RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-210ENST00000541488 AEBP2Q6ZN18 517 aaPredicted RBP29.79■■■□□ 2.36
PRKDC-210ENST00000541488 CHIC1Q5VXU3 224 aa27.77■■■□□ 2.04
PRKDC-210ENST00000541488 SENP3Q9H4L4 574 aaPredicted RBP25.47■■□□□ 1.67
PRKDC-210ENST00000541488 PHF23Q9BUL5 403 aaPredicted RBP25.06■■□□□ 1.6
PRKDC-210ENST00000541488 FOXD1Q16676 465 aa23.87■■□□□ 1.41
PRKDC-210ENST00000541488 POTEDQ86YR6 584 aa23.33■■□□□ 1.33
PRKDC-210ENST00000541488 MSH5O43196 834 aa22.57■■□□□ 1.2
PRKDC-210ENST00000541488 PIAS4Q8N2W9 510 aaPredicted RBP22.12■■□□□ 1.13
PRKDC-210ENST00000541488 PPP6R1Q9UPN7 881 aa21.77■■□□□ 1.08
PRKDC-210ENST00000541488 ADRA2BP18089 450 aa21.65■■□□□ 1.06
PRKDC-210ENST00000541488 PLPPR3Q6T4P5 718 aa21.65■■□□□ 1.06
PRKDC-210ENST00000541488 MAPK8IP2Q13387 824 aaPredicted RBP20.12■□□□□ 0.81
PRKDC-210ENST00000541488 DMRT2Q9Y5R5 561 aa20.09■□□□□ 0.81
PRKDC-210ENST00000541488 CACNB1Q02641 598 aaPredicted RBP19.85■□□□□ 0.77
PRKDC-210ENST00000541488 SCAF1Q9H7N4 1312 aaKnown RBP19.74■□□□□ 0.75
PRKDC-210ENST00000541488 DCAF8L1A6NGE4 600 aa19.34■□□□□ 0.69
PRKDC-210ENST00000541488 RNF39Q9H2S5 420 aa19.22■□□□□ 0.67
PRKDC-210ENST00000541488 HOXD11P31277 338 aaPredicted RBP19.06■□□□□ 0.64
PRKDC-210ENST00000541488 PPP4R3CPQ6ZMV5 832 aa18.91■□□□□ 0.62
PRKDC-210ENST00000541488 C1QBPQ07021 282 aaKnown RBP18.86■□□□□ 0.61
PRKDC-210ENST00000541488 RNF216Q9NWF9 866 aaPredicted RBP18.71■□□□□ 0.59
PRKDC-210ENST00000541488 CNKSR2Q8WXI2 1034 aa18.7■□□□□ 0.58
PRKDC-210ENST00000541488 DNAJC5BQ9UF47 199 aa18.5■□□□□ 0.55
PRKDC-210ENST00000541488 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.56e-10■■□□□ 11.4
PRKDC-210ENST00000541488 POTEHQ6S545 545 aa18.13■□□□□ 0.49
PRKDC-210ENST00000541488 NCBP3Q53F19 620 aaKnown RBP17.92■□□□□ 0.46
PRKDC-210ENST00000541488 DSG3P32926 999 aa17.75■□□□□ 0.43
PRKDC-210ENST00000541488 U3KPZ7 1027 aaPredicted RBP17.73■□□□□ 0.43
PRKDC-210ENST00000541488 SPINK5Q9NQ38 1064 aaPredicted RBP17.71■□□□□ 0.43
PRKDC-210ENST00000541488 NPM3O75607 178 aaKnown RBP17.7■□□□□ 0.42
PRKDC-210ENST00000541488 CAPN15O75808 1086 aa17.69■□□□□ 0.42
PRKDC-210ENST00000541488 ABCB7O75027 752 aa17.25■□□□□ 0.35
PRKDC-210ENST00000541488 TRHP20396 242 aaPredicted RBP17.24■□□□□ 0.35
PRKDC-210ENST00000541488 ZNF219Q9P2Y4 722 aaPredicted RBP17.14■□□□□ 0.33
PRKDC-210ENST00000541488 SLC4A2P04920 1241 aa17.11■□□□□ 0.33
PRKDC-210ENST00000541488 APLP2Q06481 763 aa17.08■□□□□ 0.32
PRKDC-210ENST00000541488 RBM42Q9BTD8 480 aaKnown RBP16.92■□□□□ 0.3
PRKDC-210ENST00000541488 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.9■□□□□ 0.3
PRKDC-210ENST00000541488 HNRNPUL2Q1KMD3 747 aaKnown RBP16.9■□□□□ 0.3
PRKDC-210ENST00000541488 CHRDL2Q6WN34 429 aa16.88■□□□□ 0.29
PRKDC-210ENST00000541488 SAMD1Q6SPF0 538 aaPredicted RBP16.79■□□□□ 0.28
PRKDC-210ENST00000541488 KCNA4P22459 653 aa16.73■□□□□ 0.27
PRKDC-210ENST00000541488 SP7Q8TDD2 431 aaPredicted RBP16.64■□□□□ 0.25
PRKDC-210ENST00000541488 POLA2Q14181 598 aa16.59■□□□□ 0.25
PRKDC-210ENST00000541488 AKT1S1Q96B36 256 aa16.39■□□□□ 0.21
PRKDC-210ENST00000541488 MYCNP04198 464 aaPredicted RBP16.37■□□□□ 0.21
PRKDC-210ENST00000541488 PIP4P2Q8N4L2 257 aa16.34■□□□□ 0.21
PRKDC-210ENST00000541488 REM2Q8IYK8 340 aaPredicted RBP16.26■□□□□ 0.19
PRKDC-210ENST00000541488 HAX1O00165 279 aa16.22■□□□□ 0.19
PRKDC-210ENST00000541488 ZBTB12Q9Y330 459 aaPredicted RBP16.16■□□□□ 0.18
PRKDC-210ENST00000541488 OSCARQ8IYS5 282 aa16.13■□□□□ 0.17
PRKDC-210ENST00000541488 PITPNM1O00562 1244 aa16.12■□□□□ 0.17
PRKDC-210ENST00000541488 ATF5Q9Y2D1 282 aaPredicted RBP16.11■□□□□ 0.17
PRKDC-210ENST00000541488 FXR2P51116 673 aaKnown RBP eCLIP16.1■□□□□ 0.175e-9■■■■■ 29.8
PRKDC-210ENST00000541488 EVX2Q03828 476 aa16■□□□□ 0.15
PRKDC-210ENST00000541488 FOXD4L1Q9NU39 408 aa15.82■□□□□ 0.12
PRKDC-210ENST00000541488 PRKAR2AP13861 404 aaKnown RBP15.68■□□□□ 0.1
PRKDC-210ENST00000541488 SLC4A1APQ9BWU0 796 aaKnown RBP15.63■□□□□ 0.09
PRKDC-210ENST00000541488 SPDYE2BA6NHP3 402 aa15.62■□□□□ 0.09
PRKDC-210ENST00000541488 SPDYE6P0CI01 402 aa15.62■□□□□ 0.09
PRKDC-210ENST00000541488 SPDYE2Q495Y8 402 aa15.62■□□□□ 0.09
PRKDC-210ENST00000541488 C19orf67A6NJJ6 358 aa15.61■□□□□ 0.09
PRKDC-210ENST00000541488 LHX8Q68G74 356 aa15.6■□□□□ 0.09
PRKDC-210ENST00000541488 GABBR2O75899 941 aa15.57■□□□□ 0.08
PRKDC-210ENST00000541488 CLEC11AQ9Y240 323 aa15.57■□□□□ 0.08
PRKDC-210ENST00000541488 SPDYE1Q8NFV5 336 aaPredicted RBP15.53■□□□□ 0.08
PRKDC-210ENST00000541488 FBLN2P98095 1184 aa15.47■□□□□ 0.07
PRKDC-210ENST00000541488 ZBTB22O15209 634 aa15.39■□□□□ 0.05
PRKDC-210ENST00000541488 CHADLQ6NUI6 762 aa15.38■□□□□ 0.05
PRKDC-210ENST00000541488 ATXN8OSP0DMR3 200 aa15.36■□□□□ 0.05
PRKDC-210ENST00000541488 SSUH2Q9Y2M2 353 aa15.35■□□□□ 0.05
PRKDC-210ENST00000541488 ZNF692Q9BU19 519 aaPredicted RBP15.32■□□□□ 0.04
PRKDC-210ENST00000541488 MKRN4PQ13434 485 aaPredicted RBP15.31■□□□□ 0.04
PRKDC-210ENST00000541488 POTEIP0CG38 1075 aa15.26■□□□□ 0.03
PRKDC-210ENST00000541488 PLSCR2Q9NRY7 297 aa15.24■□□□□ 0.03
PRKDC-210ENST00000541488 PRR29P0C7W0 189 aa15.18■□□□□ 0.02
PRKDC-210ENST00000541488 CD44P16070 742 aaKnown RBP15.14■□□□□ 0.01
PRKDC-210ENST00000541488 PABPN1Q86U42 306 aaKnown RBP eCLIP15.09■□□□□ 0.01
PRKDC-210ENST00000541488 FARP1Q9Y4F1 1045 aaPredicted RBP15.03■□□□□ -0
PRKDC-210ENST00000541488 CLCN6P51797 869 aa14.99□□□□□ -0.01
PRKDC-210ENST00000541488 DCBLD2Q96PD2 775 aa14.98□□□□□ -0.01
PRKDC-210ENST00000541488 ZNF579Q8NAF0 562 aaKnown RBP14.86□□□□□ -0.03
PRKDC-210ENST00000541488 EHMT2Q96KQ7 1210 aa14.83□□□□□ -0.04
PRKDC-210ENST00000541488 OTUD5Q96G74 571 aa14.82□□□□□ -0.04
PRKDC-210ENST00000541488 ZRANB1Q9UGI0 708 aa14.81□□□□□ -0.04
PRKDC-210ENST00000541488 GALR2O43603 387 aaPredicted RBP14.76□□□□□ -0.05
PRKDC-210ENST00000541488 POTEMA6NI47 508 aa14.74□□□□□ -0.05
PRKDC-210ENST00000541488 POTEB2H3BUK9 544 aa14.74□□□□□ -0.05
PRKDC-210ENST00000541488 POTEGQ6S5H5 508 aa14.68□□□□□ -0.06
PRKDC-210ENST00000541488 CSRNP3Q8WYN3 585 aa14.67□□□□□ -0.06
PRKDC-210ENST00000541488 CREBZFQ9NS37 354 aa14.66□□□□□ -0.06
PRKDC-210ENST00000541488 PHF12Q96QT6 1004 aa14.57□□□□□ -0.08
PRKDC-210ENST00000541488 PELP1Q8IZL8 1130 aaKnown RBP14.55□□□□□ -0.08
PRKDC-210ENST00000541488 PAK3O75914 559 aaPredicted RBP14.5□□□□□ -0.09
PRKDC-210ENST00000541488 STAG3Q9UJ98 1225 aa14.47□□□□□ -0.09
PRKDC-210ENST00000541488 PCDH10Q9P2E7 1040 aa14.46□□□□□ -0.09
PRKDC-210ENST00000541488 METRNQ9UJH8 293 aa14.43□□□□□ -0.1
PRKDC-210ENST00000541488 POTEJP0CG39 1038 aa14.42□□□□□ -0.1
PRKDC-210ENST00000541488 ASTLQ6HA08 431 aaPredicted RBP14.37□□□□□ -0.11
PRKDC-210ENST00000541488 LCE2DQ5TA82 110 aaPredicted RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms