RNA–Protein interactions for RNA: ENST00000568294.5

HDGFL3-206, Transcript of HDGF like 3, humanhuman

TSL 4

Gene HDGFL3, Length 3,397 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-206ENST00000568294 NISCHQ9Y2I1 1504 aa17.49■□□□□ 0.39
HDGFL3-206ENST00000568294 SHROOM4Q9ULL8 1493 aa15.91■□□□□ 0.14
HDGFL3-206ENST00000568294 SUPT5HO00267 1087 aaKnown RBP15.7■□□□□ 0.1
HDGFL3-206ENST00000568294 DCAF8L2P0C7V8 631 aa15.54■□□□□ 0.08
HDGFL3-206ENST00000568294 PCGF6Q9BYE7 350 aa14.98□□□□□ -0.01
HDGFL3-206ENST00000568294 CHIC1Q5VXU3 224 aa14.92□□□□□ -0.02
HDGFL3-206ENST00000568294 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
HDGFL3-206ENST00000568294 EHMT2Q96KQ7 1210 aa14.85□□□□□ -0.03
HDGFL3-206ENST00000568294 PPARGC1BQ86YN6 1023 aaKnown RBP14.83□□□□□ -0.04
HDGFL3-206ENST00000568294 LOC105371045A0A1W2PR82 267 aa14.81□□□□□ -0.04
HDGFL3-206ENST00000568294 ZCCHC6Q5VYS8 1495 aaKnown RBP14.75□□□□□ -0.05
HDGFL3-206ENST00000568294 HRCP23327 699 aa14.74□□□□□ -0.05
HDGFL3-206ENST00000568294 FAM9AQ8IZU1 332 aaPredicted RBP14.65□□□□□ -0.06
HDGFL3-206ENST00000568294 CCDC180Q9P1Z9 1646 aa14.41□□□□□ -0.1
HDGFL3-206ENST00000568294 TRIM41Q8WV44 630 aa14.37□□□□□ -0.11
HDGFL3-206ENST00000568294 TTBK1Q5TCY1 1321 aaPredicted RBP14.34□□□□□ -0.11
HDGFL3-206ENST00000568294 TRIM26Q12899 539 aaPredicted RBP14.3□□□□□ -0.12
HDGFL3-206ENST00000568294 SCRIBQ14160 1630 aa14.18□□□□□ -0.14
HDGFL3-206ENST00000568294 DCAF1Q9Y4B6 1507 aa14.17□□□□□ -0.14
HDGFL3-206ENST00000568294 RSF1Q96T23 1441 aaPredicted RBP14.06□□□□□ -0.16
HDGFL3-206ENST00000568294 ABCC9O60706 1549 aa14.06□□□□□ -0.16
HDGFL3-206ENST00000568294 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.05□□□□□ -0.16
HDGFL3-206ENST00000568294 RB1CC1Q8TDY2 1594 aa13.98□□□□□ -0.17
HDGFL3-206ENST00000568294 CCER1Q8TC90 406 aaPredicted RBP13.97□□□□□ -0.17
HDGFL3-206ENST00000568294 ZEB1P37275 1124 aaPredicted RBP13.92□□□□□ -0.18
HDGFL3-206ENST00000568294 CECR2Q9BXF3 1484 aa13.92□□□□□ -0.18
HDGFL3-206ENST00000568294 RANGAP1P46060 587 aaPredicted RBP13.91□□□□□ -0.18
HDGFL3-206ENST00000568294 SCAF1Q9H7N4 1312 aaKnown RBP13.84□□□□□ -0.19
HDGFL3-206ENST00000568294 UBTFP17480 764 aaKnown RBP13.8□□□□□ -0.2
HDGFL3-206ENST00000568294 MROH2BQ7Z745 1585 aa13.77□□□□□ -0.2
HDGFL3-206ENST00000568294 YTHDC1Q96MU7 727 aaKnown RBP13.76□□□□□ -0.21
HDGFL3-206ENST00000568294 PABPN1Q86U42 306 aaKnown RBP eCLIP13.74□□□□□ -0.21
HDGFL3-206ENST00000568294 WIZO95785 1651 aa13.69□□□□□ -0.22
HDGFL3-206ENST00000568294 HNRNPUL2Q1KMD3 747 aaKnown RBP13.69□□□□□ -0.22
HDGFL3-206ENST00000568294 NEUROD1Q13562 356 aa13.66□□□□□ -0.22
HDGFL3-206ENST00000568294 DIEXFQ68CQ4 756 aaKnown RBP13.66□□□□□ -0.22
HDGFL3-206ENST00000568294 ABCC8Q09428 1581 aa13.63□□□□□ -0.23
HDGFL3-206ENST00000568294 GTF3C3Q9Y5Q9 886 aa13.6□□□□□ -0.23
HDGFL3-206ENST00000568294 CCDC88BA6NC98 1476 aa13.57□□□□□ -0.24
HDGFL3-206ENST00000568294 SOGA1O94964 1423 aa13.57□□□□□ -0.24
HDGFL3-206ENST00000568294 ACIN1Q9UKV3 1341 aaKnown RBP13.56□□□□□ -0.24
HDGFL3-206ENST00000568294 CSRNP3Q8WYN3 585 aa13.52□□□□□ -0.25
HDGFL3-206ENST00000568294 CEP162Q5TB80 1403 aa13.51□□□□□ -0.25
HDGFL3-206ENST00000568294 CENPBP07199 599 aaPredicted RBP13.51□□□□□ -0.25
HDGFL3-206ENST00000568294 RUSC2Q8N2Y8 1516 aa13.5□□□□□ -0.25
HDGFL3-206ENST00000568294 APLP2Q06481 763 aa13.48□□□□□ -0.25
HDGFL3-206ENST00000568294 NACADO15069 1562 aa13.47□□□□□ -0.25
HDGFL3-206ENST00000568294 ITGAEP38570 1179 aa13.42□□□□□ -0.26
HDGFL3-206ENST00000568294 PELP1Q8IZL8 1130 aaKnown RBP13.41□□□□□ -0.26
HDGFL3-206ENST00000568294 ZNF316A6NFI3 1004 aaPredicted RBP13.4□□□□□ -0.26
HDGFL3-206ENST00000568294 BAZ1AQ9NRL2 1556 aaPredicted RBP13.39□□□□□ -0.27
HDGFL3-206ENST00000568294 MIER1Q8N108 512 aa13.38□□□□□ -0.27
HDGFL3-206ENST00000568294 TNIKQ9UKE5 1360 aa13.32□□□□□ -0.28
HDGFL3-206ENST00000568294 TOP2AP11388 1531 aaKnown RBP13.29□□□□□ -0.28
HDGFL3-206ENST00000568294 WRNQ14191 1432 aaPredicted RBP eCLIP13.28□□□□□ -0.28
HDGFL3-206ENST00000568294 SMARCA2P51531 1590 aa13.28□□□□□ -0.28
HDGFL3-206ENST00000568294 SMARCA4P51532 1647 aa13.26□□□□□ -0.29
HDGFL3-206ENST00000568294 CLIP1P30622 1438 aa13.26□□□□□ -0.29
HDGFL3-206ENST00000568294 ATP1B4Q9UN42 357 aaPredicted RBP13.25□□□□□ -0.29
HDGFL3-206ENST00000568294 GOLGA3Q08378 1498 aa13.25□□□□□ -0.29
HDGFL3-206ENST00000568294 SLC24A1O60721 1099 aa13.23□□□□□ -0.29
HDGFL3-206ENST00000568294 EIF4G1Q04637 1599 aaKnown RBP13.21□□□□□ -0.29
HDGFL3-206ENST00000568294 RAPGEF2Q9Y4G8 1499 aa13.16□□□□□ -0.3
HDGFL3-206ENST00000568294 KANK4Q5T7N3 995 aaPredicted RBP13.15□□□□□ -0.3
HDGFL3-206ENST00000568294 P3H3Q8IVL6 736 aa13.13□□□□□ -0.31
HDGFL3-206ENST00000568294 EEA1Q15075 1411 aa13.13□□□□□ -0.31
HDGFL3-206ENST00000568294 CEP164Q9UPV0 1460 aa13.12□□□□□ -0.31
HDGFL3-206ENST00000568294 BCANQ96GW7 911 aa13.11□□□□□ -0.31
HDGFL3-206ENST00000568294 SYNJ1O43426 1573 aa13.1□□□□□ -0.31
HDGFL3-206ENST00000568294 HIRIP3Q9BW71 556 aaPredicted RBP13.09□□□□□ -0.31
HDGFL3-206ENST00000568294 VPS8Q8N3P4 1428 aa13.08□□□□□ -0.32
HDGFL3-206ENST00000568294 BAZ1BQ9UIG0 1483 aaKnown RBP13.07□□□□□ -0.32
HDGFL3-206ENST00000568294 FAM50AQ14320 339 aaKnown RBP13.05□□□□□ -0.32
HDGFL3-206ENST00000568294 KCNH8Q96L42 1107 aa13.04□□□□□ -0.32
HDGFL3-206ENST00000568294 UNC13AQ9UPW8 1703 aa13.01□□□□□ -0.33
HDGFL3-206ENST00000568294 ATAD2BQ9ULI0 1458 aa13□□□□□ -0.33
HDGFL3-206ENST00000568294 KIF21BO75037 1637 aa12.97□□□□□ -0.33
HDGFL3-206ENST00000568294 DHX57Q6P158 1386 aaKnown RBP12.96□□□□□ -0.33
HDGFL3-206ENST00000568294 SIN3AQ96ST3 1273 aa12.96□□□□□ -0.34
HDGFL3-206ENST00000568294 DDX10Q13206 875 aaKnown RBP12.95□□□□□ -0.34
HDGFL3-206ENST00000568294 BICRAQ9NZM4 1560 aa12.95□□□□□ -0.34
HDGFL3-206ENST00000568294 SUPT16HQ9Y5B9 1047 aaKnown RBP12.91□□□□□ -0.34
HDGFL3-206ENST00000568294 ARAP1Q96P48 1450 aa12.89□□□□□ -0.35
HDGFL3-206ENST00000568294 CNGB1Q14028 1251 aaPredicted RBP12.88□□□□□ -0.35
HDGFL3-206ENST00000568294 TRIM52Q96A61 297 aa12.88□□□□□ -0.35
HDGFL3-206ENST00000568294 ARID3CA6NKF2 412 aa12.87□□□□□ -0.35
HDGFL3-206ENST00000568294 CCNB3Q8WWL7 1395 aa12.86□□□□□ -0.35
HDGFL3-206ENST00000568294 FKBP8Q14318 412 aa12.84□□□□□ -0.35
HDGFL3-206ENST00000568294 KIF27Q86VH2 1401 aa12.83□□□□□ -0.36
HDGFL3-206ENST00000568294 RAB3GAP2Q9H2M9 1393 aa12.83□□□□□ -0.36
HDGFL3-206ENST00000568294 CUX2O14529 1486 aa12.8□□□□□ -0.36
HDGFL3-206ENST00000568294 IRX6P78412 446 aaPredicted RBP12.77□□□□□ -0.36
HDGFL3-206ENST00000568294 PRXQ9BXM0 1461 aa12.76□□□□□ -0.37
HDGFL3-206ENST00000568294 CUX1P39880 1505 aa12.76□□□□□ -0.37
HDGFL3-206ENST00000568294 TOP2BQ02880 1626 aa12.75□□□□□ -0.37
HDGFL3-206ENST00000568294 ARHGAP35Q9NRY4 1499 aa12.75□□□□□ -0.37
HDGFL3-206ENST00000568294 CHIC2Q9UKJ5 165 aa12.74□□□□□ -0.37
HDGFL3-206ENST00000568294 NEFLP07196 543 aa12.73□□□□□ -0.37
HDGFL3-206ENST00000568294 SENP3-EIF4A1A0A087X0R7 540 aa12.73□□□□□ -0.37
HDGFL3-206ENST00000568294 TSHZ2Q9NRE2 1034 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms