RNA–Protein interactions for RNA: ENST00000449502.5

RFC4-210, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 799 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-210ENST00000449502 NISCHQ9Y2I1 1504 aa21.85■■□□□ 1.09
RFC4-210ENST00000449502 CCDC180Q9P1Z9 1646 aa19.02■□□□□ 0.64
RFC4-210ENST00000449502 DCAF8L2P0C7V8 631 aa18.32■□□□□ 0.52
RFC4-210ENST00000449502 ZCCHC6Q5VYS8 1495 aaKnown RBP18.32■□□□□ 0.52
RFC4-210ENST00000449502 ABCC9O60706 1549 aa18.23■□□□□ 0.51
RFC4-210ENST00000449502 DCAF1Q9Y4B6 1507 aa18.06■□□□□ 0.48
RFC4-210ENST00000449502 MYO15BQ96JP2 1530 aa17.9■□□□□ 0.46
RFC4-210ENST00000449502 SHROOM4Q9ULL8 1493 aa17.86■□□□□ 0.45
RFC4-210ENST00000449502 NACADO15069 1562 aa17.85■□□□□ 0.45
RFC4-210ENST00000449502 RB1CC1Q8TDY2 1594 aa17.72■□□□□ 0.43
RFC4-210ENST00000449502 SCRIBQ14160 1630 aa17.54■□□□□ 0.4
RFC4-210ENST00000449502 PABPN1Q86U42 306 aaKnown RBP eCLIP17.23■□□□□ 0.35
RFC4-210ENST00000449502 SUPT5HO00267 1087 aaKnown RBP17.19■□□□□ 0.34
RFC4-210ENST00000449502 UNC13AQ9UPW8 1703 aa17.07■□□□□ 0.32
RFC4-210ENST00000449502 BICRAQ9NZM4 1560 aa17.06■□□□□ 0.32
RFC4-210ENST00000449502 CECR2Q9BXF3 1484 aa16.98■□□□□ 0.31
RFC4-210ENST00000449502 RSF1Q96T23 1441 aaPredicted RBP16.95■□□□□ 0.3
RFC4-210ENST00000449502 BAZ1AQ9NRL2 1556 aaPredicted RBP16.91■□□□□ 0.3
RFC4-210ENST00000449502 MROH2BQ7Z745 1585 aa16.85■□□□□ 0.29
RFC4-210ENST00000449502 SMARCA4P51532 1647 aa16.78■□□□□ 0.28
RFC4-210ENST00000449502 WIZO95785 1651 aa16.65■□□□□ 0.26
RFC4-210ENST00000449502 EIF4G1Q04637 1599 aaKnown RBP16.64■□□□□ 0.25
RFC4-210ENST00000449502 ATAD2BQ9ULI0 1458 aa16.61■□□□□ 0.25
RFC4-210ENST00000449502 SMARCA2P51531 1590 aa16.6■□□□□ 0.25
RFC4-210ENST00000449502 TOP2AP11388 1531 aaKnown RBP16.56■□□□□ 0.24
RFC4-210ENST00000449502 PEG3Q9GZU2 1588 aa16.55■□□□□ 0.24
RFC4-210ENST00000449502 BAZ1BQ9UIG0 1483 aaKnown RBP16.54■□□□□ 0.24
RFC4-210ENST00000449502 NCAPD3P42695 1498 aa16.49■□□□□ 0.23
RFC4-210ENST00000449502 CCDC88BA6NC98 1476 aa16.42■□□□□ 0.22
RFC4-210ENST00000449502 HMGXB3Q12766 1538 aa16.41■□□□□ 0.22
RFC4-210ENST00000449502 CC2D2AQ9P2K1 1620 aa16.4■□□□□ 0.22
RFC4-210ENST00000449502 CHIC1Q5VXU3 224 aa16.32■□□□□ 0.2
RFC4-210ENST00000449502 TRIM41Q8WV44 630 aa16.2■□□□□ 0.18
RFC4-210ENST00000449502 DNAJC5BQ9UF47 199 aa16.13■□□□□ 0.17
RFC4-210ENST00000449502 CADPSQ9ULU8 1353 aa16.12■□□□□ 0.17
RFC4-210ENST00000449502 CFTRP13569 1480 aa16.09■□□□□ 0.17
RFC4-210ENST00000449502 WRNQ14191 1432 aaPredicted RBP eCLIP16■□□□□ 0.15
RFC4-210ENST00000449502 ABCC8Q09428 1581 aa15.97■□□□□ 0.15
RFC4-210ENST00000449502 PDS5BQ9NTI5 1447 aa15.92■□□□□ 0.14
RFC4-210ENST00000449502 LAMC3Q9Y6N6 1575 aa15.91■□□□□ 0.14
RFC4-210ENST00000449502 FANCD2Q9BXW9 1451 aa15.91■□□□□ 0.14
RFC4-210ENST00000449502 NESP48681 1621 aa15.9■□□□□ 0.14
RFC4-210ENST00000449502 FAM9AQ8IZU1 332 aaPredicted RBP15.88■□□□□ 0.13
RFC4-210ENST00000449502 CEP164Q9UPV0 1460 aa15.83■□□□□ 0.12
RFC4-210ENST00000449502 SYNJ1O43426 1573 aa15.8■□□□□ 0.12
RFC4-210ENST00000449502 CUX1P39880 1505 aa15.78■□□□□ 0.12
RFC4-210ENST00000449502 TOP2BQ02880 1626 aa15.77■□□□□ 0.12
RFC4-210ENST00000449502 PRDM2Q13029 1718 aa15.77■□□□□ 0.11
RFC4-210ENST00000449502 EEA1Q15075 1411 aa15.76■□□□□ 0.11
RFC4-210ENST00000449502 ERCC6Q03468 1493 aa15.72■□□□□ 0.11
RFC4-210ENST00000449502 SOGA1O94964 1423 aa15.72■□□□□ 0.11
RFC4-210ENST00000449502 CSRNP3Q8WYN3 585 aa15.71■□□□□ 0.11
RFC4-210ENST00000449502 BIVM-ERCC5R4GMW8 1640 aa15.71■□□□□ 0.11
RFC4-210ENST00000449502 LOC105371045A0A1W2PR82 267 aa15.7■□□□□ 0.1
RFC4-210ENST00000449502 DNMBPQ6XZF7 1577 aa15.69■□□□□ 0.1
RFC4-210ENST00000449502 TOPBP1Q92547 1522 aa15.68■□□□□ 0.1
RFC4-210ENST00000449502 EHMT2Q96KQ7 1210 aa15.67■□□□□ 0.1
RFC4-210ENST00000449502 FGD5Q6ZNL6 1462 aa15.66■□□□□ 0.1
RFC4-210ENST00000449502 MRC2Q9UBG0 1479 aa15.66■□□□□ 0.1
RFC4-210ENST00000449502 KIF27Q86VH2 1401 aa15.65■□□□□ 0.1
RFC4-210ENST00000449502 URB2Q14146 1524 aaKnown RBP15.64■□□□□ 0.09
RFC4-210ENST00000449502 RUSC2Q8N2Y8 1516 aa15.61■□□□□ 0.09
RFC4-210ENST00000449502 CUX2O14529 1486 aa15.6■□□□□ 0.09
RFC4-210ENST00000449502 POLA1P09884 1462 aaPredicted RBP15.59■□□□□ 0.09
RFC4-210ENST00000449502 KIF21AQ7Z4S6 1674 aa15.58■□□□□ 0.08
RFC4-210ENST00000449502 UBTFP17480 764 aaKnown RBP15.56■□□□□ 0.08
RFC4-210ENST00000449502 RAD54L2Q9Y4B4 1467 aa15.55■□□□□ 0.08
RFC4-210ENST00000449502 ABCA10Q8WWZ4 1543 aa15.53■□□□□ 0.08
RFC4-210ENST00000449502 WDR62O43379 1518 aa15.51■□□□□ 0.07
RFC4-210ENST00000449502 GOLGA3Q08378 1498 aa15.51■□□□□ 0.07
RFC4-210ENST00000449502 IGF1RP08069 1367 aa15.48■□□□□ 0.07
RFC4-210ENST00000449502 IFT140Q96RY7 1462 aa15.47■□□□□ 0.07
RFC4-210ENST00000449502 TDRD9Q8NDG6 1382 aaKnown RBP15.47■□□□□ 0.07
RFC4-210ENST00000449502 TNIKQ9UKE5 1360 aa15.45■□□□□ 0.06
RFC4-210ENST00000449502 CARMIL1Q5VZK9 1371 aa15.44■□□□□ 0.06
RFC4-210ENST00000449502 GAPVD1Q14C86 1478 aa15.42■□□□□ 0.06
RFC4-210ENST00000449502 PRXQ9BXM0 1461 aa15.42■□□□□ 0.06
RFC4-210ENST00000449502 KIF21BO75037 1637 aa15.42■□□□□ 0.06
RFC4-210ENST00000449502 THOC2Q8NI27 1593 aaKnown RBP15.41■□□□□ 0.06
RFC4-210ENST00000449502 RAPGEF2Q9Y4G8 1499 aa15.4■□□□□ 0.06
RFC4-210ENST00000449502 ERICH3Q5RHP9 1530 aa15.37■□□□□ 0.05
RFC4-210ENST00000449502 TARBP1Q13395 1621 aaKnown RBP15.36■□□□□ 0.05
RFC4-210ENST00000449502 AQRO60306 1485 aaKnown RBP eCLIP15.36■□□□□ 0.052e-7■■■■□ 23.4
RFC4-210ENST00000449502 GRIN2BQ13224 1484 aa15.33■□□□□ 0.05
RFC4-210ENST00000449502 RANGAP1P46060 587 aaPredicted RBP15.33■□□□□ 0.04
RFC4-210ENST00000449502 CEP162Q5TB80 1403 aa15.33■□□□□ 0.04
RFC4-210ENST00000449502 ZNF608Q9ULD9 1512 aaPredicted RBP15.31■□□□□ 0.04
RFC4-210ENST00000449502 WDR97A6NE52 1622 aa15.31■□□□□ 0.04
RFC4-210ENST00000449502 ABCA5Q8WWZ7 1642 aa15.31■□□□□ 0.04
RFC4-210ENST00000449502 FHAD1B1AJZ9 1412 aa15.28■□□□□ 0.04
RFC4-210ENST00000449502 CUL7Q14999 1698 aa15.28■□□□□ 0.04
RFC4-210ENST00000449502 CLIP1P30622 1438 aa15.26■□□□□ 0.03
RFC4-210ENST00000449502 CHMP7Q8WUX9 453 aaPredicted RBP15.24■□□□□ 0.03
RFC4-210ENST00000449502 SNAPC4Q5SXM2 1469 aa15.22■□□□□ 0.03
RFC4-210ENST00000449502 FBLN2P98095 1184 aa15.22■□□□□ 0.03
RFC4-210ENST00000449502 EIF4G3O43432 1585 aaKnown RBP15.2■□□□□ 0.02
RFC4-210ENST00000449502 MAGI1Q96QZ7 1491 aaPredicted RBP15.2■□□□□ 0.02
RFC4-210ENST00000449502 PBRM1Q86U86 1689 aa15.16■□□□□ 0.02
RFC4-210ENST00000449502 ADAMTS12P58397 1594 aa15.16■□□□□ 0.02
RFC4-210ENST00000449502 APLP2Q06481 763 aa15.15■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 104.5 ms