RNA–Protein interactions for RNA: ENST00000349379.5

SNX3-202, Transcript of sorting nexin 3, humanhuman

TSL 2 BASIC

Gene SNX3, Length 890 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX3-202ENST00000349379 NISCHQ9Y2I1 1504 aa54.05■■■■■ 6.24
SNX3-202ENST00000349379 CCDC180Q9P1Z9 1646 aa48.18■■■■■ 5.3
SNX3-202ENST00000349379 ABCC9O60706 1549 aa46.96■■■■■ 5.11
SNX3-202ENST00000349379 RB1CC1Q8TDY2 1594 aa45.25■■■■■ 4.83
SNX3-202ENST00000349379 NACADO15069 1562 aa45.22■■■■■ 4.83
SNX3-202ENST00000349379 ZCCHC6Q5VYS8 1495 aaKnown RBP45.04■■■■■ 4.8
SNX3-202ENST00000349379 MYO15BQ96JP2 1530 aa44.99■■■■■ 4.79
SNX3-202ENST00000349379 DCAF8L2P0C7V8 631 aa44.89■■■■■ 4.78
SNX3-202ENST00000349379 DCAF1Q9Y4B6 1507 aa44.78■■■■■ 4.76
SNX3-202ENST00000349379 UNC13AQ9UPW8 1703 aa44.39■■■■■ 4.7
SNX3-202ENST00000349379 BICRAQ9NZM4 1560 aa43.95■■■■■ 4.63
SNX3-202ENST00000349379 SCRIBQ14160 1630 aa43.83■■■■■ 4.61
SNX3-202ENST00000349379 PABPN1Q86U42 306 aaKnown RBP eCLIP43.79■■■■■ 4.6
SNX3-202ENST00000349379 SHROOM4Q9ULL8 1493 aa43.47■■■■■ 4.55
SNX3-202ENST00000349379 DNAJC5BQ9UF47 199 aa43.11■■■■■ 4.49
SNX3-202ENST00000349379 EIF4G1Q04637 1599 aaKnown RBP42.73■■■■■ 4.43
SNX3-202ENST00000349379 CC2D2AQ9P2K1 1620 aa42.57■■■■■ 4.4
SNX3-202ENST00000349379 CECR2Q9BXF3 1484 aa42.21■■■■■ 4.35
SNX3-202ENST00000349379 SMARCA4P51532 1647 aa41.98■■■■■ 4.31
SNX3-202ENST00000349379 BAZ1AQ9NRL2 1556 aaPredicted RBP41.89■■■■■ 4.3
SNX3-202ENST00000349379 ATAD2BQ9ULI0 1458 aa41.7■■■■■ 4.27
SNX3-202ENST00000349379 NCAPD3P42695 1498 aa41.69■■■■■ 4.26
SNX3-202ENST00000349379 SMARCA2P51531 1590 aa41.67■■■■■ 4.26
SNX3-202ENST00000349379 MROH2BQ7Z745 1585 aa41.64■■■■■ 4.26
SNX3-202ENST00000349379 PEG3Q9GZU2 1588 aa41.62■■■■■ 4.25
SNX3-202ENST00000349379 HMGXB3Q12766 1538 aa41.54■■■■■ 4.24
SNX3-202ENST00000349379 BAZ1BQ9UIG0 1483 aaKnown RBP41.33■■■■■ 4.21
SNX3-202ENST00000349379 WIZO95785 1651 aa41.23■■■■■ 4.19
SNX3-202ENST00000349379 RSF1Q96T23 1441 aaPredicted RBP41.12■■■■■ 4.17
SNX3-202ENST00000349379 TOP2AP11388 1531 aaKnown RBP40.78■■■■■ 4.12
SNX3-202ENST00000349379 NESP48681 1621 aa40.67■■■■■ 4.1
SNX3-202ENST00000349379 LAMC3Q9Y6N6 1575 aa40.63■■■■■ 4.09
SNX3-202ENST00000349379 ERCC6Q03468 1493 aa40.44■■■■■ 4.06
SNX3-202ENST00000349379 CADPSQ9ULU8 1353 aa40.42■■■■■ 4.06
SNX3-202ENST00000349379 KIF21AQ7Z4S6 1674 aa40.3■■■■■ 4.04
SNX3-202ENST00000349379 PDS5BQ9NTI5 1447 aa40.25■■■■■ 4.03
SNX3-202ENST00000349379 CCDC88BA6NC98 1476 aa40.25■■■■■ 4.03
SNX3-202ENST00000349379 CFTRP13569 1480 aa40.23■■■■■ 4.03
SNX3-202ENST00000349379 THOC2Q8NI27 1593 aaKnown RBP40.16■■■■■ 4.02
SNX3-202ENST00000349379 CUX2O14529 1486 aa40.12■■■■■ 4.01
SNX3-202ENST00000349379 PRDM2Q13029 1718 aa40.11■■■■■ 4.01
SNX3-202ENST00000349379 FANCD2Q9BXW9 1451 aa39.97■■■■□ 3.99
SNX3-202ENST00000349379 CEP164Q9UPV0 1460 aa39.93■■■■□ 3.98
SNX3-202ENST00000349379 SUPT5HO00267 1087 aaKnown RBP39.89■■■■□ 3.98
SNX3-202ENST00000349379 MRC2Q9UBG0 1479 aa39.88■■■■□ 3.98
SNX3-202ENST00000349379 WDR62O43379 1518 aa39.82■■■■□ 3.97
SNX3-202ENST00000349379 URB2Q14146 1524 aaKnown RBP39.61■■■■□ 3.93
SNX3-202ENST00000349379 TOPBP1Q92547 1522 aa39.37■■■■□ 3.89
SNX3-202ENST00000349379 ABCC8Q09428 1581 aa39.35■■■■□ 3.89
SNX3-202ENST00000349379 DNMBPQ6XZF7 1577 aa39.34■■■■□ 3.89
SNX3-202ENST00000349379 DNAJC5Q9H3Z4 198 aa39.25■■■■□ 3.87
SNX3-202ENST00000349379 IFT140Q96RY7 1462 aa39.1■■■■□ 3.85
SNX3-202ENST00000349379 CUX1P39880 1505 aa39.07■■■■□ 3.84
SNX3-202ENST00000349379 POLA1P09884 1462 aaPredicted RBP39.03■■■■□ 3.84
SNX3-202ENST00000349379 TARBP1Q13395 1621 aaKnown RBP39■■■■□ 3.83
SNX3-202ENST00000349379 ZNF608Q9ULD9 1512 aaPredicted RBP38.93■■■■□ 3.82
SNX3-202ENST00000349379 FGD5Q6ZNL6 1462 aa38.92■■■■□ 3.82
SNX3-202ENST00000349379 EIF4G3O43432 1585 aaKnown RBP38.84■■■■□ 3.81
SNX3-202ENST00000349379 RAD54L2Q9Y4B4 1467 aa38.81■■■■□ 3.8
SNX3-202ENST00000349379 BIVM-ERCC5R4GMW8 1640 aa38.81■■■■□ 3.8
SNX3-202ENST00000349379 SOGA1O94964 1423 aa38.8■■■■□ 3.8
SNX3-202ENST00000349379 TOP2BQ02880 1626 aa38.76■■■■□ 3.8
SNX3-202ENST00000349379 WRNQ14191 1432 aaPredicted RBP eCLIP38.76■■■■□ 3.8
SNX3-202ENST00000349379 WDR97A6NE52 1622 aa38.74■■■■□ 3.79
SNX3-202ENST00000349379 SYNJ1O43426 1573 aa38.74■■■■□ 3.79
SNX3-202ENST00000349379 AQRO60306 1485 aaKnown RBP eCLIP38.66■■■■□ 3.78
SNX3-202ENST00000349379 ABCA10Q8WWZ4 1543 aa38.57■■■■□ 3.76
SNX3-202ENST00000349379 TDRD9Q8NDG6 1382 aaKnown RBP38.56■■■■□ 3.76
SNX3-202ENST00000349379 ABCA5Q8WWZ7 1642 aa38.48■■■■□ 3.75
SNX3-202ENST00000349379 PBRM1Q86U86 1689 aa38.43■■■■□ 3.74
SNX3-202ENST00000349379 CHD1O14646 1710 aa38.39■■■■□ 3.74
SNX3-202ENST00000349379 GRIN2BQ13224 1484 aa38.38■■■■□ 3.73
SNX3-202ENST00000349379 GAPVD1Q14C86 1478 aa38.38■■■■□ 3.73
SNX3-202ENST00000349379 SNAPC4Q5SXM2 1469 aa38.34■■■■□ 3.73
SNX3-202ENST00000349379 OSCARQ8IYS5 282 aa38.33■■■■□ 3.73
SNX3-202ENST00000349379 MAGI1Q96QZ7 1491 aaPredicted RBP38.32■■■■□ 3.72
SNX3-202ENST00000349379 SYNJ2O15056 1496 aa38.15■■■■□ 3.7
SNX3-202ENST00000349379 ERICH3Q5RHP9 1530 aa38.12■■■■□ 3.69
SNX3-202ENST00000349379 ADAMTS12P58397 1594 aa38.08■■■■□ 3.69
SNX3-202ENST00000349379 FBLN2P98095 1184 aa38.06■■■■□ 3.68
SNX3-202ENST00000349379 CHMP7Q8WUX9 453 aaPredicted RBP38.01■■■■□ 3.68
SNX3-202ENST00000349379 CLASP1Q7Z460 1538 aa37.95■■■■□ 3.67
SNX3-202ENST00000349379 FHAD1B1AJZ9 1412 aa37.94■■■■□ 3.66
SNX3-202ENST00000349379 KIF27Q86VH2 1401 aa37.94■■■■□ 3.66
SNX3-202ENST00000349379 GRIN2AQ12879 1464 aa37.91■■■■□ 3.66
SNX3-202ENST00000349379 RIMBP3CA6NJZ7 1639 aa37.87■■■■□ 3.65
SNX3-202ENST00000349379 RIMBP3BA6NNM3 1639 aa37.87■■■■□ 3.65
SNX3-202ENST00000349379 RIMBP3Q9UFD9 1639 aa37.87■■■■□ 3.65
SNX3-202ENST00000349379 ARHGEF11O15085 1522 aa37.82■■■■□ 3.65
SNX3-202ENST00000349379 CUL7Q14999 1698 aa37.8■■■■□ 3.64
SNX3-202ENST00000349379 IGF1RP08069 1367 aa37.79■■■■□ 3.64
SNX3-202ENST00000349379 NUP160Q12769 1436 aa37.77■■■■□ 3.64
SNX3-202ENST00000349379 CEP170Q5SW79 1584 aa37.76■■■■□ 3.64
SNX3-202ENST00000349379 TRIM41Q8WV44 630 aa37.7■■■■□ 3.63
SNX3-202ENST00000349379 RUSC2Q8N2Y8 1516 aa37.61■■■■□ 3.61
SNX3-202ENST00000349379 SHROOM2Q13796 1616 aa37.57■■■■□ 3.6
SNX3-202ENST00000349379 CARMIL1Q5VZK9 1371 aa37.55■■■■□ 3.6
SNX3-202ENST00000349379 ARAP1Q96P48 1450 aa37.52■■■■□ 3.6
SNX3-202ENST00000349379 ERCC6L2Q5T890 1561 aa37.39■■■■□ 3.58
SNX3-202ENST00000349379 KIAA0586Q9BVV6 1533 aa37.36■■■■□ 3.57
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms