Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 CSNK1A1-211ENST00000606826 800 ntTSL 55.47□□□□□ -1.534e-6■■■■■ 38.3
SF3B1O75533 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.21■□□□□ 0.831e-6■■■■■ 38.2
SF3B1O75533 NMU-202ENST00000505262 693 ntTSL 3 BASIC18.76■□□□□ 0.591e-6■■■■■ 38.2
SF3B1O75533 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.26■□□□□ 0.511e-6■■■■■ 38.2
SF3B1O75533 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.361e-6■■■■■ 38.2
SF3B1O75533 NMU-206ENST00000515325 616 ntTSL 34.63□□□□□ -1.671e-6■■■■■ 38.2
SF3B1O75533 NSD2-204ENST00000382891 7534 ntAPPRIS P1 TSL 5 BASIC13.6□□□□□ -0.231e-6■■■■■ 38.2
SF3B1O75533 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.33e-7■■■■■ 38.2
SF3B1O75533 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.341e-6■■■■■ 38.2
SF3B1O75533 NSD2-223ENST00000513726 648 ntTSL 312.33□□□□□ -0.441e-6■■■■■ 38.2
SF3B1O75533 NSD2-205ENST00000382892 7706 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.511e-6■■■■■ 38.2
SF3B1O75533 NSD2-202ENST00000353275 7980 ntTSL 1 (best)11.23□□□□□ -0.611e-6■■■■■ 38.2
SF3B1O75533 NSD2-212ENST00000503128 8568 ntTSL 1 (best) BASIC10.86□□□□□ -0.671e-6■■■■■ 38.2
SF3B1O75533 NSD2-201ENST00000312087 8050 ntTSL 1 (best)10.38□□□□□ -0.751e-6■■■■■ 38.2
SF3B1O75533 NSD2-207ENST00000398261 8390 ntTSL 1 (best) BASIC9.67□□□□□ -0.861e-6■■■■■ 38.2
SF3B1O75533 NSD2-221ENST00000511904 690 ntTSL 58.61□□□□□ -1.031e-6■■■■■ 38.2
SF3B1O75533 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC8.23□□□□□ -1.091e-6■■■■■ 38.2
SF3B1O75533 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.83□□□□□ -0.044e-6■■■■■ 38.2
SF3B1O75533 DAZAP1-206ENST00000587833 560 ntTSL 511.27□□□□□ -0.613e-7■■■■■ 38.2
SF3B1O75533 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.493e-6■■■■■ 38.2
SF3B1O75533 CCNC-219ENST00000627680 896 ntTSL 5 BASIC19.49■□□□□ 0.712e-6■■■■■ 38.2
SF3B1O75533 CCNC-214ENST00000523639 815 ntTSL 218.9■□□□□ 0.622e-6■■■■■ 38.2
SF3B1O75533 CDK16-219ENST00000523034 454 ntTSL 316.43■□□□□ 0.226e-11■■■■■ 38.2
SF3B1O75533 SEC61A1-207ENST00000498837 555 ntTSL 216.25■□□□□ 0.196e-11■■■■■ 38.2
SF3B1O75533 CCNC-202ENST00000369217 674 ntTSL 514.59□□□□□ -0.072e-6■■■■■ 38.2
SF3B1O75533 SEC61A1-205ENST00000483956 3046 ntTSL 1 (best)11.93□□□□□ -0.56e-11■■■■■ 38.2
SF3B1O75533 CCNC-211ENST00000521017 579 ntTSL 411.57□□□□□ -0.562e-6■■■■■ 38.2
SF3B1O75533 XIST-211ENST00000635841 1734 ntTSL 5 BASIC9.38□□□□□ -0.912e-6■■■■■ 38.2
SF3B1O75533 DNMT1-224ENST00000591764 341 ntTSL 1 (best)9.12□□□□□ -0.956e-11■■■■■ 38.2
SF3B1O75533 DNMT1-219ENST00000589349 603 ntTSL 48.97□□□□□ -0.976e-11■■■■■ 38.2
SF3B1O75533 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.78□□□□□ -1.482e-6■■■■■ 38.2
SF3B1O75533 MDM2-216ENST00000471946 251 ntTSL 32.49□□□□□ -2.016e-11■■■■■ 38.2
SF3B1O75533 IARS-205ENST00000443024 4341 ntTSL 5 BASIC7.77□□□□□ -1.172e-6■■■■■ 38.2
SF3B1O75533 IARS-206ENST00000447699 4186 ntTSL 1 (best) BASIC7.56□□□□□ -1.22e-6■■■■■ 38.2
SF3B1O75533 IARS-213ENST00000627121 4587 ntTSL 5 BASIC6.96□□□□□ -1.32e-6■■■■■ 38.2
SF3B1O75533 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.89□□□□□ -1.312e-6■■■■■ 38.2
SF3B1O75533 PDE8A-213ENST00000560789 4664 ntTSL 25.94□□□□□ -1.463e-6■■■■■ 38.1
SF3B1O75533 PDE8A-206ENST00000557819 575 ntTSL 43.28□□□□□ -1.883e-6■■■■■ 38.1
SF3B1O75533 BRD8-209ENST00000430331 432 ntTSL 513.63□□□□□ -0.235e-6■■■■■ 38.1
SF3B1O75533 BRD8-212ENST00000450756 590 ntTSL 49.16□□□□□ -0.945e-6■■■■■ 38.1
SF3B1O75533 BRD8-210ENST00000432618 956 ntTSL 46.25□□□□□ -1.415e-6■■■■■ 38.1
SF3B1O75533 BRD8-208ENST00000428808 754 ntTSL 45.62□□□□□ -1.515e-6■■■■■ 38.1
SF3B1O75533 BRD8-206ENST00000425764 546 ntTSL 45.22□□□□□ -1.575e-6■■■■■ 38.1
SF3B1O75533 BRD8-226ENST00000515254 557 ntTSL 25.22□□□□□ -1.575e-6■■■■■ 38.1
SF3B1O75533 STAM-201ENST00000377500 729 ntTSL 515.51■□□□□ 0.074e-7■■■■■ 38.1
SF3B1O75533 STAM-203ENST00000445846 740 ntTSL 413.13□□□□□ -0.314e-7■■■■■ 38.1
SF3B1O75533 DLG1-221ENST00000469371 4046 ntTSL 27.91□□□□□ -1.146e-6■■■■■ 38.1
SF3B1O75533 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.112e-6■■■■■ 38
SF3B1O75533 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.177e-7■■■■■ 38
SF3B1O75533 PCBP2-215ENST00000549863 1619 ntTSL 5 BASIC15.5■□□□□ 0.077e-7■■■■■ 38
SF3B1O75533 PCBP2-201ENST00000359282 1730 ntTSL 1 (best) BASIC13.18□□□□□ -0.37e-7■■■■■ 38
SF3B1O75533 PCBP2-208ENST00000546652 823 ntTSL 512.6□□□□□ -0.397e-7■■■■■ 38
SF3B1O75533 PCBP2-204ENST00000439930 1296 ntAPPRIS ALT1 TSL 1 (best) BASIC11.87□□□□□ -0.517e-7■■■■■ 38
SF3B1O75533 PCBP2-226ENST00000562264 1145 ntTSL 511.87□□□□□ -0.517e-7■■■■■ 38
SF3B1O75533 PCBP2-203ENST00000437231 3026 ntAPPRIS ALT1 TSL 5 BASIC11.14□□□□□ -0.637e-7■■■■■ 38
SF3B1O75533 PCBP2-223ENST00000552819 1418 ntAPPRIS ALT1 TSL 2 BASIC10.87□□□□□ -0.677e-7■■■■■ 38
SF3B1O75533 PCBP2-205ENST00000447282 3077 ntTSL 5 BASIC10.85□□□□□ -0.677e-7■■■■■ 38
SF3B1O75533 PCBP2-207ENST00000546463 1457 ntAPPRIS P3 TSL 1 (best) BASIC10.51□□□□□ -0.737e-7■■■■■ 38
SF3B1O75533 PCBP2-222ENST00000552296 1342 ntAPPRIS ALT1 TSL 5 BASIC9.87□□□□□ -0.837e-7■■■■■ 38
SF3B1O75533 PCBP2-206ENST00000455667 2741 ntAPPRIS ALT1 TSL 1 (best) BASIC9.86□□□□□ -0.837e-7■■■■■ 38
SF3B1O75533 PCBP2-213ENST00000548933 1202 ntTSL 1 (best) BASIC9.72□□□□□ -0.857e-7■■■■■ 38
SF3B1O75533 FAM192A-220ENST00000569266 981 ntAPPRIS P1 TSL 1 (best) BASIC11.78□□□□□ -0.529e-7■■■■■ 38
SF3B1O75533 COPG1-210ENST00000515725 3231 ntTSL 29.49□□□□□ -0.891e-6■■■■■ 38
SF3B1O75533 COPG1-201ENST00000314797 3078 ntAPPRIS P1 TSL 1 (best) BASIC8.8□□□□□ -11e-6■■■■■ 38
SF3B1O75533 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.235e-6■■■■■ 38
SF3B1O75533 RCL1-206ENST00000442869 1644 ntTSL 3 BASIC13.76□□□□□ -0.215e-6■■■■■ 38
SF3B1O75533 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC18.74■□□□□ 0.592e-6■■■■■ 38
SF3B1O75533 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.22e-6■■■■■ 38
SF3B1O75533 UBE2I-216ENST00000567383 538 ntTSL 418.76■□□□□ 0.595e-6■■■■■ 37.9
SF3B1O75533 ATP8B2-203ENST00000368490 473 ntTSL 325.35■■□□□ 1.653e-7■■■■■ 37.9
SF3B1O75533 SKIV2L-207ENST00000471818 706 ntTSL 517.63■□□□□ 0.412e-12■■■■■ 37.9
SF3B1O75533 SKIV2L-209ENST00000483553 1307 ntTSL 517.16■□□□□ 0.342e-12■■■■■ 37.9
SF3B1O75533 SKIV2L-213ENST00000491994 866 ntTSL 216.8■□□□□ 0.282e-12■■■■■ 37.9
SF3B1O75533 SCART1-203ENST00000475114 946 ntTSL 216.75■□□□□ 0.272e-6■■■■■ 37.9
SF3B1O75533 SKIV2L-206ENST00000470453 455 ntTSL 315.93■□□□□ 0.142e-12■■■■■ 37.9
SF3B1O75533 GMCL1-201ENST00000282570 4191 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.123e-7■■■■■ 37.9
SF3B1O75533 RFC4-214ENST00000494047 1393 ntTSL 211.94□□□□□ -0.52e-6■■■■■ 37.9
SF3B1O75533 RFC4-210ENST00000449502 799 ntTSL 310.23□□□□□ -0.772e-6■■■■■ 37.9
SF3B1O75533 HDGFL3-206ENST00000568294 3397 ntTSL 49.13□□□□□ -0.953e-7■■■■■ 37.9
SF3B1O75533 MBNL1-214ENST00000466565 1096 ntTSL 1 (best)7.25□□□□□ -1.253e-7■■■■■ 37.9
SF3B1O75533 RFC4-205ENST00000418288 701 ntTSL 24.14□□□□□ -1.752e-6■■■■■ 37.9
SF3B1O75533 RFC4-211ENST00000460408 628 ntTSL 22.49□□□□□ -2.012e-6■■■■■ 37.9
SF3B1O75533 TTC17-214ENST00000534347 889 ntTSL 317.64■□□□□ 0.412e-6■■■■■ 37.9
SF3B1O75533 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.22e-6■■■■■ 37.9
SF3B1O75533 TTC17-202ENST00000299240 3648 ntTSL 1 (best) BASIC13.02□□□□□ -0.332e-6■■■■■ 37.9
SF3B1O75533 EIF3B-208ENST00000466199 734 ntTSL 29.76□□□□□ -0.855e-7■■■■■ 37.8
SF3B1O75533 ARFGAP1-204ENST00000395285 2697 ntTSL 216.72■□□□□ 0.271e-7■■■■■ 37.8
SF3B1O75533 SRSF6-202ENST00000483871 1680 ntTSL 215.13■□□□□ 0.012e-6■■■■■ 37.8
SF3B1O75533 SRSF6-201ENST00000244020 4325 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.892e-6■■■■■ 37.8
SF3B1O75533 CDC42BPA-208ENST00000442054 3786 ntTSL 1 (best)7.87□□□□□ -1.154e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-206ENST00000546764 581 ntTSL 424.21■■□□□ 1.473e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-225ENST00000552004 530 ntTSL 423.29■■□□□ 1.323e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-219ENST00000550149 570 ntTSL 419.58■□□□□ 0.733e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-212ENST00000548320 554 ntTSL 419.09■□□□□ 0.653e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-222ENST00000551145 584 ntTSL 419.09■□□□□ 0.653e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-213ENST00000548598 582 ntTSL 418.6■□□□□ 0.573e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-207ENST00000546786 568 ntTSL 318.08■□□□□ 0.493e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-220ENST00000550651 551 ntTSL 417.93■□□□□ 0.463e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-228ENST00000552921 563 ntTSL 517.43■□□□□ 0.383e-6■■■■■ 37.8
SF3B1O75533 RACGAP1-214ENST00000548644 624 ntTSL 316.61■□□□□ 0.253e-6■■■■■ 37.8
Retrieved 100 of 46,956 protein–RNA pairs in 3996.6 ms