RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 AEBP2Q6ZN18 517 aaPredicted RBP7.72□□□□□ -1.17
CCDC88A-208ENST00000444458 CHIC1Q5VXU3 224 aa7.06□□□□□ -1.28
CCDC88A-208ENST00000444458 SENP3Q9H4L4 574 aaPredicted RBP6.41□□□□□ -1.38
CCDC88A-208ENST00000444458 PHF23Q9BUL5 403 aaPredicted RBP6.24□□□□□ -1.41
CCDC88A-208ENST00000444458 POTEDQ86YR6 584 aa6.1□□□□□ -1.43
CCDC88A-208ENST00000444458 FOXD1Q16676 465 aa6.07□□□□□ -1.44
CCDC88A-208ENST00000444458 MSH5O43196 834 aa5.73□□□□□ -1.49
CCDC88A-208ENST00000444458 PPP6R1Q9UPN7 881 aa5.47□□□□□ -1.53
CCDC88A-208ENST00000444458 DNAJC5BQ9UF47 199 aa5.35□□□□□ -1.55
CCDC88A-208ENST00000444458 EHMT2Q96KQ7 1210 aa5.34□□□□□ -1.55
CCDC88A-208ENST00000444458 PLPPR3Q6T4P5 718 aa5.31□□□□□ -1.56
CCDC88A-208ENST00000444458 PIAS4Q8N2W9 510 aaPredicted RBP5.25□□□□□ -1.57
CCDC88A-208ENST00000444458 DMRT2Q9Y5R5 561 aa5.24□□□□□ -1.57
CCDC88A-208ENST00000444458 ADRA2BP18089 450 aa5.21□□□□□ -1.57
CCDC88A-208ENST00000444458 SLC24A1O60721 1099 aa5.15□□□□□ -1.58
CCDC88A-208ENST00000444458 HOXD11P31277 338 aaPredicted RBP5.08□□□□□ -1.6
CCDC88A-208ENST00000444458 RNF39Q9H2S5 420 aa5.03□□□□□ -1.6
CCDC88A-208ENST00000444458 KCNA4P22459 653 aa5.03□□□□□ -1.6
CCDC88A-208ENST00000444458 CSRNP3Q8WYN3 585 aa4.94□□□□□ -1.62
CCDC88A-208ENST00000444458 SLC4A1APQ9BWU0 796 aaKnown RBP4.92□□□□□ -1.62
CCDC88A-208ENST00000444458 CACNB1Q02641 598 aaPredicted RBP4.9□□□□□ -1.62
CCDC88A-208ENST00000444458 MAPK8IP2Q13387 824 aaPredicted RBP4.89□□□□□ -1.63
CCDC88A-208ENST00000444458 AMER1Q5JTC6 1135 aaPredicted RBP4.88□□□□□ -1.63
CCDC88A-208ENST00000444458 RTN4Q9NQC3 1192 aaKnown RBP4.86□□□□□ -1.63
CCDC88A-208ENST00000444458 RNF216Q9NWF9 866 aaPredicted RBP4.83□□□□□ -1.64
CCDC88A-208ENST00000444458 C1QBPQ07021 282 aaKnown RBP4.83□□□□□ -1.64
CCDC88A-208ENST00000444458 SCAF1Q9H7N4 1312 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-208ENST00000444458 NCBP3Q53F19 620 aaKnown RBP4.71□□□□□ -1.66
CCDC88A-208ENST00000444458 CNKSR2Q8WXI2 1034 aa4.67□□□□□ -1.66
CCDC88A-208ENST00000444458 POTEHQ6S545 545 aa4.67□□□□□ -1.66
CCDC88A-208ENST00000444458 PPP4R3CPQ6ZMV5 832 aa4.65□□□□□ -1.66
CCDC88A-208ENST00000444458 ZBTB22O15209 634 aa4.57□□□□□ -1.68
CCDC88A-208ENST00000444458 NPM3O75607 178 aaKnown RBP4.56□□□□□ -1.68
CCDC88A-208ENST00000444458 DSG3P32926 999 aa4.54□□□□□ -1.68
CCDC88A-208ENST00000444458 FKBP8Q14318 412 aa4.54□□□□□ -1.68
CCDC88A-208ENST00000444458 FOXD4L1Q9NU39 408 aa4.52□□□□□ -1.69
CCDC88A-208ENST00000444458 BCANQ96GW7 911 aa4.51□□□□□ -1.69
CCDC88A-208ENST00000444458 PRKCSHP14314 528 aaPredicted RBP4.5□□□□□ -1.69
CCDC88A-208ENST00000444458 HAP1P54257 671 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-208ENST00000444458 U3KPZ7 1027 aaPredicted RBP4.46□□□□□ -1.7
CCDC88A-208ENST00000444458 DCAF8L2P0C7V8 631 aa4.45□□□□□ -1.7
CCDC88A-208ENST00000444458 PLCB2Q00722 1185 aa4.45□□□□□ -1.7
CCDC88A-208ENST00000444458 TAOK2Q9UL54 1235 aa4.44□□□□□ -1.7
CCDC88A-208ENST00000444458 DCAF8L1A6NGE4 600 aa4.44□□□□□ -1.7
CCDC88A-208ENST00000444458 DAXXQ9UER7 740 aaPredicted RBP4.44□□□□□ -1.7
CCDC88A-208ENST00000444458 TPRNQ4KMQ1 711 aa4.42□□□□□ -1.7
CCDC88A-208ENST00000444458 SLC4A2P04920 1241 aa4.38□□□□□ -1.71
CCDC88A-208ENST00000444458 ARXQ96QS3 562 aa4.35□□□□□ -1.71
CCDC88A-208ENST00000444458 VSIG10Q8N0Z9 540 aa4.34□□□□□ -1.71
CCDC88A-208ENST00000444458 TULP1O00294 542 aaPredicted RBP4.34□□□□□ -1.72
CCDC88A-208ENST00000444458 TIMELESSQ9UNS1 1208 aa4.31□□□□□ -1.72
CCDC88A-208ENST00000444458 ERICH6Q7L0X2 663 aa4.3□□□□□ -1.72
CCDC88A-208ENST00000444458 HOMEZQ8IX15 550 aa4.28□□□□□ -1.72
CCDC88A-208ENST00000444458 RANGAP1P46060 587 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-208ENST00000444458 ZBTB4Q9P1Z0 1013 aaPredicted RBP4.28□□□□□ -1.72
CCDC88A-208ENST00000444458 ATXN8OSP0DMR3 200 aa4.27□□□□□ -1.73
CCDC88A-208ENST00000444458 GTF3C3Q9Y5Q9 886 aa4.26□□□□□ -1.73
CCDC88A-208ENST00000444458 FXR2P51116 673 aaKnown RBP eCLIP4.25□□□□□ -1.734e-6■■■■□ 21.6
CCDC88A-208ENST00000444458 FBXO3Q9UK99 471 aa4.25□□□□□ -1.73
CCDC88A-208ENST00000444458 SPINK5Q9NQ38 1064 aaPredicted RBP4.25□□□□□ -1.73
CCDC88A-208ENST00000444458 MYCNP04198 464 aaPredicted RBP4.24□□□□□ -1.73
CCDC88A-208ENST00000444458 CFAP44Q96MT7 982 aa4.24□□□□□ -1.73
CCDC88A-208ENST00000444458 NBR1Q14596 966 aa4.23□□□□□ -1.73
CCDC88A-208ENST00000444458 PAXIP1Q6ZW49 1069 aaPredicted RBP4.22□□□□□ -1.73
CCDC88A-208ENST00000444458 C14orf37Q86TY3 774 aa4.21□□□□□ -1.74
CCDC88A-208ENST00000444458 SP7Q8TDD2 431 aaPredicted RBP4.19□□□□□ -1.74
CCDC88A-208ENST00000444458 FBLN2P98095 1184 aa4.19□□□□□ -1.74
CCDC88A-208ENST00000444458 KDM2AQ9Y2K7 1162 aa4.19□□□□□ -1.74
CCDC88A-208ENST00000444458 BBXQ8WY36 941 aaPredicted RBP4.16□□□□□ -1.74
CCDC88A-208ENST00000444458 VASPP50552 380 aaPredicted RBP4.15□□□□□ -1.75
CCDC88A-208ENST00000444458 TMEM132AQ24JP5 1023 aa4.14□□□□□ -1.75
CCDC88A-208ENST00000444458 PODXL2Q9NZ53 605 aa4.14□□□□□ -1.75
CCDC88A-208ENST00000444458 SPRYD3Q8NCJ5 442 aa4.13□□□□□ -1.75
CCDC88A-208ENST00000444458 ZNF219Q9P2Y4 722 aaPredicted RBP4.12□□□□□ -1.75
CCDC88A-208ENST00000444458 AKT1S1Q96B36 256 aa4.12□□□□□ -1.75
CCDC88A-208ENST00000444458 ILDR1Q86SU0 546 aaPredicted RBP4.11□□□□□ -1.75
CCDC88A-208ENST00000444458 TSHZ2Q9NRE2 1034 aa4.11□□□□□ -1.75
CCDC88A-208ENST00000444458 ECM2O94769 699 aaPredicted RBP4.1□□□□□ -1.75
CCDC88A-208ENST00000444458 GRWD1Q9BQ67 446 aaKnown RBP eCLIP4.1□□□□□ -1.753e-7■■■■□ 20.8
CCDC88A-208ENST00000444458 KLHL34Q8N239 644 aa4.1□□□□□ -1.75
CCDC88A-208ENST00000444458 C19orf67A6NJJ6 358 aa4.1□□□□□ -1.75
CCDC88A-208ENST00000444458 PKD2Q13563 968 aa4.1□□□□□ -1.75
CCDC88A-208ENST00000444458 SPDYE4A6NLX3 237 aa4.09□□□□□ -1.75
CCDC88A-208ENST00000444458 PIP4P2Q8N4L2 257 aa4.09□□□□□ -1.75
CCDC88A-208ENST00000444458 CHRDL2Q6WN34 429 aa4.09□□□□□ -1.76
CCDC88A-208ENST00000444458 IFNLR1Q8IU57 520 aaPredicted RBP4.08□□□□□ -1.76
CCDC88A-208ENST00000444458 SUPT5HO00267 1087 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-208ENST00000444458 RBM42Q9BTD8 480 aaKnown RBP4.06□□□□□ -1.76
CCDC88A-208ENST00000444458 CAPN15O75808 1086 aa4.05□□□□□ -1.76
CCDC88A-208ENST00000444458 NPM1P06748 294 aaKnown RBP eCLIP4.05□□□□□ -1.76
CCDC88A-208ENST00000444458 APLP2Q06481 763 aa4.05□□□□□ -1.76
CCDC88A-208ENST00000444458 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP4.04□□□□□ -1.76
CCDC88A-208ENST00000444458 HNRNPUL2Q1KMD3 747 aaKnown RBP4.04□□□□□ -1.76
CCDC88A-208ENST00000444458 CHGAP10645 457 aaKnown RBP4.03□□□□□ -1.76
CCDC88A-208ENST00000444458 ATF5Q9Y2D1 282 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-208ENST00000444458 SAMD1Q6SPF0 538 aaPredicted RBP4.03□□□□□ -1.76
CCDC88A-208ENST00000444458 EVX2Q03828 476 aa4.03□□□□□ -1.76
CCDC88A-208ENST00000444458 NPM2Q86SE8 214 aaKnown RBP4.02□□□□□ -1.77
CCDC88A-208ENST00000444458 SPOCK2Q92563 424 aa4.02□□□□□ -1.77
CCDC88A-208ENST00000444458 DNAJC5Q9H3Z4 198 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms