RNA–Protein interactions for RNA: ENST00000260810.9

TOPBP1-201, Transcript of DNA topoisomerase II binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TOPBP1, Length 5,378 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOPBP1-201ENST00000260810 NISCHQ9Y2I1 1504 aa15.22■□□□□ 0.03
TOPBP1-201ENST00000260810 CCDC180Q9P1Z9 1646 aa13.31□□□□□ -0.28
TOPBP1-201ENST00000260810 UNC13AQ9UPW8 1703 aa12.97□□□□□ -0.33
TOPBP1-201ENST00000260810 ZCCHC6Q5VYS8 1495 aaKnown RBP12.91□□□□□ -0.34
TOPBP1-201ENST00000260810 BICRAQ9NZM4 1560 aa12.59□□□□□ -0.39
TOPBP1-201ENST00000260810 DCAF1Q9Y4B6 1507 aa12.59□□□□□ -0.39
TOPBP1-201ENST00000260810 MYO15BQ96JP2 1530 aa12.42□□□□□ -0.42
TOPBP1-201ENST00000260810 ABCC9O60706 1549 aa12.29□□□□□ -0.44
TOPBP1-201ENST00000260810 EIF4G1Q04637 1599 aaKnown RBP12.17□□□□□ -0.46
TOPBP1-201ENST00000260810 SCRIBQ14160 1630 aa12.13□□□□□ -0.47
TOPBP1-201ENST00000260810 CECR2Q9BXF3 1484 aa12.12□□□□□ -0.47
TOPBP1-201ENST00000260810 NACADO15069 1562 aa12.07□□□□□ -0.48
TOPBP1-201ENST00000260810 MROH2BQ7Z745 1585 aa11.99□□□□□ -0.49
TOPBP1-201ENST00000260810 WIZO95785 1651 aa11.97□□□□□ -0.49
TOPBP1-201ENST00000260810 DNAJC5BQ9UF47 199 aa11.95□□□□□ -0.5
TOPBP1-201ENST00000260810 PEG3Q9GZU2 1588 aa11.89□□□□□ -0.51
TOPBP1-201ENST00000260810 RB1CC1Q8TDY2 1594 aa11.83□□□□□ -0.51
TOPBP1-201ENST00000260810 SHROOM4Q9ULL8 1493 aa11.81□□□□□ -0.52
TOPBP1-201ENST00000260810 RSF1Q96T23 1441 aaPredicted RBP11.8□□□□□ -0.52
TOPBP1-201ENST00000260810 SMARCA4P51532 1647 aa11.78□□□□□ -0.52
TOPBP1-201ENST00000260810 BAZ1AQ9NRL2 1556 aaPredicted RBP11.63□□□□□ -0.55
TOPBP1-201ENST00000260810 SMARCA2P51531 1590 aa11.62□□□□□ -0.55
TOPBP1-201ENST00000260810 CC2D2AQ9P2K1 1620 aa11.49□□□□□ -0.57
TOPBP1-201ENST00000260810 ATAD2BQ9ULI0 1458 aa11.47□□□□□ -0.57
TOPBP1-201ENST00000260810 PABPN1Q86U42 306 aaKnown RBP eCLIP11.43□□□□□ -0.58
TOPBP1-201ENST00000260810 TOP2AP11388 1531 aaKnown RBP11.4□□□□□ -0.58
TOPBP1-201ENST00000260810 PRDM2Q13029 1718 aa11.4□□□□□ -0.58
TOPBP1-201ENST00000260810 CCDC88BA6NC98 1476 aa11.39□□□□□ -0.59
TOPBP1-201ENST00000260810 SYNJ1O43426 1573 aa11.33□□□□□ -0.6
TOPBP1-201ENST00000260810 HMGXB3Q12766 1538 aa11.32□□□□□ -0.6
TOPBP1-201ENST00000260810 NCAPD3P42695 1498 aa11.31□□□□□ -0.6
TOPBP1-201ENST00000260810 ABCC8Q09428 1581 aa11.3□□□□□ -0.6
TOPBP1-201ENST00000260810 WDR97A6NE52 1622 aa11.29□□□□□ -0.6
TOPBP1-201ENST00000260810 KIF21AQ7Z4S6 1674 aa11.27□□□□□ -0.61
TOPBP1-201ENST00000260810 NESP48681 1621 aa11.26□□□□□ -0.61
TOPBP1-201ENST00000260810 RUSC2Q8N2Y8 1516 aa11.24□□□□□ -0.61
TOPBP1-201ENST00000260810 BIVM-ERCC5R4GMW8 1640 aa11.18□□□□□ -0.62
TOPBP1-201ENST00000260810 CUX1P39880 1505 aa11.15□□□□□ -0.62
TOPBP1-201ENST00000260810 LRRIQ1Q96JM4 1722 aa11.15□□□□□ -0.62
TOPBP1-201ENST00000260810 DCAF8L2P0C7V8 631 aa11.13□□□□□ -0.63
TOPBP1-201ENST00000260810 THOC2Q8NI27 1593 aaKnown RBP11.13□□□□□ -0.63
TOPBP1-201ENST00000260810 CFTRP13569 1480 aa11.11□□□□□ -0.63
TOPBP1-201ENST00000260810 TARBP1Q13395 1621 aaKnown RBP11.1□□□□□ -0.63
TOPBP1-201ENST00000260810 URB2Q14146 1524 aaKnown RBP11.04□□□□□ -0.64
TOPBP1-201ENST00000260810 TOP2BQ02880 1626 aa11.02□□□□□ -0.65
TOPBP1-201ENST00000260810 CUX2O14529 1486 aa11.01□□□□□ -0.65
TOPBP1-201ENST00000260810 CHIC1Q5VXU3 224 aa10.96□□□□□ -0.66
TOPBP1-201ENST00000260810 ABCA5Q8WWZ7 1642 aa10.94□□□□□ -0.66
TOPBP1-201ENST00000260810 SOGA1O94964 1423 aa10.93□□□□□ -0.66
TOPBP1-201ENST00000260810 BAZ1BQ9UIG0 1483 aaKnown RBP10.93□□□□□ -0.66
TOPBP1-201ENST00000260810 GOLGB1Q14789 3259 aaKnown RBP10.91□□□□□ -0.66
TOPBP1-201ENST00000260810 UTRNP46939 3433 aa10.88□□□□□ -0.67
TOPBP1-201ENST00000260810 SUPT5HO00267 1087 aaKnown RBP10.87□□□□□ -0.67
TOPBP1-201ENST00000260810 SRCAPQ6ZRS2 3230 aa10.86□□□□□ -0.67
TOPBP1-201ENST00000260810 LAMC3Q9Y6N6 1575 aa10.81□□□□□ -0.68
TOPBP1-201ENST00000260810 WDR62O43379 1518 aa10.81□□□□□ -0.68
TOPBP1-201ENST00000260810 ZNF608Q9ULD9 1512 aaPredicted RBP10.79□□□□□ -0.68
TOPBP1-201ENST00000260810 POLA1P09884 1462 aaPredicted RBP10.77□□□□□ -0.69
TOPBP1-201ENST00000260810 TOPBP1Q92547 1522 aa10.77□□□□□ -0.69
TOPBP1-201ENST00000260810 PBRM1Q86U86 1689 aa10.75□□□□□ -0.69
TOPBP1-201ENST00000260810 RAD54L2Q9Y4B4 1467 aa10.74□□□□□ -0.69
TOPBP1-201ENST00000260810 PRXQ9BXM0 1461 aa10.73□□□□□ -0.69
TOPBP1-201ENST00000260810 CADPSQ9ULU8 1353 aa10.72□□□□□ -0.69
TOPBP1-201ENST00000260810 DNMBPQ6XZF7 1577 aa10.7□□□□□ -0.7
TOPBP1-201ENST00000260810 ERCC6L2Q5T890 1561 aa10.67□□□□□ -0.7
TOPBP1-201ENST00000260810 FANCD2Q9BXW9 1451 aa10.67□□□□□ -0.7
TOPBP1-201ENST00000260810 EIF4G3O43432 1585 aaKnown RBP10.67□□□□□ -0.7
TOPBP1-201ENST00000260810 FGD5Q6ZNL6 1462 aa10.67□□□□□ -0.7
TOPBP1-201ENST00000260810 RAPGEF2Q9Y4G8 1499 aa10.65□□□□□ -0.7
TOPBP1-201ENST00000260810 ABCA10Q8WWZ4 1543 aa10.63□□□□□ -0.71
TOPBP1-201ENST00000260810 KIF21BO75037 1637 aa10.62□□□□□ -0.71
TOPBP1-201ENST00000260810 MAGI3Q5TCQ9 1506 aa10.61□□□□□ -0.71
TOPBP1-201ENST00000260810 LOC105371045A0A1W2PR82 267 aa10.61□□□□□ -0.71
TOPBP1-201ENST00000260810 CEP170Q5SW79 1584 aa10.6□□□□□ -0.71
TOPBP1-201ENST00000260810 WRNQ14191 1432 aaPredicted RBP eCLIP10.58□□□□□ -0.72
TOPBP1-201ENST00000260810 SAMD9Q5K651 1589 aa10.58□□□□□ -0.72
TOPBP1-201ENST00000260810 CHD1O14646 1710 aa10.57□□□□□ -0.72
TOPBP1-201ENST00000260810 SHROOM2Q13796 1616 aa10.57□□□□□ -0.72
TOPBP1-201ENST00000260810 IGF1RP08069 1367 aa10.56□□□□□ -0.72
TOPBP1-201ENST00000260810 ADAMTS12P58397 1594 aa10.54□□□□□ -0.72
TOPBP1-201ENST00000260810 ARAP1Q96P48 1450 aa10.53□□□□□ -0.72
TOPBP1-201ENST00000260810 CTTNBP2Q8WZ74 1663 aa10.53□□□□□ -0.72
TOPBP1-201ENST00000260810 SIGLEC1Q9BZZ2 1709 aa10.5□□□□□ -0.73
TOPBP1-201ENST00000260810 DISP1Q96F81 1524 aa10.48□□□□□ -0.73
TOPBP1-201ENST00000260810 SNAPC4Q5SXM2 1469 aa10.47□□□□□ -0.73
TOPBP1-201ENST00000260810 EP400Q96L91 3159 aa10.46□□□□□ -0.73
TOPBP1-201ENST00000260810 CLASP1Q7Z460 1538 aa10.46□□□□□ -0.74
TOPBP1-201ENST00000260810 AQRO60306 1485 aaKnown RBP eCLIP10.45□□□□□ -0.744e-6■■■■□ 23.2
TOPBP1-201ENST00000260810 ARHGAP35Q9NRY4 1499 aa10.45□□□□□ -0.74
TOPBP1-201ENST00000260810 DENND4BO75064 1496 aaPredicted RBP10.43□□□□□ -0.74
TOPBP1-201ENST00000260810 ERICH3Q5RHP9 1530 aa10.42□□□□□ -0.74
TOPBP1-201ENST00000260810 PCNTO95613 3336 aa10.4□□□□□ -0.74
TOPBP1-201ENST00000260810 MRC2Q9UBG0 1479 aa10.39□□□□□ -0.75
TOPBP1-201ENST00000260810 CEP164Q9UPV0 1460 aa10.39□□□□□ -0.75
TOPBP1-201ENST00000260810 ARHGEF11O15085 1522 aa10.38□□□□□ -0.75
TOPBP1-201ENST00000260810 CUL7Q14999 1698 aa10.34□□□□□ -0.75
TOPBP1-201ENST00000260810 KDM6BO15054 1643 aa10.33□□□□□ -0.76
TOPBP1-201ENST00000260810 PPRC1Q5VV67 1664 aaKnown RBP10.32□□□□□ -0.76
TOPBP1-201ENST00000260810 TDRD9Q8NDG6 1382 aaKnown RBP10.32□□□□□ -0.76
TOPBP1-201ENST00000260810 CFAP43Q8NDM7 1665 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms