Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 AF106564.1-201ENST00000607058 2553 ntBASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.86■□□□□ 0.45
TRAV39A0A0B4J263 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
TRAV39A0A0B4J263 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 AC096631.2-201ENST00000436136 790 ntBASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 Z98882.1-201ENST00000622160 2253 ntBASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
TRAV39A0A0B4J263 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV39A0A0B4J263 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.83■□□□□ 0.45
TRAV39A0A0B4J263 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV39A0A0B4J263 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
TRAV39A0A0B4J263 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 PEMT-206ENST00000435340 960 ntTSL 5 BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 AP005435.1-201ENST00000529293 1178 ntBASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 AP004607.7-201ENST00000527152 1677 ntBASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
TRAV39A0A0B4J263 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 AC135279.3-201ENST00000610945 1311 ntBASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 AC008764.7-201ENST00000593779 1081 ntBASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
TRAV39A0A0B4J263 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 PBX2P1-201ENST00000493219 1291 ntBASIC17.81■□□□□ 0.44
TRAV39A0A0B4J263 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms