Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CHMP1AQ9HD42 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 USF2-207ENST00000595068 1612 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 ARF1-213ENST00000540651 1972 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC18.8■□□□□ 0.6
CHMP1AQ9HD42 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 AC242852.2-201ENST00000615738 1807 ntBASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC18.79■□□□□ 0.6
CHMP1AQ9HD42 SLC25A24-204ENST00000569674 2357 ntBASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 GUK1-208ENST00000366728 842 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CHMP1AQ9HD42 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CHMP1AQ9HD42 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CHMP1AQ9HD42 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 AL353803.4-201ENST00000565882 1934 ntBASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 ESRRAP2-201ENST00000418437 1549 ntBASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
CHMP1AQ9HD42 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 YBX1P4-201ENST00000392794 808 ntBASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 AC012354.3-201ENST00000623734 483 ntBASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.75■□□□□ 0.59
CHMP1AQ9HD42 UROS-204ENST00000368797 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 KRT8P33-201ENST00000508125 1423 ntBASIC18.74■□□□□ 0.59
CHMP1AQ9HD42 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms