RNA–Protein interactions for RNA: ENST00000398587.6

PCDHGA11-201, Transcript of protocadherin gamma subfamily A, 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHGA11, Length 4,647 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA11-201ENST00000398587 NISCHQ9Y2I1 1504 aa25.45■■□□□ 1.66
PCDHGA11-201ENST00000398587 DCAF8L2P0C7V8 631 aa25.01■■□□□ 1.6
PCDHGA11-201ENST00000398587 SUPT5HO00267 1087 aaKnown RBP23.93■■□□□ 1.42
PCDHGA11-201ENST00000398587 SHROOM4Q9ULL8 1493 aa23.72■■□□□ 1.39
PCDHGA11-201ENST00000398587 EHMT2Q96KQ7 1210 aa22.7■■□□□ 1.23
PCDHGA11-201ENST00000398587 FAM9AQ8IZU1 332 aaPredicted RBP22.44■■□□□ 1.18
PCDHGA11-201ENST00000398587 APLP2Q06481 763 aa22.35■■□□□ 1.17
PCDHGA11-201ENST00000398587 TRIM41Q8WV44 630 aa22.27■■□□□ 1.16
PCDHGA11-201ENST00000398587 PCGF6Q9BYE7 350 aa22.16■■□□□ 1.14
PCDHGA11-201ENST00000398587 TTBK1Q5TCY1 1321 aaPredicted RBP21.93■■□□□ 1.1
PCDHGA11-201ENST00000398587 UBTFP17480 764 aaKnown RBP21.83■■□□□ 1.08
PCDHGA11-201ENST00000398587 RANGAP1P46060 587 aaPredicted RBP21.8■■□□□ 1.08
PCDHGA11-201ENST00000398587 ZEB1P37275 1124 aaPredicted RBP21.79■■□□□ 1.08
PCDHGA11-201ENST00000398587 CHIC1Q5VXU3 224 aa21.72■■□□□ 1.07
PCDHGA11-201ENST00000398587 CCER1Q8TC90 406 aaPredicted RBP21.65■■□□□ 1.06
PCDHGA11-201ENST00000398587 PELP1Q8IZL8 1130 aaKnown RBP21.61■■□□□ 1.05
PCDHGA11-201ENST00000398587 ATP1B4Q9UN42 357 aaPredicted RBP21.55■■□□□ 1.04
PCDHGA11-201ENST00000398587 ABCC9O60706 1549 aa21.53■■□□□ 1.04
PCDHGA11-201ENST00000398587 TRIM26Q12899 539 aaPredicted RBP21.48■■□□□ 1.03
PCDHGA11-201ENST00000398587 LOC105371045A0A1W2PR82 267 aa21.45■■□□□ 1.02
PCDHGA11-201ENST00000398587 PPARGC1BQ86YN6 1023 aaKnown RBP21.38■■□□□ 1.01
PCDHGA11-201ENST00000398587 CENPBP07199 599 aaPredicted RBP21.33■■□□□ 1
PCDHGA11-201ENST00000398587 PABPN1Q86U42 306 aaKnown RBP eCLIP21.22■□□□□ 0.99
PCDHGA11-201ENST00000398587 HRCP23327 699 aa21.21■□□□□ 0.99
PCDHGA11-201ENST00000398587 ZCCHC6Q5VYS8 1495 aaKnown RBP21.14■□□□□ 0.97
PCDHGA11-201ENST00000398587 CCDC180Q9P1Z9 1646 aa21■□□□□ 0.95
PCDHGA11-201ENST00000398587 ITGAEP38570 1179 aa20.95■□□□□ 0.94
PCDHGA11-201ENST00000398587 HNRNPUL2Q1KMD3 747 aaKnown RBP20.95■□□□□ 0.94
PCDHGA11-201ENST00000398587 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.87■□□□□ 0.93
PCDHGA11-201ENST00000398587 YTHDC1Q96MU7 727 aaKnown RBP20.84■□□□□ 0.93
PCDHGA11-201ENST00000398587 SCRIBQ14160 1630 aa20.79■□□□□ 0.92
PCDHGA11-201ENST00000398587 NEFLP07196 543 aa20.75■□□□□ 0.91
PCDHGA11-201ENST00000398587 CSRNP3Q8WYN3 585 aa20.66■□□□□ 0.9
PCDHGA11-201ENST00000398587 FAM50AQ14320 339 aaKnown RBP20.56■□□□□ 0.88
PCDHGA11-201ENST00000398587 MYT1LQ9UL68 1186 aa20.55■□□□□ 0.88
PCDHGA11-201ENST00000398587 ERICH6Q7L0X2 663 aa20.55■□□□□ 0.88
PCDHGA11-201ENST00000398587 DIEXFQ68CQ4 756 aaKnown RBP20.48■□□□□ 0.87
PCDHGA11-201ENST00000398587 POLR3GLQ9BT43 218 aa20.44■□□□□ 0.86
PCDHGA11-201ENST00000398587 RB1CC1Q8TDY2 1594 aa20.38■□□□□ 0.85
PCDHGA11-201ENST00000398587 DCAF1Q9Y4B6 1507 aa20.34■□□□□ 0.85
PCDHGA11-201ENST00000398587 TRIM52Q96A61 297 aa20.34■□□□□ 0.85
PCDHGA11-201ENST00000398587 RSF1Q96T23 1441 aaPredicted RBP20.33■□□□□ 0.84
PCDHGA11-201ENST00000398587 NACADO15069 1562 aa20.32■□□□□ 0.84
PCDHGA11-201ENST00000398587 NEUROD1Q13562 356 aa20.27■□□□□ 0.84
PCDHGA11-201ENST00000398587 P3H3Q8IVL6 736 aa20.27■□□□□ 0.84
PCDHGA11-201ENST00000398587 FBLN2P98095 1184 aa20.27■□□□□ 0.84
PCDHGA11-201ENST00000398587 CNGB1Q14028 1251 aaPredicted RBP20.2■□□□□ 0.82
PCDHGA11-201ENST00000398587 ZNF316A6NFI3 1004 aaPredicted RBP20.17■□□□□ 0.82
PCDHGA11-201ENST00000398587 CDK11AQ9UQ88 783 aaPredicted RBP20.06■□□□□ 0.8
PCDHGA11-201ENST00000398587 EEA1Q15075 1411 aa20.04■□□□□ 0.8
PCDHGA11-201ENST00000398587 ARID3CA6NKF2 412 aa20.04■□□□□ 0.8
PCDHGA11-201ENST00000398587 MYO15BQ96JP2 1530 aa20.03■□□□□ 0.8
PCDHGA11-201ENST00000398587 ANP32CO43423 234 aa20.02■□□□□ 0.79
PCDHGA11-201ENST00000398587 MYT1Q01538 1121 aa20■□□□□ 0.79
PCDHGA11-201ENST00000398587 ZNF326Q5BKZ1 582 aaKnown RBP19.99■□□□□ 0.79
PCDHGA11-201ENST00000398587 BAZ1AQ9NRL2 1556 aaPredicted RBP19.97■□□□□ 0.79
PCDHGA11-201ENST00000398587 SLC4A1APQ9BWU0 796 aaKnown RBP19.97■□□□□ 0.79
PCDHGA11-201ENST00000398587 CLIP1P30622 1438 aa19.95■□□□□ 0.78
PCDHGA11-201ENST00000398587 WRNQ14191 1432 aaPredicted RBP eCLIP19.94■□□□□ 0.78
PCDHGA11-201ENST00000398587 BAZ1BQ9UIG0 1483 aaKnown RBP19.94■□□□□ 0.78
PCDHGA11-201ENST00000398587 CECR2Q9BXF3 1484 aa19.92■□□□□ 0.78
PCDHGA11-201ENST00000398587 ZNF777Q9ULD5 760 aaPredicted RBP19.91■□□□□ 0.78
PCDHGA11-201ENST00000398587 GOLGA3Q08378 1498 aa19.89■□□□□ 0.77
PCDHGA11-201ENST00000398587 DAXXQ9UER7 740 aaPredicted RBP19.88■□□□□ 0.77
PCDHGA11-201ENST00000398587 GTF3C3Q9Y5Q9 886 aa19.87■□□□□ 0.77
PCDHGA11-201ENST00000398587 CEP162Q5TB80 1403 aa19.85■□□□□ 0.77
PCDHGA11-201ENST00000398587 TONSLQ96HA7 1378 aa19.8■□□□□ 0.76
PCDHGA11-201ENST00000398587 TNIKQ9UKE5 1360 aa19.79■□□□□ 0.76
PCDHGA11-201ENST00000398587 MTUS2Q5JR59 1369 aa19.77■□□□□ 0.75
PCDHGA11-201ENST00000398587 ACIN1Q9UKV3 1341 aaKnown RBP19.76■□□□□ 0.75
PCDHGA11-201ENST00000398587 KIF27Q86VH2 1401 aa19.75■□□□□ 0.75
PCDHGA11-201ENST00000398587 CEP164Q9UPV0 1460 aa19.74■□□□□ 0.75
PCDHGA11-201ENST00000398587 MROH2BQ7Z745 1585 aa19.69■□□□□ 0.74
PCDHGA11-201ENST00000398587 CHMP7Q8WUX9 453 aaPredicted RBP19.68■□□□□ 0.74
PCDHGA11-201ENST00000398587 BCANQ96GW7 911 aa19.68■□□□□ 0.74
PCDHGA11-201ENST00000398587 CHIC2Q9UKJ5 165 aa19.67■□□□□ 0.74
PCDHGA11-201ENST00000398587 CLSPNQ9HAW4 1339 aa19.64■□□□□ 0.73
PCDHGA11-201ENST00000398587 TSPY4P0CV99 314 aa19.6■□□□□ 0.73
PCDHGA11-201ENST00000398587 TSPY10P0CW01 314 aa19.6■□□□□ 0.73
PCDHGA11-201ENST00000398587 DDX10Q13206 875 aaKnown RBP19.59■□□□□ 0.73
PCDHGA11-201ENST00000398587 NPM1P06748 294 aaKnown RBP eCLIP19.58■□□□□ 0.72
PCDHGA11-201ENST00000398587 CCDC88BA6NC98 1476 aa19.56■□□□□ 0.72
PCDHGA11-201ENST00000398587 SOGA1O94964 1423 aa19.54■□□□□ 0.72
PCDHGA11-201ENST00000398587 SMARCA2P51531 1590 aa19.47■□□□□ 0.71
PCDHGA11-201ENST00000398587 RRP7BPQ9NSQ0 103 aa19.46■□□□□ 0.71
PCDHGA11-201ENST00000398587 RTL5Q5HYW3 569 aaPredicted RBP19.46■□□□□ 0.71
PCDHGA11-201ENST00000398587 PLEKHD1A6NEE1 506 aa19.45■□□□□ 0.7
PCDHGA11-201ENST00000398587 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.45■□□□□ 0.7
PCDHGA11-201ENST00000398587 CARMIL1Q5VZK9 1371 aa19.43■□□□□ 0.7
PCDHGA11-201ENST00000398587 CHGAP10645 457 aaKnown RBP19.43■□□□□ 0.7
PCDHGA11-201ENST00000398587 HNRNPUQ00839 825 aaKnown RBP eCLIP19.42■□□□□ 0.7
PCDHGA11-201ENST00000398587 CUX2O14529 1486 aa19.42■□□□□ 0.7
PCDHGA11-201ENST00000398587 NEFMP07197 916 aa19.42■□□□□ 0.7
PCDHGA11-201ENST00000398587 ABCC8Q09428 1581 aa19.4■□□□□ 0.7
PCDHGA11-201ENST00000398587 TOP2AP11388 1531 aaKnown RBP19.4■□□□□ 0.7
PCDHGA11-201ENST00000398587 ESF1Q9H501 851 aaKnown RBP19.39■□□□□ 0.7
PCDHGA11-201ENST00000398587 FHAD1B1AJZ9 1412 aa19.39■□□□□ 0.69
PCDHGA11-201ENST00000398587 MIER1Q8N108 512 aa19.39■□□□□ 0.69
PCDHGA11-201ENST00000398587 CANXP27824 592 aaKnown RBP19.38■□□□□ 0.69
PCDHGA11-201ENST00000398587 WIZO95785 1651 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms