Protein–RNA interactions for Protein: P68431

HIST1H3A, Histone H3.1, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIST1H3AP68431 TSPAN31-201ENST00000257910 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.14□□□□□ -0.47
HIST1H3AP68431 AC007666.1-201ENST00000443935 1838 ntTSL 5 BASIC12.14□□□□□ -0.47
HIST1H3AP68431 ZNF426-204ENST00000593003 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SIRPA-202ENST00000358771 3996 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 BCAN-201ENST00000329117 3466 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AGO3-201ENST00000246314 3211 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PCDHGA11-201ENST00000398587 4647 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 STXBP1-201ENST00000373299 3765 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SPECC1L-ADORA2A-201ENST00000358654 6204 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 THPO-203ENST00000445696 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 YIPF1-201ENST00000072644 1858 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ZMYM3-207ENST00000373998 6067 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CHMP5-202ENST00000419016 1957 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ZNF641-201ENST00000301042 4544 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 RHOXF1-201ENST00000217999 769 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 HNRNPA1-201ENST00000330752 1294 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-203ENST00000376563 1056 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-204ENST00000376566 760 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 TMEM52-203ENST00000378602 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-205ENST00000396763 965 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 TUBB2BP1-201ENST00000404155 871 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 EEF1DP2-201ENST00000433698 843 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 GS1-124K5.4-201ENST00000445681 540 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PQBP1-207ENST00000447146 1020 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC012618.1-201ENST00000461223 412 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 RN7SL11P-201ENST00000471305 293 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 RPL18AP8-201ENST00000486071 528 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PCMTD1-207ENST00000522514 1287 ntAPPRIS P1 TSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC104241.2-201ENST00000532748 789 ntTSL 3 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PPFIBP1-204ENST00000535047 875 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 NAA40-205ENST00000539656 577 ntTSL 4 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AL049840.2-201ENST00000602722 535 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 HPX-213ENST00000615166 826 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SCNN1A-201ENST00000228916 3135 ntAPPRIS P3 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CPEB1-213ENST00000617462 2068 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CDK11B-203ENST00000341832 2998 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC010970.1-201ENST00000445125 1848 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC026271.4-201ENST00000578214 1833 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 AC002350.2-201ENST00000623894 1828 ntBASIC12.13□□□□□ -0.47
HIST1H3AP68431 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SLC25A19-202ENST00000375261 1486 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 HFE-202ENST00000317896 1922 ntTSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SNAP91-215ENST00000521743 4263 ntAPPRIS P2 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 MBTD1-204ENST00000586178 5382 ntAPPRIS P1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 FUT3-201ENST00000303225 2584 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 PEG10-205ENST00000612748 2585 ntAPPRIS P5 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 UROC1-201ENST00000290868 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.47
HIST1H3AP68431 TMPRSS3-203ENST00000398405 2754 ntAPPRIS ALT1 TSL 5 BASIC12.13□□□□□ -0.47
HIST1H3AP68431 NDRG2-251ENST00000556147 2880 ntAPPRIS P4 TSL 5 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 C8orf31-201ENST00000395172 1875 ntTSL 2 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 CNOT7-211ENST00000523917 1885 ntTSL 2 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 C16orf45-209ENST00000566490 1854 ntTSL 5 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 PIK3R5-219ENST00000616147 4377 ntTSL 5 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 PSIP1-204ENST00000380738 3364 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 FAM212B-201ENST00000357260 5980 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 DAGLB-201ENST00000297056 2897 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 KRT74-203ENST00000549343 2858 ntTSL 5 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 SH3BGRL3-202ENST00000319041 768 ntTSL 2 BASIC12.12□□□□□ -0.47
HIST1H3AP68431 INO80C-202ENST00000334598 974 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
HIST1H3AP68431 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms