Q14146 1524 aaKnown RBP34.75■■■■□ 3.15
SRSF4-206ENST00000605204 PRDM2Q13029 1718 aa34.74■■■■□ 3.15
SRSF4-206ENST00000605204 TRIM41Q8WV44 630 aa34.51■■■■□ 3.12
SRSF4-206ENST00000605204 SUPT5HO00267 1087 aaKnown RBP34.5■■■■□ 3.11
SRSF4-206ENST00000605204 ZNF608Q9ULD9 1512 aaPredicted RBP34.34■■■■□ 3.09
SRSF4-206ENST00000605204 TOPBP1Q92547 1522 aa34.31■■■■□ 3.08
SRSF4-206ENST00000605204 IFT140Q96RY7 1462 aa34.28■■■■□ 3.08
SRSF4-206ENST00000605204 ABCC8Q09428 1581 aa34.27■■■■□ 3.08
SRSF4-206ENST00000605204 OSCARQ8IYS5 282 aa34.23■■■■□ 3.07
SRSF4-206ENST00000605204 EIF4G3O43432 1585 aaKnown RBP34.22■■■■□ 3.07
SRSF4-206ENST00000605204 DNMBPQ6XZF7 1577 aa34.2■■■■□ 3.07
SRSF4-206ENST00000605204 RIMBP3CA6NJZ7 1639 aa34.14■■■■□ 3.06
SRSF4-206ENST00000605204 RIMBP3BA6NNM3 1639 aa34.14■■■■□ 3.06
SRSF4-206ENST00000605204 RIMBP3Q9UFD9 1639 aa34.14■■■■□ 3.06
SRSF4-206ENST00000605204 TARBP1Q13395 1621 aaKnown RBP34.09■■■■□ 3.05
SRSF4-206ENST00000605204 CHD1O14646 1710 aa34■■■■□ 3.03
SRSF4-206ENST00000605204 ARHGEF11O15085 1522 aa33.98■■■■□ 3.03
SRSF4-206ENST00000605204 POLA1P09884 1462 aaPredicted RBP33.96■■■■□ 3.03
SRSF4-206ENST00000605204 AQRO60306 1485 aaKnown RBP eCLIP33.91■■■■□ 3.021e-7■■□□□ 13.3
SRSF4-206ENST00000605204 RAD54L2Q9Y4B4 1467 aa33.83■■■■□ 3.01
SRSF4-206ENST00000605204 CUX1P39880 1505 aa33.82■■■■□ 3.01
SRSF4-206ENST00000605204 FGD5Q6ZNL6 1462 aa33.75■■■□□ 2.99
SRSF4-206ENST00000605204 SOGA1O94964 1423 aa33.73■■■□□ 2.99
SRSF4-206ENST00000605204 ARAP1Q96P48 1450 aa33.67■■■□□ 2.98
SRSF4-206ENST00000605204 WDR97A6NE52 1622 aa33.66■■■□□ 2.98
SRSF4-206ENST00000605204 SNAPC4Q5SXM2 1469 aa33.66■■■□□ 2.98
SRSF4-206ENST00000605204 TDRD9Q8NDG6 1382 aaKnown RBP33.65■■■□□ 2.98
SRSF4-206ENST00000605204 WRNQ14191 1432 aaPredicted RBP eCLIP33.63■■■□□ 2.97
SRSF4-206ENST00000605204 CLASP1Q7Z460 1538 aa33.57■■■□□ 2.96
SRSF4-206ENST00000605204 FBLN2P98095 1184 aa33.55■■■□□ 2.96
SRSF4-206ENST00000605204 TOP2BQ02880 1626 aa33.55■■■□□ 2.96
SRSF4-206ENST00000605204 BIVM-ERCC5R4GMW8 1640 aa33.52■■■□□ 2.96
SRSF4-206ENST00000605204 CYB5RLQ6IPT4 315 aa33.5■■■□□ 2.95
SRSF4-206ENST00000605204 PBRM1Q86U86 1689 aa33.5■■■□□ 2.95
SRSF4-206ENST00000605204 MAGI1Q96QZ7 1491 aaPredicted RBP33.49■■■□□ 2.95
SRSF4-206ENST00000605204 ABCA10Q8WWZ4 1543 aa33.48■■■□□ 2.95
SRSF4-206ENST00000605204 SYNJ1O43426 1573 aa33.46■■■□□ 2.95
SRSF4-206ENST00000605204 GRIN2BQ13224 1484 aa33.45■■■□□ 2.95
SRSF4-206ENST00000605204 ABCA5Q8WWZ7 1642 aa33.4■■■□□ 2.94
SRSF4-206ENST00000605204 SYNJ2O15056 1496 aa33.38■■■□□ 2.93
SRSF4-206ENST00000605204 GAPVD1Q14C86 1478 aa33.35■■■□□ 2.93
SRSF4-206ENST00000605204 CHMP7Q8WUX9 453 aaPredicted RBP33.27■■■□□ 2.92
SRSF4-206ENST00000605204 ADAMTS12P58397 1594 aa33.17■■■□□ 2.9
SRSF4-206ENST00000605204 TRHP20396 242 aaPredicted RBP33.13■■■□□ 2.89
SRSF4-206ENST00000605204 ERICH3Q5RHP9 1530 aa33.1■■■□□ 2.89
SRSF4-206ENST00000605204 GRIN2AQ12879 1464 aa33.08■■■□□ 2.89
SRSF4-206ENST00000605204 ERCC6L2Q5T890 1561 aa33.07■■■□□ 2.89
SRSF4-206ENST00000605204 CEP170Q5SW79 1584 aa33.06■■■□□ 2.88
SRSF4-206ENST00000605204 FHAD1B1AJZ9 1412 aa33■■■□□ 2.87
SRSF4-206ENST00000605204 NUP160Q12769 1436 aa32.98■■■□□ 2.87
SRSF4-206ENST00000605204 KIF27Q86VH2 1401 aa32.97■■■□□ 2.87
SRSF4-206ENST00000605204 SHROOM2Q13796 1616 aa32.93■■■□□ 2.86
SRSF4-206ENST00000605204 IGF1RP08069 1367 aa32.78■■■□□ 2.84
SRSF4-206ENST00000605204 CUL7Q14999 1698 aa32.75■■■□□ 2.83
SRSF4-206ENST00000605204 RUSC2Q8N2Y8 1516 aa32.72■■■□□ 2.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms