Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 FDPS-207ENST00000468479 938 ntTSL 214.01□□□□□ -0.171e-6■■■■■ 29.6
SF3B1O75533 FDPS-206ENST00000467076 1178 ntAPPRIS ALT1 TSL 3 BASIC13.76□□□□□ -0.211e-6■■■■■ 29.6
SF3B1O75533 FDPS-220ENST00000611010 1196 ntTSL 5 BASIC13.08□□□□□ -0.321e-6■■■■■ 29.6
SF3B1O75533 MBNL1-209ENST00000460591 898 ntTSL 39.83□□□□□ -0.843e-6■■■■■ 29.6
SF3B1O75533 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.17e-7■■■■■ 29.5
SF3B1O75533 PHF23-208ENST00000574236 583 ntTSL 325.51■■□□□ 1.677e-7■■■■■ 29.5
SF3B1O75533 PHF23-211ENST00000574899 370 ntTSL 325.51■■□□□ 1.677e-7■■■■■ 29.5
SF3B1O75533 ERI1-205ENST00000520684 828 ntTSL 525.4■■□□□ 1.667e-7■■■■■ 29.5
SF3B1O75533 PHF23-210ENST00000574407 497 ntTSL 222.97■■□□□ 1.277e-7■■■■■ 29.5
SF3B1O75533 ARHGEF18-205ENST00000599752 582 ntTSL 321.91■■□□□ 1.17e-7■■■■■ 29.5
SF3B1O75533 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.057e-7■■■■■ 29.5
SF3B1O75533 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 17e-7■■■■■ 29.5
SF3B1O75533 PHF23-207ENST00000573826 685 ntTSL 321.27■□□□□ 0.997e-7■■■■■ 29.5
SF3B1O75533 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC20.81■□□□□ 0.927e-7■■■■■ 29.5
SF3B1O75533 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.6■□□□□ 0.897e-7■■■■■ 29.5
SF3B1O75533 KRT18-206ENST00000549078 2088 ntTSL 520.52■□□□□ 0.887e-7■■■■■ 29.5
SF3B1O75533 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC20.32■□□□□ 0.847e-7■■■■■ 29.5
SF3B1O75533 PHF23-206ENST00000572789 1006 ntTSL 220.08■□□□□ 0.817e-7■■■■■ 29.5
SF3B1O75533 MED15-221ENST00000473028 556 ntTSL 419.3■□□□□ 0.687e-7■■■■■ 29.5
SF3B1O75533 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.677e-7■■■■■ 29.5
SF3B1O75533 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.637e-7■■■■■ 29.5
SF3B1O75533 MED15-208ENST00000424287 589 ntTSL 417.91■□□□□ 0.467e-7■■■■■ 29.5
SF3B1O75533 ARHGEF18-201ENST00000319670 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.447e-7■■■■■ 29.5
SF3B1O75533 MED15-219ENST00000457322 623 ntTSL 417.62■□□□□ 0.417e-7■■■■■ 29.5
SF3B1O75533 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC17.5■□□□□ 0.397e-7■■■■■ 29.5
SF3B1O75533 GGA1-211ENST00000431745 483 ntTSL 517.22■□□□□ 0.357e-7■■■■■ 29.5
SF3B1O75533 GGA1-213ENST00000447515 577 ntTSL 416.4■□□□□ 0.227e-7■■■■■ 29.5
SF3B1O75533 CAPN2-212ENST00000498027 1405 ntTSL 216.27■□□□□ 0.27e-7■■■■■ 29.5
SF3B1O75533 POLR2A-207ENST00000576718 548 ntTSL 215.77■□□□□ 0.127e-7■■■■■ 29.5
SF3B1O75533 PHF23-209ENST00000574323 575 ntTSL 415.53■□□□□ 0.087e-7■■■■■ 29.5
SF3B1O75533 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.077e-7■■■■■ 29.5
SF3B1O75533 HAUS5-208ENST00000590994 883 ntTSL 515.31■□□□□ 0.047e-7■■■■■ 29.5
SF3B1O75533 GGA1-220ENST00000484804 449 ntTSL 315.3■□□□□ 0.047e-7■■■■■ 29.5
SF3B1O75533 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.037e-7■■■■■ 29.5
SF3B1O75533 KPNB1-212ENST00000582126 653 ntTSL 515.21■□□□□ 0.037e-7■■■■■ 29.5
SF3B1O75533 TRIM28-211ENST00000597968 504 ntTSL 215.05■□□□□ -07e-7■■■■■ 29.5
SF3B1O75533 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC14.83□□□□□ -0.047e-7■■■■■ 29.5
SF3B1O75533 NUMA1-229ENST00000545721 2796 ntTSL 514.29□□□□□ -0.127e-7■■■■■ 29.5
SF3B1O75533 HIGD1A-205ENST00000470543 983 ntTSL 213.93□□□□□ -0.187e-7■■■■■ 29.5
SF3B1O75533 ZNF169-205ENST00000492115 396 ntTSL 213.58□□□□□ -0.247e-7■■■■■ 29.5
SF3B1O75533 ERI1-201ENST00000250263 4615 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.377e-7■■■■■ 29.5
SF3B1O75533 ERI1-209ENST00000523898 5036 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.377e-7■■■■■ 29.5
SF3B1O75533 ZNF169-204ENST00000481550 1696 ntTSL 1 (best) BASIC12.41□□□□□ -0.427e-7■■■■■ 29.5
SF3B1O75533 ZNF169-202ENST00000395395 1986 ntAPPRIS P1 TSL 2 BASIC12.19□□□□□ -0.467e-7■■■■■ 29.5
SF3B1O75533 GGA1-222ENST00000489772 1384 ntTSL 212.11□□□□□ -0.477e-7■■■■■ 29.5
SF3B1O75533 KRT18-204ENST00000548015 928 ntTSL 212.1□□□□□ -0.477e-7■■■■■ 29.5
SF3B1O75533 NUP93-205ENST00000563437 762 ntTSL 211.92□□□□□ -0.57e-7■■■■■ 29.5
SF3B1O75533 LINC01287-202ENST00000453187 430 ntTSL 311.66□□□□□ -0.547e-7■■■■■ 29.5
SF3B1O75533 HNRNPU-227ENST00000640264 328 ntTSL 311.6□□□□□ -0.551e-7■■■■■ 29.5
SF3B1O75533 NUMA1-220ENST00000541584 3557 ntAPPRIS ALT2 TSL 1 (best)11.24□□□□□ -0.617e-7■■■■■ 29.5
SF3B1O75533 FAM118A-215ENST00000487732 677 ntTSL 310.42□□□□□ -0.747e-7■■■■■ 29.5
SF3B1O75533 ZNF169-201ENST00000340911 2336 ntTSL 2 BASIC9.98□□□□□ -0.817e-7■■■■■ 29.5
SF3B1O75533 SF3B2-210ENST00000530981 1080 ntTSL 59.93□□□□□ -0.827e-7■■■■■ 29.5
SF3B1O75533 MED15-209ENST00000428629 572 ntTSL 49.58□□□□□ -0.887e-7■■■■■ 29.5
SF3B1O75533 CEP95-216ENST00000582724 516 ntAPPRIS ALT2 TSL 39.08□□□□□ -0.967e-7■■■■■ 29.5
SF3B1O75533 ERI1-202ENST00000518663 698 ntTSL 58.91□□□□□ -0.987e-7■■■■■ 29.5
SF3B1O75533 ZNF169-203ENST00000480716 2716 ntTSL 1 (best) BASIC8.81□□□□□ -17e-7■■■■■ 29.5
SF3B1O75533 GGA1-221ENST00000488672 547 ntTSL 58.54□□□□□ -1.047e-7■■■■■ 29.5
SF3B1O75533 GGA1-205ENST00000405147 575 ntTSL 4 BASIC7.38□□□□□ -1.237e-7■■■■■ 29.5
SF3B1O75533 CAPN2-209ENST00000487223 2991 ntTSL 26.75□□□□□ -1.337e-7■■■■■ 29.5
SF3B1O75533 HNRNPU-208ENST00000475997 5290 ntTSL 56.3□□□□□ -1.41e-7■■■■■ 29.5
SF3B1O75533 AC099329.1-201ENST00000625589 539 ntTSL 55.99□□□□□ -1.457e-7■■■■■ 29.5
SF3B1O75533 RNPEP-204ENST00000449524 505 ntTSL 35.48□□□□□ -1.537e-7■■■■■ 29.5
SF3B1O75533 AP005119.2-201ENST00000579735 1105 ntBASIC5.06□□□□□ -1.67e-7■■■■■ 29.5
SF3B1O75533 CAPN2-206ENST00000474026 4130 ntTSL 24.94□□□□□ -1.627e-7■■■■■ 29.5
SF3B1O75533 BLM-202ENST00000558599 577 ntTSL 33.76□□□□□ -1.817e-7■■■■■ 29.5
SF3B1O75533 EIF3M-204ENST00000525054 592 ntTSL 23.64□□□□□ -1.837e-7■■■■■ 29.5
SF3B1O75533 EIF3M-206ENST00000526267 662 ntTSL 23.64□□□□□ -1.837e-7■■■■■ 29.5
SF3B1O75533 CAPN2-205ENST00000472601 625 ntTSL 33.59□□□□□ -1.837e-7■■■■■ 29.5
SF3B1O75533 ERI1-204ENST00000520332 750 ntTSL 32.54□□□□□ -27e-7■■■■■ 29.5
SF3B1O75533 BIRC6-203ENST00000444173 575 ntTSL 42.1□□□□□ -2.077e-7■■■■■ 29.5
SF3B1O75533 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC17.98■□□□□ 0.473e-6■■■■■ 29.5
SF3B1O75533 STX2-203ENST00000392373 2151 ntAPPRIS P4 TSL 5 BASIC9.25□□□□□ -0.933e-6■■■■■ 29.5
SF3B1O75533 STX2-202ENST00000344271 661 ntTSL 33.74□□□□□ -1.813e-6■■■■■ 29.5
SF3B1O75533 MED15-210ENST00000432052 598 ntTSL 423.07■■□□□ 1.282e-7■■■■■ 29.5
SF3B1O75533 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.613e-6■■■■■ 29.5
SF3B1O75533 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC12.34□□□□□ -0.433e-6■■■■■ 29.5
SF3B1O75533 ZEB2-230ENST00000629955 1435 ntTSL 515.05■□□□□ -02e-6■■■■■ 29.5
SF3B1O75533 ZEB2-214ENST00000462355 656 ntTSL 4 BASIC12.29□□□□□ -0.442e-6■■■■■ 29.5
SF3B1O75533 ZEB2-217ENST00000470879 2648 ntTSL 1 (best) BASIC10.72□□□□□ -0.692e-6■■■■■ 29.5
SF3B1O75533 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.013e-6■■■■■ 29.5
SF3B1O75533 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.983e-6■■■■■ 29.5
SF3B1O75533 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.983e-6■■■■■ 29.5
SF3B1O75533 CIZ1-218ENST00000476727 1205 ntTSL 519.51■□□□□ 0.713e-6■■■■■ 29.5
SF3B1O75533 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.63e-6■■■■■ 29.5
SF3B1O75533 CIZ1-225ENST00000538431 2996 ntAPPRIS ALT2 TSL 2 BASIC12.03□□□□□ -0.483e-6■■■■■ 29.5
SF3B1O75533 MED15-225ENST00000477824 571 ntTSL 522.79■■□□□ 1.242e-9■■■■■ 29.5
SF3B1O75533 MED15-215ENST00000444094 551 ntTSL 421.63■■□□□ 1.052e-9■■■■■ 29.5
SF3B1O75533 MED15-205ENST00000414658 717 ntTSL 320.39■□□□□ 0.852e-9■■■■■ 29.5
SF3B1O75533 MED15-227ENST00000486656 577 ntTSL 420.39■□□□□ 0.852e-9■■■■■ 29.5
SF3B1O75533 MED15-214ENST00000441501 840 ntTSL 318.57■□□□□ 0.562e-9■■■■■ 29.5
SF3B1O75533 MED15-213ENST00000438962 573 ntTSL 414.66□□□□□ -0.062e-9■■■■■ 29.5
SF3B1O75533 SPAG5-212ENST00000580682 635 ntTSL 310.06□□□□□ -0.82e-6■■■■■ 29.5
SF3B1O75533 SPAG5-204ENST00000577259 651 ntTSL 36.79□□□□□ -1.322e-6■■■■■ 29.5
SF3B1O75533 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.74□□□□□ -1.493e-6■■■■■ 29.5
SF3B1O75533 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.86□□□□□ -1.793e-6■■■■■ 29.5
SF3B1O75533 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.74□□□□□ -1.813e-6■■■■■ 29.5
SF3B1O75533 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.74□□□□□ -1.813e-6■■■■■ 29.5
SF3B1O75533 ATF2-207ENST00000409833 1335 ntTSL 1 (best) BASIC11.37□□□□□ -0.591e-6■■■■■ 29.4
SF3B1O75533 ATF2-210ENST00000417080 2113 ntTSL 1 (best)11.33□□□□□ -0.61e-6■■■■■ 29.4
Retrieved 100 of 46,956 protein–RNA pairs in 3544.1 ms