RNA–Protein interactions for RNA: ENST00000418288.5

RFC4-205, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-205ENST00000418288 CHIC1Q5VXU3 224 aa12.66□□□□□ -0.38
RFC4-205ENST00000418288 AEBP2Q6ZN18 517 aaPredicted RBP12.18□□□□□ -0.46
RFC4-205ENST00000418288 PHF23Q9BUL5 403 aaPredicted RBP11.29□□□□□ -0.6
RFC4-205ENST00000418288 PLPPR3Q6T4P5 718 aa10.59□□□□□ -0.71
RFC4-205ENST00000418288 EHMT2Q96KQ7 1210 aa10.55□□□□□ -0.72
RFC4-205ENST00000418288 KCNA4P22459 653 aa10.26□□□□□ -0.77
RFC4-205ENST00000418288 SLC24A1O60721 1099 aa10.22□□□□□ -0.77
RFC4-205ENST00000418288 POTEDQ86YR6 584 aa10.21□□□□□ -0.77
RFC4-205ENST00000418288 CSRNP3Q8WYN3 585 aa10.1□□□□□ -0.79
RFC4-205ENST00000418288 SENP3Q9H4L4 574 aaPredicted RBP10.08□□□□□ -0.8
RFC4-205ENST00000418288 ADRA2BP18089 450 aa9.98□□□□□ -0.81
RFC4-205ENST00000418288 SLC4A1APQ9BWU0 796 aaKnown RBP9.86□□□□□ -0.83
RFC4-205ENST00000418288 RTN4Q9NQC3 1192 aaKnown RBP9.77□□□□□ -0.85
RFC4-205ENST00000418288 AMER1Q5JTC6 1135 aaPredicted RBP9.69□□□□□ -0.86
RFC4-205ENST00000418288 PPP6R1Q9UPN7 881 aa9.66□□□□□ -0.86
RFC4-205ENST00000418288 ZBTB22O15209 634 aa9.51□□□□□ -0.89
RFC4-205ENST00000418288 PPP4R3CPQ6ZMV5 832 aa9.47□□□□□ -0.89
RFC4-205ENST00000418288 NCBP3Q53F19 620 aaKnown RBP9.38□□□□□ -0.91
RFC4-205ENST00000418288 NPM3O75607 178 aaKnown RBP9.36□□□□□ -0.91
RFC4-205ENST00000418288 FOXD1Q16676 465 aa9.32□□□□□ -0.92
RFC4-205ENST00000418288 FOXD4L1Q9NU39 408 aa9.15□□□□□ -0.94
RFC4-205ENST00000418288 FKBP8Q14318 412 aa9.02□□□□□ -0.97
RFC4-205ENST00000418288 CNKSR2Q8WXI2 1034 aa9□□□□□ -0.97
RFC4-205ENST00000418288 DNAJC5BQ9UF47 199 aa9□□□□□ -0.97
RFC4-205ENST00000418288 PRKCSHP14314 528 aaPredicted RBP8.95□□□□□ -0.98
RFC4-205ENST00000418288 PIAS4Q8N2W9 510 aaPredicted RBP8.94□□□□□ -0.98
RFC4-205ENST00000418288 PLCB2Q00722 1185 aa8.92□□□□□ -0.98
RFC4-205ENST00000418288 TAOK2Q9UL54 1235 aa8.85□□□□□ -0.99
RFC4-205ENST00000418288 BCANQ96GW7 911 aa8.84□□□□□ -0.99
RFC4-205ENST00000418288 MSH5O43196 834 aa8.74□□□□□ -1.01
RFC4-205ENST00000418288 HAP1P54257 671 aaPredicted RBP8.74□□□□□ -1.01
RFC4-205ENST00000418288 ATXN8OSP0DMR3 200 aa8.73□□□□□ -1.01
RFC4-205ENST00000418288 DAXXQ9UER7 740 aaPredicted RBP8.71□□□□□ -1.02
RFC4-205ENST00000418288 SCAF1Q9H7N4 1312 aaKnown RBP8.7□□□□□ -1.02
RFC4-205ENST00000418288 TPRNQ4KMQ1 711 aa8.68□□□□□ -1.02
RFC4-205ENST00000418288 SLC4A2P04920 1241 aa8.67□□□□□ -1.02
RFC4-205ENST00000418288 VSIG10Q8N0Z9 540 aa8.65□□□□□ -1.02
RFC4-205ENST00000418288 RNF216Q9NWF9 866 aaPredicted RBP8.62□□□□□ -1.03
RFC4-205ENST00000418288 TIMELESSQ9UNS1 1208 aa8.61□□□□□ -1.03
RFC4-205ENST00000418288 MYCNP04198 464 aaPredicted RBP8.59□□□□□ -1.03
RFC4-205ENST00000418288 ARXQ96QS3 562 aa8.54□□□□□ -1.04
RFC4-205ENST00000418288 MAPK8IP2Q13387 824 aaPredicted RBP8.53□□□□□ -1.04
RFC4-205ENST00000418288 KDM2AQ9Y2K7 1162 aa8.53□□□□□ -1.04
RFC4-205ENST00000418288 TULP1O00294 542 aaPredicted RBP8.49□□□□□ -1.05
RFC4-205ENST00000418288 FBLN2P98095 1184 aa8.45□□□□□ -1.06
RFC4-205ENST00000418288 DCAF8L2P0C7V8 631 aa8.43□□□□□ -1.06
RFC4-205ENST00000418288 HOXD11P31277 338 aaPredicted RBP8.4□□□□□ -1.06
RFC4-205ENST00000418288 PKD2Q13563 968 aa8.39□□□□□ -1.07
RFC4-205ENST00000418288 FBXO3Q9UK99 471 aa8.39□□□□□ -1.07
RFC4-205ENST00000418288 ATF5Q9Y2D1 282 aaPredicted RBP8.38□□□□□ -1.07
RFC4-205ENST00000418288 GTF3C3Q9Y5Q9 886 aa8.38□□□□□ -1.07
RFC4-205ENST00000418288 VASPP50552 380 aaPredicted RBP8.34□□□□□ -1.07
RFC4-205ENST00000418288 BBXQ8WY36 941 aaPredicted RBP8.33□□□□□ -1.08
RFC4-205ENST00000418288 IFNLR1Q8IU57 520 aaPredicted RBP8.32□□□□□ -1.08
RFC4-205ENST00000418288 ERICH6Q7L0X2 663 aa8.3□□□□□ -1.08
RFC4-205ENST00000418288 HOMEZQ8IX15 550 aa8.3□□□□□ -1.08
RFC4-205ENST00000418288 NPM1P06748 294 aaKnown RBP eCLIP8.29□□□□□ -1.08
RFC4-205ENST00000418288 PAXIP1Q6ZW49 1069 aaPredicted RBP8.29□□□□□ -1.08
RFC4-205ENST00000418288 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.29□□□□□ -1.08
RFC4-205ENST00000418288 PROM2Q8N271 834 aa8.28□□□□□ -1.08
RFC4-205ENST00000418288 TMEM132AQ24JP5 1023 aa8.24□□□□□ -1.09
RFC4-205ENST00000418288 CFAP44Q96MT7 982 aa8.24□□□□□ -1.09
RFC4-205ENST00000418288 TSHZ2Q9NRE2 1034 aa8.23□□□□□ -1.09
RFC4-205ENST00000418288 DMRT2Q9Y5R5 561 aa8.23□□□□□ -1.09
RFC4-205ENST00000418288 DNAJC5Q9H3Z4 198 aa8.21□□□□□ -1.1
RFC4-205ENST00000418288 SPDYE4A6NLX3 237 aa8.19□□□□□ -1.1
RFC4-205ENST00000418288 NBR1Q14596 966 aa8.16□□□□□ -1.1
RFC4-205ENST00000418288 SPRYD3Q8NCJ5 442 aa8.14□□□□□ -1.11
RFC4-205ENST00000418288 CACNB1Q02641 598 aaPredicted RBP8.12□□□□□ -1.11
RFC4-205ENST00000418288 C14orf37Q86TY3 774 aa8.11□□□□□ -1.11
RFC4-205ENST00000418288 ECM2O94769 699 aaPredicted RBP8.1□□□□□ -1.11
RFC4-205ENST00000418288 SAMD1Q6SPF0 538 aaPredicted RBP8.08□□□□□ -1.12
RFC4-205ENST00000418288 RGL2O15211 777 aa8.06□□□□□ -1.12
RFC4-205ENST00000418288 MKRN4PQ13434 485 aaPredicted RBP8.06□□□□□ -1.12
RFC4-205ENST00000418288 ZNF219Q9P2Y4 722 aaPredicted RBP8.05□□□□□ -1.12
RFC4-205ENST00000418288 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP8.03□□□□□ -1.12
RFC4-205ENST00000418288 HNRNPUL2Q1KMD3 747 aaKnown RBP8.03□□□□□ -1.12
RFC4-205ENST00000418288 SPOCK2Q92563 424 aa8.01□□□□□ -1.13
RFC4-205ENST00000418288 U3KPZ7 1027 aaPredicted RBP7.99□□□□□ -1.13
RFC4-205ENST00000418288 PODXL2Q9NZ53 605 aa7.98□□□□□ -1.13
RFC4-205ENST00000418288 RANGAP1P46060 587 aaPredicted RBP7.95□□□□□ -1.14
RFC4-205ENST00000418288 CHGAP10645 457 aaKnown RBP7.93□□□□□ -1.14
RFC4-205ENST00000418288 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.91□□□□□ -1.149e-7■■□□□ 11.9
RFC4-205ENST00000418288 SUPT5HO00267 1087 aaKnown RBP7.9□□□□□ -1.14
RFC4-205ENST00000418288 KLHL34Q8N239 644 aa7.9□□□□□ -1.14
RFC4-205ENST00000418288 HS6ST3Q8IZP7 471 aa7.86□□□□□ -1.15
RFC4-205ENST00000418288 BRPF1P55201 1214 aaPredicted RBP7.82□□□□□ -1.16
RFC4-205ENST00000418288 UBTFP17480 764 aaKnown RBP7.8□□□□□ -1.16
RFC4-205ENST00000418288 NKX1-1Q15270 411 aaPredicted RBP7.79□□□□□ -1.16
RFC4-205ENST00000418288 POTEHQ6S545 545 aa7.79□□□□□ -1.16
RFC4-205ENST00000418288 TRIM26Q12899 539 aaPredicted RBP7.78□□□□□ -1.16
RFC4-205ENST00000418288 GTPBP6O43824 516 aaPredicted RBP7.76□□□□□ -1.17
RFC4-205ENST00000418288 NPM2Q86SE8 214 aaKnown RBP7.74□□□□□ -1.17
RFC4-205ENST00000418288 LMOD2Q6P5Q4 547 aa7.73□□□□□ -1.17
RFC4-205ENST00000418288 RNF25Q96BH1 459 aaPredicted RBP7.73□□□□□ -1.17
RFC4-205ENST00000418288 HRCP23327 699 aa7.72□□□□□ -1.17
RFC4-205ENST00000418288 APLP2Q06481 763 aa7.72□□□□□ -1.17
RFC4-205ENST00000418288 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.72□□□□□ -1.17
RFC4-205ENST00000418288 STAG3Q9UJ98 1225 aa7.72□□□□□ -1.17
RFC4-205ENST00000418288 DCAF8L1A6NGE4 600 aa7.71□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 63.6 ms