Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 PLIN3-207ENST00000592528 2154 ntTSL 2 BASIC12.57□□□□□ -0.4
RFC3P40938 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
RFC3P40938 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 LINC01833-203ENST00000437916 2880 ntTSL 3 BASIC12.57□□□□□ -0.4
RFC3P40938 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.57□□□□□ -0.4
RFC3P40938 PDE4A-209ENST00000592685 2707 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 MC5R-201ENST00000324750 1319 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
RFC3P40938 METTL6-202ENST00000383790 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 AC020763.3-201ENST00000625095 2904 ntBASIC12.57□□□□□ -0.4
RFC3P40938 TGFBR3-201ENST00000212355 6465 ntAPPRIS P3 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 AC134312.1-201ENST00000378417 3468 ntTSL 2 BASIC12.57□□□□□ -0.4
RFC3P40938 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC12.57□□□□□ -0.4
RFC3P40938 GRHL1-202ENST00000405379 1881 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 OXSM-201ENST00000280701 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 SGTB-201ENST00000381007 5469 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 ELAVL1-201ENST00000407627 6015 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 TARDBP-201ENST00000240185 5367 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
RFC3P40938 TVP23C-CDRT4-203ENST00000522212 2833 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
RFC3P40938 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A21P-201ENST00000510875 1396 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A15P-201ENST00000514465 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A6P-201ENST00000515148 1394 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A16P-201ENST00000526662 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A9P-201ENST00000527940 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A5P-201ENST00000528738 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A14P-201ENST00000530386 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 FAM90A13P-201ENST00000534703 1395 ntBASIC12.56□□□□□ -0.4
RFC3P40938 RFFL-201ENST00000315249 7293 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 NFE2L2-202ENST00000397063 2651 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 IFT88-202ENST00000351808 2856 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 CETP-201ENST00000200676 1791 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 UMODL1-204ENST00000400427 5442 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 CELF4-201ENST00000334919 3542 ntAPPRIS ALT1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 AC106707.1-201ENST00000475981 1640 ntTSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 AC106818.1-201ENST00000623223 3242 ntBASIC12.56□□□□□ -0.4
RFC3P40938 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 GTF3C6-201ENST00000329970 952 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 TRBV4-1-201ENST00000390357 373 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
RFC3P40938 TRBV4-2-201ENST00000390392 455 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
RFC3P40938 ABCD1P4-201ENST00000399687 604 ntBASIC12.56□□□□□ -0.4
RFC3P40938 DKKL1P1-201ENST00000400550 698 ntBASIC12.56□□□□□ -0.4
RFC3P40938 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC12.56□□□□□ -0.4
RFC3P40938 AQP7P5-201ENST00000428759 1049 ntBASIC12.56□□□□□ -0.4
RFC3P40938 LINC02557-201ENST00000432249 477 ntTSL 3 BASIC12.56□□□□□ -0.4
RFC3P40938 AP001057.1-201ENST00000437557 799 ntTSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 AQP7P4-201ENST00000447083 1042 ntBASIC12.56□□□□□ -0.4
RFC3P40938 RPL9-203ENST00000449470 1127 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 AQP7P2-201ENST00000453967 1041 ntBASIC12.56□□□□□ -0.4
RFC3P40938 RN7SL494P-201ENST00000461517 304 ntBASIC12.56□□□□□ -0.4
RFC3P40938 RN7SL582P-201ENST00000491078 279 ntBASIC12.56□□□□□ -0.4
RFC3P40938 AC090152.1-203ENST00000517898 1106 ntTSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 CD44-224ENST00000526669 870 ntTSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 MT2A-202ENST00000561491 581 ntTSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 APOC4-202ENST00000592954 615 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 APOBEC3H-207ENST00000613996 465 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
RFC3P40938 ADAMTSL4-AS1-203ENST00000617352 1036 ntTSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 AQP7P3-201ENST00000624547 1041 ntBASIC12.56□□□□□ -0.4
RFC3P40938 PFDN5-220ENST00000628881 231 ntTSL 3 BASIC12.56□□□□□ -0.4
RFC3P40938 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 LIMS4-204ENST00000632897 1460 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 LHFPL1-201ENST00000371968 1675 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 GIT2-201ENST00000320063 2094 ntTSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 NACC2-202ENST00000371753 6802 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 GPR68-204ENST00000535815 2859 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 WIZ-202ENST00000389282 4067 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 ADAMTSL4-203ENST00000369039 4319 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 ENDOV-206ENST00000518901 2549 ntTSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 CCDC186-202ENST00000369286 1928 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 PARP3-203ENST00000431474 2360 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 PCMTD2-204ENST00000369758 3212 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 MOB3C-203ENST00000371940 5725 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 DNM2-204ENST00000408974 3013 ntAPPRIS ALT1 TSL 2 BASIC12.56□□□□□ -0.4
RFC3P40938 GDF9-201ENST00000296875 1796 ntTSL 5 BASIC12.56□□□□□ -0.4
RFC3P40938 NRADDP-202ENST00000641269 1585 ntBASIC12.56□□□□□ -0.4
RFC3P40938 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 SSTR3-201ENST00000610913 4100 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
RFC3P40938 SLC1A1-201ENST00000262352 3722 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RFC3P40938 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
RFC3P40938 ZNF829-201ENST00000391711 1805 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
RFC3P40938 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
RFC3P40938 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC12.55□□□□□ -0.4
RFC3P40938 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC12.55□□□□□ -0.4
RFC3P40938 SMTN-203ENST00000358743 3198 ntAPPRIS P4 TSL 2 BASIC12.55□□□□□ -0.4
RFC3P40938 BCL2L12-211ENST00000614495 1402 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 62.1 ms