RNA–Protein interactions for RNA: ENST00000612286.4

HOXA3-207, Transcript of homeobox A3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HOXA3, Length 3,396 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3-207ENST00000612286 NISCHQ9Y2I1 1504 aa26.64■■□□□ 1.86
HOXA3-207ENST00000612286 SHROOM4Q9ULL8 1493 aa24.69■■□□□ 1.54
HOXA3-207ENST00000612286 SUPT5HO00267 1087 aaKnown RBP24.5■■□□□ 1.51
HOXA3-207ENST00000612286 DCAF8L2P0C7V8 631 aa23.94■■□□□ 1.42
HOXA3-207ENST00000612286 PCGF6Q9BYE7 350 aa23.74■■□□□ 1.39
HOXA3-207ENST00000612286 PPARGC1BQ86YN6 1023 aaKnown RBP23.66■■□□□ 1.38
HOXA3-207ENST00000612286 HRCP23327 699 aa23.45■■□□□ 1.34
HOXA3-207ENST00000612286 CHIC1Q5VXU3 224 aa23.32■■□□□ 1.32
HOXA3-207ENST00000612286 MYO15BQ96JP2 1530 aa23.28■■□□□ 1.32
HOXA3-207ENST00000612286 EHMT2Q96KQ7 1210 aa23.27■■□□□ 1.32
HOXA3-207ENST00000612286 LOC105371045A0A1W2PR82 267 aa23.26■■□□□ 1.31
HOXA3-207ENST00000612286 FAM9AQ8IZU1 332 aaPredicted RBP22.89■■□□□ 1.25
HOXA3-207ENST00000612286 TTBK1Q5TCY1 1321 aaPredicted RBP22.52■■□□□ 1.2
HOXA3-207ENST00000612286 TRIM26Q12899 539 aaPredicted RBP22.5■■□□□ 1.19
HOXA3-207ENST00000612286 ZCCHC6Q5VYS8 1495 aaKnown RBP22.48■■□□□ 1.19
HOXA3-207ENST00000612286 TRIM41Q8WV44 630 aa22.33■■□□□ 1.16
HOXA3-207ENST00000612286 SCAF1Q9H7N4 1312 aaKnown RBP22.21■■□□□ 1.15
HOXA3-207ENST00000612286 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.15■■□□□ 1.14
HOXA3-207ENST00000612286 DCAF1Q9Y4B6 1507 aa22.15■■□□□ 1.14
HOXA3-207ENST00000612286 CCER1Q8TC90 406 aaPredicted RBP22.01■■□□□ 1.11
HOXA3-207ENST00000612286 ZEB1P37275 1124 aaPredicted RBP21.96■■□□□ 1.11
HOXA3-207ENST00000612286 YTHDC1Q96MU7 727 aaKnown RBP21.9■■□□□ 1.1
HOXA3-207ENST00000612286 NEUROD1Q13562 356 aa21.83■■□□□ 1.08
HOXA3-207ENST00000612286 CCDC180Q9P1Z9 1646 aa21.8■■□□□ 1.08
HOXA3-207ENST00000612286 PELP1Q8IZL8 1130 aaKnown RBP21.79■■□□□ 1.08
HOXA3-207ENST00000612286 GTF3C3Q9Y5Q9 886 aa21.76■■□□□ 1.07
HOXA3-207ENST00000612286 DIEXFQ68CQ4 756 aaKnown RBP21.66■■□□□ 1.06
HOXA3-207ENST00000612286 RANGAP1P46060 587 aaPredicted RBP21.65■■□□□ 1.06
HOXA3-207ENST00000612286 ACIN1Q9UKV3 1341 aaKnown RBP21.64■■□□□ 1.05
HOXA3-207ENST00000612286 SCRIBQ14160 1630 aa21.59■■□□□ 1.05
HOXA3-207ENST00000612286 RSF1Q96T23 1441 aaPredicted RBP21.58■■□□□ 1.04
HOXA3-207ENST00000612286 CENPBP07199 599 aaPredicted RBP21.49■■□□□ 1.03
HOXA3-207ENST00000612286 RB1CC1Q8TDY2 1594 aa21.48■■□□□ 1.03
HOXA3-207ENST00000612286 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
HOXA3-207ENST00000612286 UBTFP17480 764 aaKnown RBP21.44■■□□□ 1.02
HOXA3-207ENST00000612286 CECR2Q9BXF3 1484 aa21.3■■□□□ 1
HOXA3-207ENST00000612286 ABCC9O60706 1549 aa21.26■□□□□ 0.99
HOXA3-207ENST00000612286 MIER1Q8N108 512 aa21.2■□□□□ 0.98
HOXA3-207ENST00000612286 ZNF316A6NFI3 1004 aaPredicted RBP21.14■□□□□ 0.97
HOXA3-207ENST00000612286 MROH2BQ7Z745 1585 aa21.06■□□□□ 0.96
HOXA3-207ENST00000612286 ABCC8Q09428 1581 aa20.99■□□□□ 0.95
HOXA3-207ENST00000612286 SOGA1O94964 1423 aa20.97■□□□□ 0.95
HOXA3-207ENST00000612286 ITGAEP38570 1179 aa20.96■□□□□ 0.95
HOXA3-207ENST00000612286 APLP2Q06481 763 aa20.96■□□□□ 0.95
HOXA3-207ENST00000612286 WIZO95785 1651 aa20.95■□□□□ 0.94
HOXA3-207ENST00000612286 CEP162Q5TB80 1403 aa20.95■□□□□ 0.94
HOXA3-207ENST00000612286 CCDC88BA6NC98 1476 aa20.94■□□□□ 0.94
HOXA3-207ENST00000612286 PABPN1Q86U42 306 aaKnown RBP eCLIP20.91■□□□□ 0.94
HOXA3-207ENST00000612286 CSRNP3Q8WYN3 585 aa20.91■□□□□ 0.94
HOXA3-207ENST00000612286 BCANQ96GW7 911 aa20.87■□□□□ 0.93
HOXA3-207ENST00000612286 RUSC2Q8N2Y8 1516 aa20.87■□□□□ 0.93
HOXA3-207ENST00000612286 MYT1Q01538 1121 aa20.81■□□□□ 0.92
HOXA3-207ENST00000612286 KCNH8Q96L42 1107 aa20.64■□□□□ 0.89
HOXA3-207ENST00000612286 HIRIP3Q9BW71 556 aaPredicted RBP20.6■□□□□ 0.89
HOXA3-207ENST00000612286 TNIKQ9UKE5 1360 aa20.59■□□□□ 0.89
HOXA3-207ENST00000612286 SUPT16HQ9Y5B9 1047 aaKnown RBP20.56■□□□□ 0.88
HOXA3-207ENST00000612286 ATP1B4Q9UN42 357 aaPredicted RBP20.55■□□□□ 0.88
HOXA3-207ENST00000612286 CLIP1P30622 1438 aa20.5■□□□□ 0.87
HOXA3-207ENST00000612286 WRNQ14191 1432 aaPredicted RBP eCLIP20.47■□□□□ 0.87
HOXA3-207ENST00000612286 KANK4Q5T7N3 995 aaPredicted RBP20.45■□□□□ 0.86
HOXA3-207ENST00000612286 GOLGA3Q08378 1498 aa20.42■□□□□ 0.86
HOXA3-207ENST00000612286 DDX10Q13206 875 aaKnown RBP20.4■□□□□ 0.86
HOXA3-207ENST00000612286 FKBP8Q14318 412 aa20.39■□□□□ 0.86
HOXA3-207ENST00000612286 TRIM52Q96A61 297 aa20.38■□□□□ 0.85
HOXA3-207ENST00000612286 BAZ1AQ9NRL2 1556 aaPredicted RBP20.38■□□□□ 0.85
HOXA3-207ENST00000612286 TSHZ2Q9NRE2 1034 aa20.36■□□□□ 0.85
HOXA3-207ENST00000612286 P3H3Q8IVL6 736 aa20.31■□□□□ 0.84
HOXA3-207ENST00000612286 EIF4G1Q04637 1599 aaKnown RBP20.31■□□□□ 0.84
HOXA3-207ENST00000612286 NACADO15069 1562 aa20.29■□□□□ 0.84
HOXA3-207ENST00000612286 FAM50AQ14320 339 aaKnown RBP20.29■□□□□ 0.84
HOXA3-207ENST00000612286 RAPGEF2Q9Y4G8 1499 aa20.29■□□□□ 0.84
HOXA3-207ENST00000612286 CNGB1Q14028 1251 aaPredicted RBP20.28■□□□□ 0.84
HOXA3-207ENST00000612286 SIN3AQ96ST3 1273 aa20.28■□□□□ 0.84
HOXA3-207ENST00000612286 IRX6P78412 446 aaPredicted RBP20.27■□□□□ 0.84
HOXA3-207ENST00000612286 SMARCA2P51531 1590 aa20.26■□□□□ 0.83
HOXA3-207ENST00000612286 TOP2AP11388 1531 aaKnown RBP20.23■□□□□ 0.83
HOXA3-207ENST00000612286 DHX57Q6P158 1386 aaKnown RBP20.22■□□□□ 0.83
HOXA3-207ENST00000612286 VPS8Q8N3P4 1428 aa20.21■□□□□ 0.83
HOXA3-207ENST00000612286 CEP164Q9UPV0 1460 aa20.18■□□□□ 0.82
HOXA3-207ENST00000612286 NEFLP07196 543 aa20.16■□□□□ 0.82
HOXA3-207ENST00000612286 EEA1Q15075 1411 aa20.15■□□□□ 0.82
HOXA3-207ENST00000612286 ANP32EQ9BTT0 268 aa20.14■□□□□ 0.82
HOXA3-207ENST00000612286 SMARCA4P51532 1647 aa20.13■□□□□ 0.81
HOXA3-207ENST00000612286 SENP3-EIF4A1A0A087X0R7 540 aa20.12■□□□□ 0.81
HOXA3-207ENST00000612286 SYNJ1O43426 1573 aa20.07■□□□□ 0.8
HOXA3-207ENST00000612286 BCL11AQ9H165 835 aa20.02■□□□□ 0.8
HOXA3-207ENST00000612286 KIF21BO75037 1637 aa20■□□□□ 0.79
HOXA3-207ENST00000612286 RBM19Q9Y4C8 960 aaKnown RBP19.98■□□□□ 0.79
HOXA3-207ENST00000612286 RAB3GAP2Q9H2M9 1393 aa19.95■□□□□ 0.78
HOXA3-207ENST00000612286 ANP32CO43423 234 aa19.95■□□□□ 0.78
HOXA3-207ENST00000612286 ERICH6Q7L0X2 663 aa19.94■□□□□ 0.78
HOXA3-207ENST00000612286 CCNB3Q8WWL7 1395 aa19.93■□□□□ 0.78
HOXA3-207ENST00000612286 HNRNPUQ00839 825 aaKnown RBP eCLIP19.92■□□□□ 0.783e-10■■■□□ 17.9
HOXA3-207ENST00000612286 ARID3CA6NKF2 412 aa19.91■□□□□ 0.78
HOXA3-207ENST00000612286 CLSPNQ9HAW4 1339 aa19.88■□□□□ 0.77
HOXA3-207ENST00000612286 ARAP1Q96P48 1450 aa19.88■□□□□ 0.77
HOXA3-207ENST00000612286 POLR3GLQ9BT43 218 aa19.87■□□□□ 0.77
HOXA3-207ENST00000612286 BAZ1BQ9UIG0 1483 aaKnown RBP19.84■□□□□ 0.77
HOXA3-207ENST00000612286 CHIC2Q9UKJ5 165 aa19.79■□□□□ 0.76
HOXA3-207ENST00000612286 FAM9BQ8IZU0 186 aa19.78■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms