RNA–Protein interactions for RNA: ENST00000212355.8

TGFBR3-201, Transcript of transforming growth factor beta receptor 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene TGFBR3, Length 6,465 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TGFBR3-201ENST00000212355 DCAF8L2P0C7V8 631 aa23.9■■□□□ 1.42
TGFBR3-201ENST00000212355 SUPT5HO00267 1087 aaKnown RBP22.78■■□□□ 1.24
TGFBR3-201ENST00000212355 EHMT2Q96KQ7 1210 aa22.77■■□□□ 1.24
TGFBR3-201ENST00000212355 SHROOM4Q9ULL8 1493 aa22.45■■□□□ 1.18
TGFBR3-201ENST00000212355 TTBK1Q5TCY1 1321 aaPredicted RBP21.95■■□□□ 1.1
TGFBR3-201ENST00000212355 FAM9AQ8IZU1 332 aaPredicted RBP21.69■■□□□ 1.06
TGFBR3-201ENST00000212355 NISCHQ9Y2I1 1504 aa21.52■■□□□ 1.04
TGFBR3-201ENST00000212355 PCGF6Q9BYE7 350 aa21.51■■□□□ 1.03
TGFBR3-201ENST00000212355 RANGAP1P46060 587 aaPredicted RBP21.49■■□□□ 1.03
TGFBR3-201ENST00000212355 PELP1Q8IZL8 1130 aaKnown RBP21.32■■□□□ 1
TGFBR3-201ENST00000212355 APLP2Q06481 763 aa21.28■■□□□ 1
TGFBR3-201ENST00000212355 PPARGC1BQ86YN6 1023 aaKnown RBP21.05■□□□□ 0.96
TGFBR3-201ENST00000212355 YTHDC1Q96MU7 727 aaKnown RBP21.05■□□□□ 0.96
TGFBR3-201ENST00000212355 ATP1B4Q9UN42 357 aaPredicted RBP21.02■□□□□ 0.96
TGFBR3-201ENST00000212355 CCER1Q8TC90 406 aaPredicted RBP20.95■□□□□ 0.94
TGFBR3-201ENST00000212355 ERICH6Q7L0X2 663 aa20.94■□□□□ 0.94
TGFBR3-201ENST00000212355 CENPBP07199 599 aaPredicted RBP20.74■□□□□ 0.91
TGFBR3-201ENST00000212355 TRIM41Q8WV44 630 aa20.74■□□□□ 0.91
TGFBR3-201ENST00000212355 UBTFP17480 764 aaKnown RBP20.63■□□□□ 0.89
TGFBR3-201ENST00000212355 CNGB1Q14028 1251 aaPredicted RBP20.5■□□□□ 0.87
TGFBR3-201ENST00000212355 MYT1Q01538 1121 aa20.49■□□□□ 0.87
TGFBR3-201ENST00000212355 ZEB1P37275 1124 aaPredicted RBP20.43■□□□□ 0.86
TGFBR3-201ENST00000212355 ITGAEP38570 1179 aa20.41■□□□□ 0.86
TGFBR3-201ENST00000212355 NEFLP07196 543 aa20.37■□□□□ 0.85
TGFBR3-201ENST00000212355 POLR3GLQ9BT43 218 aa20.36■□□□□ 0.85
TGFBR3-201ENST00000212355 LOC105371045A0A1W2PR82 267 aa20.31■□□□□ 0.84
TGFBR3-201ENST00000212355 CHIC1Q5VXU3 224 aa20.17■□□□□ 0.82
TGFBR3-201ENST00000212355 HNRNPUL2Q1KMD3 747 aaKnown RBP20.14■□□□□ 0.81
TGFBR3-201ENST00000212355 HRCP23327 699 aa20.13■□□□□ 0.81
TGFBR3-201ENST00000212355 TRIM26Q12899 539 aaPredicted RBP20.09■□□□□ 0.81
TGFBR3-201ENST00000212355 MYT1LQ9UL68 1186 aa20.05■□□□□ 0.8
TGFBR3-201ENST00000212355 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.02■□□□□ 0.8
TGFBR3-201ENST00000212355 DAXXQ9UER7 740 aaPredicted RBP19.88■□□□□ 0.77
TGFBR3-201ENST00000212355 SLC4A1APQ9BWU0 796 aaKnown RBP19.86■□□□□ 0.77
TGFBR3-201ENST00000212355 BCANQ96GW7 911 aa19.82■□□□□ 0.76
TGFBR3-201ENST00000212355 DIEXFQ68CQ4 756 aaKnown RBP19.7■□□□□ 0.74
TGFBR3-201ENST00000212355 NEUROD1Q13562 356 aa19.65■□□□□ 0.74
TGFBR3-201ENST00000212355 FAM50AQ14320 339 aaKnown RBP19.6■□□□□ 0.73
TGFBR3-201ENST00000212355 BCL11AQ9H165 835 aa19.6■□□□□ 0.73
TGFBR3-201ENST00000212355 CLSPNQ9HAW4 1339 aa19.57■□□□□ 0.72
TGFBR3-201ENST00000212355 GTF3C3Q9Y5Q9 886 aa19.53■□□□□ 0.72
TGFBR3-201ENST00000212355 ZNF316A6NFI3 1004 aaPredicted RBP19.51■□□□□ 0.71
TGFBR3-201ENST00000212355 ZNF326Q5BKZ1 582 aaKnown RBP19.47■□□□□ 0.71
TGFBR3-201ENST00000212355 TRIM52Q96A61 297 aa19.47■□□□□ 0.71
TGFBR3-201ENST00000212355 RTL5Q5HYW3 569 aaPredicted RBP19.42■□□□□ 0.7
TGFBR3-201ENST00000212355 ARID3CA6NKF2 412 aa19.36■□□□□ 0.69
TGFBR3-201ENST00000212355 PABPN1Q86U42 306 aaKnown RBP eCLIP19.34■□□□□ 0.69
TGFBR3-201ENST00000212355 SLC24A1O60721 1099 aa19.25■□□□□ 0.67
TGFBR3-201ENST00000212355 P3H3Q8IVL6 736 aa19.21■□□□□ 0.67
TGFBR3-201ENST00000212355 NPM2Q86SE8 214 aaKnown RBP19.15■□□□□ 0.66
TGFBR3-201ENST00000212355 FBLN2P98095 1184 aa19.14■□□□□ 0.65
TGFBR3-201ENST00000212355 ANP32CO43423 234 aa19.14■□□□□ 0.65
TGFBR3-201ENST00000212355 CDK11AQ9UQ88 783 aaPredicted RBP19.1■□□□□ 0.65
TGFBR3-201ENST00000212355 CANXP27824 592 aaKnown RBP19.03■□□□□ 0.64
TGFBR3-201ENST00000212355 ABCC9O60706 1549 aa19.01■□□□□ 0.63
TGFBR3-201ENST00000212355 SALL2Q9Y467 1007 aaPredicted RBP18.97■□□□□ 0.63
TGFBR3-201ENST00000212355 ACIN1Q9UKV3 1341 aaKnown RBP18.97■□□□□ 0.63
TGFBR3-201ENST00000212355 PLPPR3Q6T4P5 718 aa18.95■□□□□ 0.62
TGFBR3-201ENST00000212355 ZNF777Q9ULD5 760 aaPredicted RBP18.94■□□□□ 0.62
TGFBR3-201ENST00000212355 FKBP8Q14318 412 aa18.92■□□□□ 0.62
TGFBR3-201ENST00000212355 ZBTB47Q9UFB7 747 aaPredicted RBP18.9■□□□□ 0.62
TGFBR3-201ENST00000212355 ARXQ96QS3 562 aa18.86■□□□□ 0.61
TGFBR3-201ENST00000212355 SENP3Q9H4L4 574 aaPredicted RBP18.85■□□□□ 0.61
TGFBR3-201ENST00000212355 SENP3-EIF4A1A0A087X0R7 540 aa18.83■□□□□ 0.61
TGFBR3-201ENST00000212355 EIF5BO60841 1220 aaKnown RBP18.83■□□□□ 0.61
TGFBR3-201ENST00000212355 IRX6P78412 446 aaPredicted RBP18.81■□□□□ 0.6
TGFBR3-201ENST00000212355 NBR1Q14596 966 aa18.81■□□□□ 0.6
TGFBR3-201ENST00000212355 FAM9BQ8IZU0 186 aa18.81■□□□□ 0.6
TGFBR3-201ENST00000212355 HIRIP3Q9BW71 556 aaPredicted RBP18.8■□□□□ 0.6
TGFBR3-201ENST00000212355 DDX10Q13206 875 aaKnown RBP18.77■□□□□ 0.6
TGFBR3-201ENST00000212355 ANP32AP39687 249 aaKnown RBP18.76■□□□□ 0.59
TGFBR3-201ENST00000212355 HNRNPUQ00839 825 aaKnown RBP eCLIP18.72■□□□□ 0.595e-6■□□□□ 10.8
TGFBR3-201ENST00000212355 CHGAP10645 457 aaKnown RBP18.7■□□□□ 0.58
TGFBR3-201ENST00000212355 CHIC2Q9UKJ5 165 aa18.66■□□□□ 0.58
TGFBR3-201ENST00000212355 PLEKHG5O94827 1062 aa18.62■□□□□ 0.57
TGFBR3-201ENST00000212355 SCAF1Q9H7N4 1312 aaKnown RBP18.61■□□□□ 0.57
TGFBR3-201ENST00000212355 NEFMP07197 916 aa18.59■□□□□ 0.57
TGFBR3-201ENST00000212355 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.58■□□□□ 0.566e-8■■□□□ 12.3
TGFBR3-201ENST00000212355 CSRNP3Q8WYN3 585 aa18.58■□□□□ 0.56
TGFBR3-201ENST00000212355 HSP90AA1P07900 732 aaKnown RBP18.57■□□□□ 0.56
TGFBR3-201ENST00000212355 KDM2AQ9Y2K7 1162 aa18.55■□□□□ 0.56
TGFBR3-201ENST00000212355 MIER1Q8N108 512 aa18.53■□□□□ 0.56
TGFBR3-201ENST00000212355 TONSLQ96HA7 1378 aa18.51■□□□□ 0.55
TGFBR3-201ENST00000212355 STAG3Q9UJ98 1225 aa18.45■□□□□ 0.54
TGFBR3-201ENST00000212355 CCDC136Q96JN2 1154 aa18.45■□□□□ 0.54
TGFBR3-201ENST00000212355 SCRIBQ14160 1630 aa18.44■□□□□ 0.54
TGFBR3-201ENST00000212355 TPRNQ4KMQ1 711 aa18.4■□□□□ 0.54
TGFBR3-201ENST00000212355 TMC1Q8TDI8 760 aa18.4■□□□□ 0.54
TGFBR3-201ENST00000212355 ZBTB7CA1YPR0 619 aa18.38■□□□□ 0.53
TGFBR3-201ENST00000212355 MRS2Q9HD23 443 aa18.37■□□□□ 0.53
TGFBR3-201ENST00000212355 ANP32BQ92688 251 aaKnown RBP18.35■□□□□ 0.53
TGFBR3-201ENST00000212355 A0A0G2JS52 829 aa18.34■□□□□ 0.53
TGFBR3-201ENST00000212355 UPF2Q9HAU5 1272 aaKnown RBP18.31■□□□□ 0.52
TGFBR3-201ENST00000212355 ESF1Q9H501 851 aaKnown RBP18.3■□□□□ 0.52
TGFBR3-201ENST00000212355 MYO15BQ96JP2 1530 aa18.3■□□□□ 0.52
TGFBR3-201ENST00000212355 RRP7BPQ9NSQ0 103 aa18.3■□□□□ 0.52
TGFBR3-201ENST00000212355 WDR43Q15061 677 aaKnown RBP eCLIP18.28■□□□□ 0.52
TGFBR3-201ENST00000212355 RTN4Q9NQC3 1192 aaKnown RBP18.26■□□□□ 0.51
TGFBR3-201ENST00000212355 RGL3Q3MIN7 710 aa18.19■□□□□ 0.5
TGFBR3-201ENST00000212355 TAOK2Q9UL54 1235 aa18.18■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms