Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC11.9□□□□□ -0.5
CHKB-CPT1BH3BT56 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC11.9□□□□□ -0.51
CHKB-CPT1BH3BT56 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC11.9□□□□□ -0.51
CHKB-CPT1BH3BT56 MICAL3-206ENST00000441493 9445 ntAPPRIS P1 TSL 5 BASIC11.9□□□□□ -0.51
CHKB-CPT1BH3BT56 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 AL365209.1-201ENST00000624418 6473 ntBASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 STMN4-202ENST00000350889 2288 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 AL031258.1-201ENST00000623562 325 ntBASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC11.89□□□□□ -0.51
CHKB-CPT1BH3BT56 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 FZD10-202ENST00000539839 3282 ntBASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC11.88□□□□□ -0.51
CHKB-CPT1BH3BT56 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 CABP1-202ENST00000316803 1658 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 ANKRD9-205ENST00000560748 1413 ntAPPRIS P1 TSL 2 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 AP000547.3-202ENST00000592107 1019 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC11.87□□□□□ -0.51
CHKB-CPT1BH3BT56 AC135782.1-201ENST00000537498 2154 ntTSL 2 BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC11.86□□□□□ -0.51
CHKB-CPT1BH3BT56 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC11.86□□□□□ -0.51
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms