Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.39■■□□□ 1.65
SOX3P41225 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC25.38■■□□□ 1.65
SOX3P41225 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
SOX3P41225 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.37■■□□□ 1.65
SOX3P41225 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
SOX3P41225 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
SOX3P41225 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC25.37■■□□□ 1.65
SOX3P41225 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.37■■□□□ 1.65
SOX3P41225 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC25.37■■□□□ 1.65
SOX3P41225 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC25.36■■□□□ 1.65
SOX3P41225 SUZ12P1-203ENST00000578195 985 ntBASIC25.35■■□□□ 1.65
SOX3P41225 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC25.35■■□□□ 1.65
SOX3P41225 CAHM-201ENST00000604200 896 ntBASIC25.34■■□□□ 1.65
SOX3P41225 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC25.33■■□□□ 1.65
SOX3P41225 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.33■■□□□ 1.65
SOX3P41225 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.32■■□□□ 1.64
SOX3P41225 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC25.32■■□□□ 1.64
SOX3P41225 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC25.32■■□□□ 1.64
SOX3P41225 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
SOX3P41225 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SOX3P41225 FOXD3-201ENST00000371116 2086 ntAPPRIS P1 BASIC25.31■■□□□ 1.64
SOX3P41225 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SOX3P41225 AL391121.1-201ENST00000607967 1349 ntBASIC25.29■■□□□ 1.64
SOX3P41225 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC25.29■■□□□ 1.64
SOX3P41225 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SOX3P41225 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SOX3P41225 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SOX3P41225 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SOX3P41225 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SOX3P41225 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SOX3P41225 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SOX3P41225 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.23■■□□□ 1.63
SOX3P41225 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SOX3P41225 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SOX3P41225 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
SOX3P41225 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX3P41225 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
SOX3P41225 KCNK3-202ENST00000620977 1956 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
SOX3P41225 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
SOX3P41225 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC25.2■■□□□ 1.63
SOX3P41225 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC25.2■■□□□ 1.62
SOX3P41225 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
SOX3P41225 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SOX3P41225 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.17■■□□□ 1.62
SOX3P41225 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
SOX3P41225 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC25.15■■□□□ 1.62
SOX3P41225 MEX3D-201ENST00000402693 2850 ntAPPRIS P2 TSL 1 (best) BASIC25.15■■□□□ 1.62
SOX3P41225 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
SOX3P41225 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC25.15■■□□□ 1.62
SOX3P41225 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC25.14■■□□□ 1.62
SOX3P41225 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.14■■□□□ 1.62
SOX3P41225 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
SOX3P41225 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
SOX3P41225 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
SOX3P41225 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.13■■□□□ 1.61
SOX3P41225 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SOX3P41225 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
SOX3P41225 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SOX3P41225 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC25.12■■□□□ 1.61
SOX3P41225 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
SOX3P41225 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
SOX3P41225 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
SOX3P41225 WASH5P-204ENST00000632292 975 ntBASIC25.11■■□□□ 1.61
SOX3P41225 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC25.11■■□□□ 1.61
SOX3P41225 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
SOX3P41225 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
SOX3P41225 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
SOX3P41225 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
SOX3P41225 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.06■■□□□ 1.6
SOX3P41225 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
SOX3P41225 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
SOX3P41225 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SOX3P41225 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.05■■□□□ 1.6
SOX3P41225 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
SOX3P41225 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SOX3P41225 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
SOX3P41225 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
SOX3P41225 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
SOX3P41225 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
SOX3P41225 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SOX3P41225 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
SOX3P41225 AC120057.4-201ENST00000624722 1615 ntBASIC25.01■■□□□ 1.59
SOX3P41225 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
SOX3P41225 HNRNPLP2-201ENST00000568980 1570 ntBASIC24.99■■□□□ 1.59
SOX3P41225 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC24.97■■□□□ 1.59
SOX3P41225 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC24.97■■□□□ 1.59
SOX3P41225 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC24.97■■□□□ 1.59
SOX3P41225 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC24.96■■□□□ 1.59
SOX3P41225 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC24.96■■□□□ 1.59
SOX3P41225 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SOX3P41225 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
SOX3P41225 ABCB10P1-201ENST00000614297 2181 ntBASIC24.95■■□□□ 1.58
SOX3P41225 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
SOX3P41225 DENR-202ENST00000455982 1052 ntTSL 5 BASIC24.93■■□□□ 1.58
SOX3P41225 RPS2P35-201ENST00000443417 897 ntBASIC24.92■■□□□ 1.58
SOX3P41225 AP006261.1-201ENST00000584783 668 ntBASIC24.92■■□□□ 1.58
SOX3P41225 MIR762-201ENST00000390236 83 ntBASIC24.91■■□□□ 1.58
SOX3P41225 AL162393.1-201ENST00000437852 946 ntBASIC24.91■■□□□ 1.58
SOX3P41225 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
SOX3P41225 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms