Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC29.28■■■□□ 2.28
SCN1AP35498 WASH5P-204ENST00000632292 975 ntBASIC29.27■■■□□ 2.28
SCN1AP35498 GRASP-201ENST00000293662 1933 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
SCN1AP35498 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC29.26■■■□□ 2.27
SCN1AP35498 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC29.25■■■□□ 2.27
SCN1AP35498 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC29.25■■■□□ 2.27
SCN1AP35498 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC29.25■■■□□ 2.27
SCN1AP35498 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC29.24■■■□□ 2.27
SCN1AP35498 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC29.24■■■□□ 2.27
SCN1AP35498 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC29.22■■■□□ 2.27
SCN1AP35498 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC29.21■■■□□ 2.27
SCN1AP35498 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
SCN1AP35498 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.26
SCN1AP35498 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC29.18■■■□□ 2.26
SCN1AP35498 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SCN1AP35498 DENR-202ENST00000455982 1052 ntTSL 5 BASIC29.16■■■□□ 2.26
SCN1AP35498 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC29.15■■■□□ 2.26
SCN1AP35498 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SCN1AP35498 AL162393.1-201ENST00000437852 946 ntBASIC29.15■■■□□ 2.26
SCN1AP35498 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.26
SCN1AP35498 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SCN1AP35498 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC29.13■■■□□ 2.25
SCN1AP35498 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC29.13■■■□□ 2.25
SCN1AP35498 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SCN1AP35498 RPS2P35-201ENST00000443417 897 ntBASIC29.1■■■□□ 2.25
SCN1AP35498 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SCN1AP35498 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC29.09■■■□□ 2.25
SCN1AP35498 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC29.08■■■□□ 2.25
SCN1AP35498 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SCN1AP35498 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SCN1AP35498 NRG1-221ENST00000614767 762 ntTSL 5 BASIC29.06■■■□□ 2.24
SCN1AP35498 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC29.06■■■□□ 2.24
SCN1AP35498 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC29.04■■■□□ 2.24
SCN1AP35498 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC29.03■■■□□ 2.24
SCN1AP35498 CERS1-201ENST00000429504 2094 ntTSL 1 (best) BASIC29.03■■■□□ 2.24
SCN1AP35498 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SCN1AP35498 MIR762-201ENST00000390236 83 ntBASIC29.01■■■□□ 2.24
SCN1AP35498 DUX4L28-201ENST00000623687 678 ntBASIC29.01■■■□□ 2.24
SCN1AP35498 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SCN1AP35498 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC29■■■□□ 2.23
SCN1AP35498 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SCN1AP35498 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC28.99■■■□□ 2.23
SCN1AP35498 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC28.98■■■□□ 2.23
SCN1AP35498 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SCN1AP35498 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SCN1AP35498 AC005559.1-201ENST00000589661 871 ntBASIC28.98■■■□□ 2.23
SCN1AP35498 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC28.97■■■□□ 2.23
SCN1AP35498 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SCN1AP35498 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC28.97■■■□□ 2.23
SCN1AP35498 CHML-205ENST00000638160 705 ntTSL 3 BASIC28.96■■■□□ 2.23
SCN1AP35498 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC28.95■■■□□ 2.23
SCN1AP35498 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SCN1AP35498 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SCN1AP35498 EMX1-201ENST00000258106 2188 ntAPPRIS P1 TSL 1 (best) BASIC28.94■■■□□ 2.22
SCN1AP35498 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC28.93■■■□□ 2.22
SCN1AP35498 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC28.93■■■□□ 2.22
SCN1AP35498 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC28.93■■■□□ 2.22
SCN1AP35498 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC28.93■■■□□ 2.22
SCN1AP35498 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SCN1AP35498 AP006261.1-201ENST00000584783 668 ntBASIC28.92■■■□□ 2.22
SCN1AP35498 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.92■■■□□ 2.22
SCN1AP35498 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SCN1AP35498 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC28.9■■■□□ 2.22
SCN1AP35498 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SCN1AP35498 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC28.89■■■□□ 2.22
SCN1AP35498 ZBTB7A-202ENST00000601588 2083 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SCN1AP35498 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.22
SCN1AP35498 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
SCN1AP35498 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC28.88■■■□□ 2.21
SCN1AP35498 UBP1-201ENST00000283628 2074 ntAPPRIS P3 TSL 2 BASIC28.88■■■□□ 2.21
SCN1AP35498 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
SCN1AP35498 MIR3665-201ENST00000578708 105 ntBASIC28.87■■■□□ 2.21
SCN1AP35498 GALK1-205ENST00000588479 1866 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SCN1AP35498 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC28.87■■■□□ 2.21
SCN1AP35498 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC28.87■■■□□ 2.21
SCN1AP35498 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
SCN1AP35498 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.86■■■□□ 2.21
SCN1AP35498 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC28.85■■■□□ 2.21
SCN1AP35498 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC28.83■■■□□ 2.21
SCN1AP35498 RPS2-209ENST00000529806 993 ntTSL 3 BASIC28.83■■■□□ 2.21
SCN1AP35498 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
SCN1AP35498 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC28.82■■■□□ 2.2
SCN1AP35498 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC28.82■■■□□ 2.2
SCN1AP35498 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC28.82■■■□□ 2.2
SCN1AP35498 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC28.81■■■□□ 2.2
SCN1AP35498 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
SCN1AP35498 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
SCN1AP35498 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC28.8■■■□□ 2.2
SCN1AP35498 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
SCN1AP35498 AC087741.3-201ENST00000624270 1347 ntBASIC28.79■■■□□ 2.2
SCN1AP35498 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
SCN1AP35498 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
SCN1AP35498 AC044849.2-201ENST00000606596 710 ntBASIC28.77■■■□□ 2.2
SCN1AP35498 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC28.76■■■□□ 2.2
SCN1AP35498 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC28.76■■■□□ 2.19
SCN1AP35498 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
SCN1AP35498 AL161658.1-201ENST00000623641 1967 ntBASIC28.76■■■□□ 2.19
SCN1AP35498 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC28.75■■■□□ 2.19
SCN1AP35498 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
SCN1AP35498 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.75■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 15.8 ms