Protein–RNA interactions for Protein: P09661

SNRPA1, U2 small nuclear ribonucleoprotein A', humanhuman

Known RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRPA1P09661 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC35.19■■■■□ 3.22
SNRPA1P09661 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
SNRPA1P09661 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC35.18■■■■□ 3.22
SNRPA1P09661 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC35.18■■■■□ 3.22
SNRPA1P09661 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC35.16■■■■□ 3.22
SNRPA1P09661 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC35.15■■■■□ 3.22
SNRPA1P09661 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC35.15■■■■□ 3.22
SNRPA1P09661 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC35.14■■■■□ 3.22
SNRPA1P09661 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC35.13■■■■□ 3.21
SNRPA1P09661 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC35.13■■■■□ 3.21
SNRPA1P09661 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC35.13■■■■□ 3.21
SNRPA1P09661 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC35.12■■■■□ 3.21
SNRPA1P09661 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC35.11■■■■□ 3.21
SNRPA1P09661 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC35.11■■■■□ 3.21
SNRPA1P09661 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC35.11■■■■□ 3.21
SNRPA1P09661 AC044849.2-201ENST00000606596 710 ntBASIC35.09■■■■□ 3.21
SNRPA1P09661 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC35.08■■■■□ 3.21
SNRPA1P09661 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC35.08■■■■□ 3.21
SNRPA1P09661 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC35.08■■■■□ 3.21
SNRPA1P09661 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC35.08■■■■□ 3.21
SNRPA1P09661 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC35.07■■■■□ 3.2
SNRPA1P09661 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC35.06■■■■□ 3.2
SNRPA1P09661 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC35.06■■■■□ 3.2
SNRPA1P09661 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SNRPA1P09661 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC35.05■■■■□ 3.2
SNRPA1P09661 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC35.05■■■■□ 3.2
SNRPA1P09661 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC35.04■■■■□ 3.2
SNRPA1P09661 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC35.04■■■■□ 3.2
SNRPA1P09661 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC35.04■■■■□ 3.2
SNRPA1P09661 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC35.03■■■■□ 3.2
SNRPA1P09661 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC35.02■■■■□ 3.2
SNRPA1P09661 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC35.02■■■■□ 3.2
SNRPA1P09661 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC35.01■■■■□ 3.19
SNRPA1P09661 ACTR3B-202ENST00000377776 1566 ntTSL 1 (best) BASIC35■■■■□ 3.19
SNRPA1P09661 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC35■■■■□ 3.19
SNRPA1P09661 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC35■■■■□ 3.19
SNRPA1P09661 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC35■■■■□ 3.19
SNRPA1P09661 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC34.99■■■■□ 3.19
SNRPA1P09661 ABHD17AP4-201ENST00000411545 909 ntBASIC34.98■■■■□ 3.19
SNRPA1P09661 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC34.97■■■■□ 3.19
SNRPA1P09661 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC34.97■■■■□ 3.19
SNRPA1P09661 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
SNRPA1P09661 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC34.96■■■■□ 3.19
SNRPA1P09661 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC34.95■■■■□ 3.19
SNRPA1P09661 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC34.94■■■■□ 3.18
SNRPA1P09661 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC34.94■■■■□ 3.18
SNRPA1P09661 MLEC-202ENST00000412616 841 ntTSL 3 BASIC34.94■■■■□ 3.18
SNRPA1P09661 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC34.93■■■■□ 3.18
SNRPA1P09661 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
SNRPA1P09661 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC34.92■■■■□ 3.18
SNRPA1P09661 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC34.92■■■■□ 3.18
SNRPA1P09661 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC34.9■■■■□ 3.18
SNRPA1P09661 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC34.9■■■■□ 3.18
SNRPA1P09661 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC34.89■■■■□ 3.18
SNRPA1P09661 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SNRPA1P09661 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC34.87■■■■□ 3.17
SNRPA1P09661 RPS2-209ENST00000529806 993 ntTSL 3 BASIC34.87■■■■□ 3.17
SNRPA1P09661 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC34.87■■■■□ 3.17
SNRPA1P09661 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC34.86■■■■□ 3.17
SNRPA1P09661 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC34.84■■■■□ 3.17
SNRPA1P09661 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC34.84■■■■□ 3.17
SNRPA1P09661 BOD1-206ENST00000480951 814 ntTSL 2 BASIC34.84■■■■□ 3.17
SNRPA1P09661 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC34.82■■■■□ 3.17
SNRPA1P09661 MIR7108-201ENST00000614319 87 ntBASIC34.82■■■■□ 3.16
SNRPA1P09661 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC34.81■■■■□ 3.16
SNRPA1P09661 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC34.81■■■■□ 3.16
SNRPA1P09661 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC34.81■■■■□ 3.16
SNRPA1P09661 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC34.8■■■■□ 3.16
SNRPA1P09661 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC34.8■■■■□ 3.16
SNRPA1P09661 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC34.79■■■■□ 3.16
SNRPA1P09661 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC34.79■■■■□ 3.16
SNRPA1P09661 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC34.79■■■■□ 3.16
SNRPA1P09661 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC34.76■■■■□ 3.16
SNRPA1P09661 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
SNRPA1P09661 FMR1-219ENST00000621453 1864 ntTSL 1 (best) BASIC34.75■■■■□ 3.15
SNRPA1P09661 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC34.74■■■■□ 3.15
SNRPA1P09661 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC34.74■■■■□ 3.15
SNRPA1P09661 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC34.73■■■■□ 3.15
SNRPA1P09661 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC34.73■■■■□ 3.15
SNRPA1P09661 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC34.73■■■■□ 3.15
SNRPA1P09661 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC34.72■■■■□ 3.15
SNRPA1P09661 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC34.72■■■■□ 3.15
SNRPA1P09661 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC34.72■■■■□ 3.15
SNRPA1P09661 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC34.72■■■■□ 3.15
SNRPA1P09661 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC34.71■■■■□ 3.15
SNRPA1P09661 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC34.71■■■■□ 3.15
SNRPA1P09661 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC34.7■■■■□ 3.15
SNRPA1P09661 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC34.69■■■■□ 3.14
SNRPA1P09661 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
SNRPA1P09661 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC34.68■■■■□ 3.14
SNRPA1P09661 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC34.67■■■■□ 3.14
SNRPA1P09661 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC34.66■■■■□ 3.14
SNRPA1P09661 PVT1-219ENST00000523427 938 ntTSL 3 BASIC34.65■■■■□ 3.14
SNRPA1P09661 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC34.65■■■■□ 3.14
SNRPA1P09661 MTCP1-202ENST00000369476 2274 ntAPPRIS P1 TSL 3 BASIC34.65■■■■□ 3.14
SNRPA1P09661 ZNRF2P2-203ENST00000454624 420 ntBASIC34.64■■■■□ 3.14
SNRPA1P09661 HGH1-207ENST00000628266 258 ntTSL 5 BASIC34.64■■■■□ 3.14
SNRPA1P09661 AC120057.4-201ENST00000624722 1615 ntBASIC34.63■■■■□ 3.13
SNRPA1P09661 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC34.63■■■■□ 3.13
SNRPA1P09661 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC34.63■■■■□ 3.13
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms