Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 TNFRSF11A-201ENST00000269485 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 HDAC9-208ENST00000417496 2524 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 FMNL3-205ENST00000550488 4120 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
BDNFP23560 ALDH4A1-206ENST00000538839 2957 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC14.68□□□□□ -0.06
BDNFP23560 UBBP4-202ENST00000584755 1459 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 DENND1C-202ENST00000543576 2395 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 NKIRAS2-201ENST00000307641 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 RRAGA-201ENST00000380527 1589 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
BDNFP23560 LINC00479-201ENST00000412102 2033 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 Z98885.2-201ENST00000565177 1567 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 MAP3K3-203ENST00000577395 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 NRADDP-202ENST00000641269 1585 ntBASIC14.68□□□□□ -0.06
BDNFP23560 ZFP36L1-201ENST00000336440 3026 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.68□□□□□ -0.06
BDNFP23560 FTSJ1-203ENST00000396894 1669 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 IRAK4-212ENST00000551736 1684 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 NIPA1-207ENST00000561183 1675 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 LINC01535-206ENST00000592712 1699 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 SNX14-203ENST00000369627 3111 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 NRDC-201ENST00000352171 3691 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
BDNFP23560 TMEM40-205ENST00000435575 1785 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
BDNFP23560 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 TCAF1-205ENST00000479870 5733 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 BAIAP3-216ENST00000628027 4732 ntTSL 5 BASIC14.67□□□□□ -0.06
BDNFP23560 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 AC117503.4-201ENST00000623229 1418 ntBASIC14.67□□□□□ -0.06
BDNFP23560 STIP1-203ENST00000358794 2743 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 TMEM9-202ENST00000367332 1544 ntAPPRIS ALT1 TSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 PPT1-203ENST00000433473 2267 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 MAPRE2-201ENST00000300249 4265 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 AC007952.2-201ENST00000399091 1176 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.67□□□□□ -0.06
BDNFP23560 FAM3D-AS1-201ENST00000464125 821 ntTSL 3 BASIC14.67□□□□□ -0.06
BDNFP23560 AC025186.1-201ENST00000478174 870 ntBASIC14.67□□□□□ -0.06
BDNFP23560 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 AC093300.1-201ENST00000510368 1201 ntBASIC14.67□□□□□ -0.06
BDNFP23560 AC226150.1-201ENST00000544259 466 ntBASIC14.67□□□□□ -0.06
BDNFP23560 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC14.67□□□□□ -0.06
BDNFP23560 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 AP005901.3-201ENST00000581666 415 ntTSL 3 BASIC14.67□□□□□ -0.06
BDNFP23560 MIR4326-201ENST00000582203 59 ntBASIC14.67□□□□□ -0.06
BDNFP23560 ATF7-212ENST00000591397 860 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC14.67□□□□□ -0.06
BDNFP23560 GARS-210ENST00000627489 324 ntTSL 4 BASIC14.67□□□□□ -0.06
BDNFP23560 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 KIAA0895-203ENST00000338533 4132 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 PCNA-202ENST00000379160 1359 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
BDNFP23560 SLC25A3-216ENST00000551917 1359 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 AC025183.3-201ENST00000623526 1482 ntBASIC14.67□□□□□ -0.06
BDNFP23560 GRIK5-201ENST00000262895 3493 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 NME7-203ENST00000472647 1590 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 WASF3-202ENST00000361042 4823 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 SYT4-205ENST00000590752 1765 ntTSL 2 BASIC14.67□□□□□ -0.06
BDNFP23560 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC14.67□□□□□ -0.06
BDNFP23560 ATP2C1-214ENST00000508532 4969 ntAPPRIS ALT1 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 MAP2K4-201ENST00000353533 3826 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 NCOR2-203ENST00000404621 8520 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
BDNFP23560 SSTR1-201ENST00000267377 4295 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 CEP128-201ENST00000216517 1606 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 GIPC2-201ENST00000370759 3847 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 CTBP1-AS2-206ENST00000581398 5652 ntBASIC14.66□□□□□ -0.06
BDNFP23560 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 L3MBTL1-206ENST00000427442 3157 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 SMG9-211ENST00000601170 2387 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 ARMCX3-203ENST00000471229 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 PGD-201ENST00000270776 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 GLP2R-204ENST00000574745 1882 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 MAGEH1-201ENST00000342972 1462 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
BDNFP23560 APBB3-205ENST00000412920 1455 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 SERPINB6-206ENST00000380546 1375 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 HTR3E-205ENST00000436361 1371 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 TMEM14C-201ENST00000229563 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 MAGOH-202ENST00000371470 756 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
BDNFP23560 IGHV3-49-201ENST00000390625 439 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
BDNFP23560 GULP1-204ENST00000409637 1242 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.66□□□□□ -0.06
BDNFP23560 MUTYH-231ENST00000488731 740 ntTSL 5 BASIC14.66□□□□□ -0.06
BDNFP23560 AC108199.1-201ENST00000504249 508 ntTSL 3 BASIC14.66□□□□□ -0.06
BDNFP23560 TROAP-213ENST00000550709 778 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
BDNFP23560 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC14.66□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 54 ms