RNA–Protein interactions for RNA: ENST00000616550.4

CBWD3-212, Transcript of COBW domain containing 3, humanhuman

TSL 2 BASIC

Gene CBWD3, Length 721 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-212ENST00000616550 NISCHQ9Y2I1 1504 aa54.14■■■■■ 6.26
CBWD3-212ENST00000616550 CCDC180Q9P1Z9 1646 aa48.25■■■■■ 5.31
CBWD3-212ENST00000616550 ABCC9O60706 1549 aa47.51■■■■■ 5.2
CBWD3-212ENST00000616550 RB1CC1Q8TDY2 1594 aa45.58■■■■■ 4.89
CBWD3-212ENST00000616550 DCAF8L2P0C7V8 631 aa45.5■■■■■ 4.87
CBWD3-212ENST00000616550 NACADO15069 1562 aa45.45■■■■■ 4.87
CBWD3-212ENST00000616550 MYO15BQ96JP2 1530 aa45.06■■■■■ 4.8
CBWD3-212ENST00000616550 ZCCHC6Q5VYS8 1495 aaKnown RBP45.01■■■■■ 4.8
CBWD3-212ENST00000616550 DCAF1Q9Y4B6 1507 aa44.76■■■■■ 4.76
CBWD3-212ENST00000616550 UNC13AQ9UPW8 1703 aa44.52■■■■■ 4.72
CBWD3-212ENST00000616550 PABPN1Q86U42 306 aaKnown RBP eCLIP44.4■■■■■ 4.7
CBWD3-212ENST00000616550 BICRAQ9NZM4 1560 aa44.16■■■■■ 4.66
CBWD3-212ENST00000616550 SCRIBQ14160 1630 aa44.02■■■■■ 4.64
CBWD3-212ENST00000616550 DNAJC5BQ9UF47 199 aa43.87■■■■■ 4.61
CBWD3-212ENST00000616550 SHROOM4Q9ULL8 1493 aa43.68■■■■■ 4.58
CBWD3-212ENST00000616550 EIF4G1Q04637 1599 aaKnown RBP43.04■■■■■ 4.48
CBWD3-212ENST00000616550 CC2D2AQ9P2K1 1620 aa42.96■■■■■ 4.47
CBWD3-212ENST00000616550 CECR2Q9BXF3 1484 aa42.73■■■■■ 4.43
CBWD3-212ENST00000616550 SMARCA4P51532 1647 aa42.06■■■■■ 4.32
CBWD3-212ENST00000616550 BAZ1AQ9NRL2 1556 aaPredicted RBP41.99■■■■■ 4.31
CBWD3-212ENST00000616550 NCAPD3P42695 1498 aa41.94■■■■■ 4.3
CBWD3-212ENST00000616550 ATAD2BQ9ULI0 1458 aa41.92■■■■■ 4.3
CBWD3-212ENST00000616550 SMARCA2P51531 1590 aa41.87■■■■■ 4.29
CBWD3-212ENST00000616550 MROH2BQ7Z745 1585 aa41.71■■■■■ 4.27
CBWD3-212ENST00000616550 HMGXB3Q12766 1538 aa41.69■■■■■ 4.26
CBWD3-212ENST00000616550 PEG3Q9GZU2 1588 aa41.63■■■■■ 4.26
CBWD3-212ENST00000616550 BAZ1BQ9UIG0 1483 aaKnown RBP41.58■■■■■ 4.25
CBWD3-212ENST00000616550 WIZO95785 1651 aa41.27■■■■■ 4.2
CBWD3-212ENST00000616550 RSF1Q96T23 1441 aaPredicted RBP41.15■■■■■ 4.18
CBWD3-212ENST00000616550 NESP48681 1621 aa41.02■■■■■ 4.16
CBWD3-212ENST00000616550 ERCC6Q03468 1493 aa41.01■■■■■ 4.16
CBWD3-212ENST00000616550 LAMC3Q9Y6N6 1575 aa40.88■■■■■ 4.13
CBWD3-212ENST00000616550 TOP2AP11388 1531 aaKnown RBP40.79■■■■■ 4.12
CBWD3-212ENST00000616550 CADPSQ9ULU8 1353 aa40.73■■■■■ 4.11
CBWD3-212ENST00000616550 PDS5BQ9NTI5 1447 aa40.66■■■■■ 4.1
CBWD3-212ENST00000616550 CUX2O14529 1486 aa40.64■■■■■ 4.1
CBWD3-212ENST00000616550 KIF21AQ7Z4S6 1674 aa40.52■■■■■ 4.08
CBWD3-212ENST00000616550 THOC2Q8NI27 1593 aaKnown RBP40.42■■■■■ 4.06
CBWD3-212ENST00000616550 CFTRP13569 1480 aa40.39■■■■■ 4.06
CBWD3-212ENST00000616550 CCDC88BA6NC98 1476 aa40.34■■■■■ 4.05
CBWD3-212ENST00000616550 FANCD2Q9BXW9 1451 aa40.25■■■■■ 4.03
CBWD3-212ENST00000616550 CEP164Q9UPV0 1460 aa40.23■■■■■ 4.03
CBWD3-212ENST00000616550 MRC2Q9UBG0 1479 aa40.22■■■■■ 4.03
CBWD3-212ENST00000616550 PRDM2Q13029 1718 aa40.08■■■■■ 4.01
CBWD3-212ENST00000616550 WDR62O43379 1518 aa40.06■■■■■ 4
CBWD3-212ENST00000616550 SUPT5HO00267 1087 aaKnown RBP40■■■■□ 3.99
CBWD3-212ENST00000616550 URB2Q14146 1524 aaKnown RBP39.84■■■■□ 3.97
CBWD3-212ENST00000616550 DNAJC5Q9H3Z4 198 aa39.77■■■■□ 3.96
CBWD3-212ENST00000616550 ABCC8Q09428 1581 aa39.58■■■■□ 3.93
CBWD3-212ENST00000616550 TOPBP1Q92547 1522 aa39.56■■■■□ 3.92
CBWD3-212ENST00000616550 DNMBPQ6XZF7 1577 aa39.49■■■■□ 3.91
CBWD3-212ENST00000616550 IFT140Q96RY7 1462 aa39.39■■■■□ 3.9
CBWD3-212ENST00000616550 ZNF608Q9ULD9 1512 aaPredicted RBP39.23■■■■□ 3.87
CBWD3-212ENST00000616550 POLA1P09884 1462 aaPredicted RBP39.2■■■■□ 3.87
CBWD3-212ENST00000616550 CUX1P39880 1505 aa39.15■■■■□ 3.86
CBWD3-212ENST00000616550 TARBP1Q13395 1621 aaKnown RBP39.13■■■■□ 3.85
CBWD3-212ENST00000616550 SOGA1O94964 1423 aa39.09■■■■□ 3.85
CBWD3-212ENST00000616550 FGD5Q6ZNL6 1462 aa39.08■■■■□ 3.85
CBWD3-212ENST00000616550 RAD54L2Q9Y4B4 1467 aa39.05■■■■□ 3.84
CBWD3-212ENST00000616550 EIF4G3O43432 1585 aaKnown RBP39.04■■■■□ 3.84
CBWD3-212ENST00000616550 AQRO60306 1485 aaKnown RBP eCLIP39■■■■□ 3.83
CBWD3-212ENST00000616550 OSCARQ8IYS5 282 aa38.99■■■■□ 3.83
CBWD3-212ENST00000616550 TDRD9Q8NDG6 1382 aaKnown RBP38.89■■■■□ 3.82
CBWD3-212ENST00000616550 WRNQ14191 1432 aaPredicted RBP eCLIP38.83■■■■□ 3.81
CBWD3-212ENST00000616550 WDR97A6NE52 1622 aa38.81■■■■□ 3.8
CBWD3-212ENST00000616550 TOP2BQ02880 1626 aa38.74■■■■□ 3.79
CBWD3-212ENST00000616550 BIVM-ERCC5R4GMW8 1640 aa38.74■■■■□ 3.79
CBWD3-212ENST00000616550 SYNJ1O43426 1573 aa38.71■■■■□ 3.79
CBWD3-212ENST00000616550 ABCA10Q8WWZ4 1543 aa38.68■■■■□ 3.78
CBWD3-212ENST00000616550 FBLN2P98095 1184 aa38.67■■■■□ 3.78
CBWD3-212ENST00000616550 GRIN2BQ13224 1484 aa38.64■■■■□ 3.78
CBWD3-212ENST00000616550 CHD1O14646 1710 aa38.63■■■■□ 3.78
CBWD3-212ENST00000616550 GAPVD1Q14C86 1478 aa38.61■■■■□ 3.77
CBWD3-212ENST00000616550 SNAPC4Q5SXM2 1469 aa38.61■■■■□ 3.77
CBWD3-212ENST00000616550 MAGI1Q96QZ7 1491 aaPredicted RBP38.56■■■■□ 3.76
CBWD3-212ENST00000616550 ABCA5Q8WWZ7 1642 aa38.52■■■■□ 3.76
CBWD3-212ENST00000616550 PBRM1Q86U86 1689 aa38.52■■■■□ 3.76
CBWD3-212ENST00000616550 CHMP7Q8WUX9 453 aaPredicted RBP38.5■■■■□ 3.75
CBWD3-212ENST00000616550 SYNJ2O15056 1496 aa38.41■■■■□ 3.74
CBWD3-212ENST00000616550 TRIM41Q8WV44 630 aa38.38■■■■□ 3.73
CBWD3-212ENST00000616550 RIMBP3CA6NJZ7 1639 aa38.3■■■■□ 3.72
CBWD3-212ENST00000616550 RIMBP3BA6NNM3 1639 aa38.3■■■■□ 3.72
CBWD3-212ENST00000616550 RIMBP3Q9UFD9 1639 aa38.3■■■■□ 3.72
CBWD3-212ENST00000616550 ARHGEF11O15085 1522 aa38.27■■■■□ 3.72
CBWD3-212ENST00000616550 ERICH3Q5RHP9 1530 aa38.22■■■■□ 3.71
CBWD3-212ENST00000616550 ADAMTS12P58397 1594 aa38.18■■■■□ 3.7
CBWD3-212ENST00000616550 CLASP1Q7Z460 1538 aa38.17■■■■□ 3.7
CBWD3-212ENST00000616550 FHAD1B1AJZ9 1412 aa38.15■■■■□ 3.7
CBWD3-212ENST00000616550 GRIN2AQ12879 1464 aa38.12■■■■□ 3.69
CBWD3-212ENST00000616550 KIF27Q86VH2 1401 aa38.05■■■■□ 3.68
CBWD3-212ENST00000616550 CYB5RLQ6IPT4 315 aa38.02■■■■□ 3.68
CBWD3-212ENST00000616550 NUP160Q12769 1436 aa37.95■■■■□ 3.67
CBWD3-212ENST00000616550 ARAP1Q96P48 1450 aa37.93■■■■□ 3.66
CBWD3-212ENST00000616550 CEP170Q5SW79 1584 aa37.93■■■■□ 3.66
CBWD3-212ENST00000616550 IGF1RP08069 1367 aa37.93■■■■□ 3.66
CBWD3-212ENST00000616550 CUL7Q14999 1698 aa37.82■■■■□ 3.65
CBWD3-212ENST00000616550 CARMIL1Q5VZK9 1371 aa37.72■■■■□ 3.63
CBWD3-212ENST00000616550 SHROOM2Q13796 1616 aa37.69■■■■□ 3.62
CBWD3-212ENST00000616550 JPH4Q96JJ6 628 aa37.65■■■■□ 3.62
CBWD3-212ENST00000616550 ERCC6L2Q5T890 1561 aa37.63■■■■□ 3.62
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms