Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.82■■■□□ 2.68
RPAP3Q9H6T3 AC044849.2-201ENST00000606596 710 ntBASIC31.81■■■□□ 2.68
RPAP3Q9H6T3 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
RPAP3Q9H6T3 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.79■■■□□ 2.68
RPAP3Q9H6T3 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.77■■■□□ 2.68
RPAP3Q9H6T3 ABHD17AP4-201ENST00000411545 909 ntBASIC31.77■■■□□ 2.68
RPAP3Q9H6T3 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
RPAP3Q9H6T3 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.75■■■□□ 2.67
RPAP3Q9H6T3 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC31.74■■■□□ 2.67
RPAP3Q9H6T3 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
RPAP3Q9H6T3 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC31.73■■■□□ 2.67
RPAP3Q9H6T3 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.72■■■□□ 2.67
RPAP3Q9H6T3 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
RPAP3Q9H6T3 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC31.71■■■□□ 2.67
RPAP3Q9H6T3 MLEC-202ENST00000412616 841 ntTSL 3 BASIC31.71■■■□□ 2.67
RPAP3Q9H6T3 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
RPAP3Q9H6T3 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
RPAP3Q9H6T3 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.68■■■□□ 2.66
RPAP3Q9H6T3 MIR7108-201ENST00000614319 87 ntBASIC31.68■■■□□ 2.66
RPAP3Q9H6T3 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC31.67■■■□□ 2.66
RPAP3Q9H6T3 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.66■■■□□ 2.66
RPAP3Q9H6T3 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
RPAP3Q9H6T3 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.64■■■□□ 2.66
RPAP3Q9H6T3 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
RPAP3Q9H6T3 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.62■■■□□ 2.65
RPAP3Q9H6T3 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.62■■■□□ 2.65
RPAP3Q9H6T3 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC31.61■■■□□ 2.65
RPAP3Q9H6T3 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP3Q9H6T3 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP3Q9H6T3 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP3Q9H6T3 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
RPAP3Q9H6T3 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC31.6■■■□□ 2.65
RPAP3Q9H6T3 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC31.6■■■□□ 2.65
RPAP3Q9H6T3 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
RPAP3Q9H6T3 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
RPAP3Q9H6T3 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC31.58■■■□□ 2.65
RPAP3Q9H6T3 BOD1-206ENST00000480951 814 ntTSL 2 BASIC31.58■■■□□ 2.65
RPAP3Q9H6T3 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.58■■■□□ 2.65
RPAP3Q9H6T3 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
RPAP3Q9H6T3 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP3Q9H6T3 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP3Q9H6T3 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC31.57■■■□□ 2.64
RPAP3Q9H6T3 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC31.56■■■□□ 2.64
RPAP3Q9H6T3 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
RPAP3Q9H6T3 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC31.56■■■□□ 2.64
RPAP3Q9H6T3 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.56■■■□□ 2.64
RPAP3Q9H6T3 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
RPAP3Q9H6T3 PVT1-219ENST00000523427 938 ntTSL 3 BASIC31.55■■■□□ 2.64
RPAP3Q9H6T3 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
RPAP3Q9H6T3 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.54■■■□□ 2.64
RPAP3Q9H6T3 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC31.52■■■□□ 2.64
RPAP3Q9H6T3 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.52■■■□□ 2.64
RPAP3Q9H6T3 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC31.51■■■□□ 2.64
RPAP3Q9H6T3 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.51■■■□□ 2.63
RPAP3Q9H6T3 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC31.51■■■□□ 2.63
RPAP3Q9H6T3 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC31.51■■■□□ 2.63
RPAP3Q9H6T3 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC31.51■■■□□ 2.63
RPAP3Q9H6T3 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC31.5■■■□□ 2.63
RPAP3Q9H6T3 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC31.5■■■□□ 2.63
RPAP3Q9H6T3 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RPAP3Q9H6T3 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
RPAP3Q9H6T3 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.48■■■□□ 2.63
RPAP3Q9H6T3 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC31.48■■■□□ 2.63
RPAP3Q9H6T3 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
RPAP3Q9H6T3 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC31.46■■■□□ 2.63
RPAP3Q9H6T3 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC31.45■■■□□ 2.63
RPAP3Q9H6T3 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.62
RPAP3Q9H6T3 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.45■■■□□ 2.62
RPAP3Q9H6T3 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
RPAP3Q9H6T3 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 ZNRF2P2-203ENST00000454624 420 ntBASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
RPAP3Q9H6T3 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.42■■■□□ 2.62
RPAP3Q9H6T3 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.42■■■□□ 2.62
RPAP3Q9H6T3 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RPAP3Q9H6T3 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RPAP3Q9H6T3 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
RPAP3Q9H6T3 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.4■■■□□ 2.62
RPAP3Q9H6T3 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
RPAP3Q9H6T3 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC31.39■■■□□ 2.62
RPAP3Q9H6T3 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
RPAP3Q9H6T3 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
RPAP3Q9H6T3 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
RPAP3Q9H6T3 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC31.35■■■□□ 2.61
RPAP3Q9H6T3 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC31.35■■■□□ 2.61
RPAP3Q9H6T3 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC31.35■■■□□ 2.61
RPAP3Q9H6T3 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC31.34■■■□□ 2.61
RPAP3Q9H6T3 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
RPAP3Q9H6T3 MBP-237ENST00000579129 1052 ntTSL 5 BASIC31.32■■■□□ 2.6
RPAP3Q9H6T3 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC31.32■■■□□ 2.6
RPAP3Q9H6T3 DUX4L29-201ENST00000425409 679 ntBASIC31.31■■■□□ 2.6
RPAP3Q9H6T3 HLA-V-202ENST00000446817 847 ntBASIC31.31■■■□□ 2.6
RPAP3Q9H6T3 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RPAP3Q9H6T3 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC31.3■■■□□ 2.6
RPAP3Q9H6T3 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC31.3■■■□□ 2.6
RPAP3Q9H6T3 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
Retrieved 100 of 98,524 protein–RNA pairs in 58.1 ms