RNA–Protein interactions for RNA: ENST00000494333.1

RIF1-211, Transcript of replication timing regulatory factor 1, humanhuman

TSL 3

Gene RIF1, Length 743 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-211ENST00000494333 AEBP2Q6ZN18 517 aaPredicted RBP29.25■■■□□ 2.27
RIF1-211ENST00000494333 CHIC1Q5VXU3 224 aa28.65■■■□□ 2.18
RIF1-211ENST00000494333 PHF23Q9BUL5 403 aaPredicted RBP25.24■■□□□ 1.63
RIF1-211ENST00000494333 SENP3Q9H4L4 574 aaPredicted RBP24.75■■□□□ 1.55
RIF1-211ENST00000494333 PLPPR3Q6T4P5 718 aa23.31■■□□□ 1.32
RIF1-211ENST00000494333 FOXD1Q16676 465 aa22.99■■□□□ 1.27
RIF1-211ENST00000494333 PPP6R1Q9UPN7 881 aa22.24■■□□□ 1.15
RIF1-211ENST00000494333 ADRA2BP18089 450 aa22.22■■□□□ 1.15
RIF1-211ENST00000494333 PIAS4Q8N2W9 510 aaPredicted RBP21.69■■□□□ 1.06
RIF1-211ENST00000494333 MSH5O43196 834 aa21.11■□□□□ 0.97
RIF1-211ENST00000494333 PPP4R3CPQ6ZMV5 832 aa20.57■□□□□ 0.88
RIF1-211ENST00000494333 SCAF1Q9H7N4 1312 aaKnown RBP20.28■□□□□ 0.84
RIF1-211ENST00000494333 KCNA4P22459 653 aa20.24■□□□□ 0.83
RIF1-211ENST00000494333 MAPK8IP2Q13387 824 aaPredicted RBP20.14■□□□□ 0.81
RIF1-211ENST00000494333 NCBP3Q53F19 620 aaKnown RBP20.04■□□□□ 0.8
RIF1-211ENST00000494333 CNKSR2Q8WXI2 1034 aa19.96■□□□□ 0.79
RIF1-211ENST00000494333 DMRT2Q9Y5R5 561 aa19.78■□□□□ 0.76
RIF1-211ENST00000494333 NPM3O75607 178 aaKnown RBP19.77■□□□□ 0.76
RIF1-211ENST00000494333 NISCHQ9Y2I1 1504 aa19.71■□□□□ 0.75
RIF1-211ENST00000494333 RNF216Q9NWF9 866 aaPredicted RBP19.53■□□□□ 0.72
RIF1-211ENST00000494333 HOXD11P31277 338 aaPredicted RBP19.43■□□□□ 0.7
RIF1-211ENST00000494333 SLC4A1APQ9BWU0 796 aaKnown RBP19.28■□□□□ 0.68
RIF1-211ENST00000494333 DNAJC5BQ9UF47 199 aa19.16■□□□□ 0.66
RIF1-211ENST00000494333 POTEDQ86YR6 584 aa19.05■□□□□ 0.64
RIF1-211ENST00000494333 DCAF8L1A6NGE4 600 aa18.93■□□□□ 0.62
RIF1-211ENST00000494333 EHMT2Q96KQ7 1210 aa18.88■□□□□ 0.61
RIF1-211ENST00000494333 SLC4A2P04920 1241 aa18.66■□□□□ 0.58
RIF1-211ENST00000494333 ZBTB22O15209 634 aa18.65■□□□□ 0.58
RIF1-211ENST00000494333 CSRNP3Q8WYN3 585 aa18.62■□□□□ 0.57
RIF1-211ENST00000494333 FOXD4L1Q9NU39 408 aa18.57■□□□□ 0.56
RIF1-211ENST00000494333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.51■□□□□ 0.553e-6■□□□□ 8.6
RIF1-211ENST00000494333 MYCNP04198 464 aaPredicted RBP18.25■□□□□ 0.51
RIF1-211ENST00000494333 U3KPZ7 1027 aaPredicted RBP18.25■□□□□ 0.51
RIF1-211ENST00000494333 RNF39Q9H2S5 420 aa18.13■□□□□ 0.49
RIF1-211ENST00000494333 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18■□□□□ 0.47
RIF1-211ENST00000494333 HNRNPUL2Q1KMD3 747 aaKnown RBP18■□□□□ 0.47
RIF1-211ENST00000494333 SAMD1Q6SPF0 538 aaPredicted RBP17.96■□□□□ 0.47
RIF1-211ENST00000494333 ATXN8OSP0DMR3 200 aa17.91■□□□□ 0.46
RIF1-211ENST00000494333 C1QBPQ07021 282 aaKnown RBP17.89■□□□□ 0.45
RIF1-211ENST00000494333 ATF5Q9Y2D1 282 aaPredicted RBP17.81■□□□□ 0.44
RIF1-211ENST00000494333 APLP2Q06481 763 aa17.78■□□□□ 0.44
RIF1-211ENST00000494333 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.43
RIF1-211ENST00000494333 CAPN15O75808 1086 aa17.61■□□□□ 0.41
RIF1-211ENST00000494333 CACNB1Q02641 598 aaPredicted RBP17.57■□□□□ 0.4
RIF1-211ENST00000494333 TRHP20396 242 aaPredicted RBP17.56■□□□□ 0.4
RIF1-211ENST00000494333 ZNF219Q9P2Y4 722 aaPredicted RBP17.54■□□□□ 0.4
RIF1-211ENST00000494333 CCDC180Q9P1Z9 1646 aa17.5■□□□□ 0.39
RIF1-211ENST00000494333 ABCC9O60706 1549 aa17.47■□□□□ 0.39
RIF1-211ENST00000494333 ABCB7O75027 752 aa17.31■□□□□ 0.36
RIF1-211ENST00000494333 POLA2Q14181 598 aa17.31■□□□□ 0.36
RIF1-211ENST00000494333 DSG3P32926 999 aa17.29■□□□□ 0.36
RIF1-211ENST00000494333 MKRN4PQ13434 485 aaPredicted RBP17.02■□□□□ 0.32
RIF1-211ENST00000494333 FBLN2P98095 1184 aa16.99■□□□□ 0.31
RIF1-211ENST00000494333 ZBTB12Q9Y330 459 aaPredicted RBP16.99■□□□□ 0.31
RIF1-211ENST00000494333 FKBP8Q14318 412 aa16.82■□□□□ 0.28
RIF1-211ENST00000494333 DCAF8L2P0C7V8 631 aa16.74■□□□□ 0.27
RIF1-211ENST00000494333 OSCARQ8IYS5 282 aa16.71■□□□□ 0.27
RIF1-211ENST00000494333 SPDYE4A6NLX3 237 aa16.68■□□□□ 0.26
RIF1-211ENST00000494333 RB1CC1Q8TDY2 1594 aa16.64■□□□□ 0.25
RIF1-211ENST00000494333 NACADO15069 1562 aa16.58■□□□□ 0.24
RIF1-211ENST00000494333 SPDYE2BA6NHP3 402 aa16.57■□□□□ 0.24
RIF1-211ENST00000494333 SPDYE6P0CI01 402 aa16.57■□□□□ 0.24
RIF1-211ENST00000494333 SPDYE2Q495Y8 402 aa16.57■□□□□ 0.24
RIF1-211ENST00000494333 ZNF692Q9BU19 519 aaPredicted RBP16.53■□□□□ 0.24
RIF1-211ENST00000494333 SSUH2Q9Y2M2 353 aa16.45■□□□□ 0.22
RIF1-211ENST00000494333 RBM42Q9BTD8 480 aaKnown RBP16.44■□□□□ 0.22
RIF1-211ENST00000494333 PROM2Q8N271 834 aa16.42■□□□□ 0.22
RIF1-211ENST00000494333 MYO15BQ96JP2 1530 aa16.4■□□□□ 0.22
RIF1-211ENST00000494333 PABPN1Q86U42 306 aaKnown RBP eCLIP16.38■□□□□ 0.21
RIF1-211ENST00000494333 ZCCHC6Q5VYS8 1495 aaKnown RBP16.34■□□□□ 0.21
RIF1-211ENST00000494333 AKT1S1Q96B36 256 aa16.28■□□□□ 0.2
RIF1-211ENST00000494333 DCAF1Q9Y4B6 1507 aa16.24■□□□□ 0.19
RIF1-211ENST00000494333 UNC13AQ9UPW8 1703 aa16.16■□□□□ 0.18
RIF1-211ENST00000494333 FBXO3Q9UK99 471 aa16.16■□□□□ 0.18
RIF1-211ENST00000494333 BICRAQ9NZM4 1560 aa16.14■□□□□ 0.17
RIF1-211ENST00000494333 REM2Q8IYK8 340 aaPredicted RBP16.14■□□□□ 0.17
RIF1-211ENST00000494333 STAG3Q9UJ98 1225 aa16.05■□□□□ 0.16
RIF1-211ENST00000494333 SPDYE1Q8NFV5 336 aaPredicted RBP16.03■□□□□ 0.16
RIF1-211ENST00000494333 SCRIBQ14160 1630 aa16.02■□□□□ 0.16
RIF1-211ENST00000494333 CLEC11AQ9Y240 323 aa15.98■□□□□ 0.15
RIF1-211ENST00000494333 PITPNM1O00562 1244 aa15.96■□□□□ 0.15
RIF1-211ENST00000494333 VASPP50552 380 aaPredicted RBP15.96■□□□□ 0.15
RIF1-211ENST00000494333 SHROOM4Q9ULL8 1493 aa15.92■□□□□ 0.14
RIF1-211ENST00000494333 PRR29P0C7W0 189 aa15.85■□□□□ 0.13
RIF1-211ENST00000494333 MIER1Q8N108 512 aa15.8■□□□□ 0.12
RIF1-211ENST00000494333 PLCD3Q8N3E9 789 aa15.79■□□□□ 0.12
RIF1-211ENST00000494333 IFNLR1Q8IU57 520 aaPredicted RBP15.77■□□□□ 0.12
RIF1-211ENST00000494333 EIF4G1Q04637 1599 aaKnown RBP15.75■□□□□ 0.11
RIF1-211ENST00000494333 CC2D2AQ9P2K1 1620 aa15.73■□□□□ 0.11
RIF1-211ENST00000494333 CHRDL2Q6WN34 429 aa15.73■□□□□ 0.11
RIF1-211ENST00000494333 CECR2Q9BXF3 1484 aa15.71■□□□□ 0.11
RIF1-211ENST00000494333 CREBZFQ9NS37 354 aa15.69■□□□□ 0.1
RIF1-211ENST00000494333 PLEKHG5O94827 1062 aa15.68■□□□□ 0.1
RIF1-211ENST00000494333 KLHL34Q8N239 644 aa15.65■□□□□ 0.1
RIF1-211ENST00000494333 FXR2P51116 673 aaKnown RBP eCLIP15.63■□□□□ 0.092e-8■■■■■ 28.1
RIF1-211ENST00000494333 CHADLQ6NUI6 762 aa15.61■□□□□ 0.09
RIF1-211ENST00000494333 PIP4P2Q8N4L2 257 aa15.58■□□□□ 0.08
RIF1-211ENST00000494333 ZBTB47Q9UFB7 747 aaPredicted RBP15.57■□□□□ 0.08
RIF1-211ENST00000494333 PRKAR2AP13861 404 aaKnown RBP15.55■□□□□ 0.08
RIF1-211ENST00000494333 MNX1P50219 401 aaPredicted RBP15.55■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms