Protein–RNA interactions for Protein: Q9Y5B0

CTDP1, RNA polymerase II subunit A C-terminal domain phosphatase, humanhuman

Predicted RBP Predictions only

Length 961 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDP1Q9Y5B0 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC32.4■■■□□ 2.78
CTDP1Q9Y5B0 SUZ12P1-203ENST00000578195 985 ntBASIC32.38■■■□□ 2.77
CTDP1Q9Y5B0 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.36■■■□□ 2.77
CTDP1Q9Y5B0 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.35■■■□□ 2.77
CTDP1Q9Y5B0 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC32.35■■■□□ 2.77
CTDP1Q9Y5B0 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC32.32■■■□□ 2.76
CTDP1Q9Y5B0 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC32.32■■■□□ 2.76
CTDP1Q9Y5B0 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC32.31■■■□□ 2.76
CTDP1Q9Y5B0 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC32.31■■■□□ 2.76
CTDP1Q9Y5B0 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC32.29■■■□□ 2.76
CTDP1Q9Y5B0 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC32.28■■■□□ 2.76
CTDP1Q9Y5B0 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC32.28■■■□□ 2.76
CTDP1Q9Y5B0 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.27■■■□□ 2.76
CTDP1Q9Y5B0 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CTDP1Q9Y5B0 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CTDP1Q9Y5B0 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC32.27■■■□□ 2.76
CTDP1Q9Y5B0 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CTDP1Q9Y5B0 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CTDP1Q9Y5B0 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.26■■■□□ 2.75
CTDP1Q9Y5B0 AL133380.1-201ENST00000506013 324 ntBASIC32.25■■■□□ 2.75
CTDP1Q9Y5B0 CAHM-201ENST00000604200 896 ntBASIC32.21■■■□□ 2.75
CTDP1Q9Y5B0 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC32.21■■■□□ 2.75
CTDP1Q9Y5B0 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC32.18■■■□□ 2.74
CTDP1Q9Y5B0 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC32.18■■■□□ 2.74
CTDP1Q9Y5B0 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.17■■■□□ 2.74
CTDP1Q9Y5B0 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
CTDP1Q9Y5B0 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
CTDP1Q9Y5B0 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.15■■■□□ 2.74
CTDP1Q9Y5B0 AL391121.1-201ENST00000607967 1349 ntBASIC32.15■■■□□ 2.74
CTDP1Q9Y5B0 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
CTDP1Q9Y5B0 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC32.11■■■□□ 2.73
CTDP1Q9Y5B0 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
CTDP1Q9Y5B0 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.11■■■□□ 2.73
CTDP1Q9Y5B0 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC32.09■■■□□ 2.73
CTDP1Q9Y5B0 RPS2P35-201ENST00000443417 897 ntBASIC32.09■■■□□ 2.73
CTDP1Q9Y5B0 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CTDP1Q9Y5B0 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC32.08■■■□□ 2.73
CTDP1Q9Y5B0 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.08■■■□□ 2.73
CTDP1Q9Y5B0 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC32.08■■■□□ 2.73
CTDP1Q9Y5B0 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC32.08■■■□□ 2.73
CTDP1Q9Y5B0 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.02■■■□□ 2.72
CTDP1Q9Y5B0 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.02■■■□□ 2.72
CTDP1Q9Y5B0 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC31.99■■■□□ 2.71
CTDP1Q9Y5B0 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC31.97■■■□□ 2.71
CTDP1Q9Y5B0 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC31.94■■■□□ 2.7
CTDP1Q9Y5B0 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC31.93■■■□□ 2.7
CTDP1Q9Y5B0 AP006261.1-201ENST00000584783 668 ntBASIC31.93■■■□□ 2.7
CTDP1Q9Y5B0 FOXD1-202ENST00000615637 2272 ntAPPRIS P1 BASIC31.92■■■□□ 2.7
CTDP1Q9Y5B0 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31.91■■■□□ 2.7
CTDP1Q9Y5B0 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC31.9■■■□□ 2.7
CTDP1Q9Y5B0 HNRNPLP2-201ENST00000568980 1570 ntBASIC31.89■■■□□ 2.7
CTDP1Q9Y5B0 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC31.88■■■□□ 2.69
CTDP1Q9Y5B0 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC31.87■■■□□ 2.69
CTDP1Q9Y5B0 AL162393.1-201ENST00000437852 946 ntBASIC31.87■■■□□ 2.69
CTDP1Q9Y5B0 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC31.83■■■□□ 2.69
CTDP1Q9Y5B0 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC31.81■■■□□ 2.68
CTDP1Q9Y5B0 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CTDP1Q9Y5B0 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC31.81■■■□□ 2.68
CTDP1Q9Y5B0 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.81■■■□□ 2.68
CTDP1Q9Y5B0 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.81■■■□□ 2.68
CTDP1Q9Y5B0 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC31.8■■■□□ 2.68
CTDP1Q9Y5B0 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC31.8■■■□□ 2.68
CTDP1Q9Y5B0 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC31.79■■■□□ 2.68
CTDP1Q9Y5B0 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.77■■■□□ 2.68
CTDP1Q9Y5B0 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CTDP1Q9Y5B0 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC31.77■■■□□ 2.68
CTDP1Q9Y5B0 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
CTDP1Q9Y5B0 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.77■■■□□ 2.68
CTDP1Q9Y5B0 MIR3665-201ENST00000578708 105 ntBASIC31.75■■■□□ 2.67
CTDP1Q9Y5B0 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC31.75■■■□□ 2.67
CTDP1Q9Y5B0 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC31.75■■■□□ 2.67
CTDP1Q9Y5B0 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CTDP1Q9Y5B0 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.73■■■□□ 2.67
CTDP1Q9Y5B0 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CTDP1Q9Y5B0 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC31.71■■■□□ 2.67
CTDP1Q9Y5B0 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.7■■■□□ 2.67
CTDP1Q9Y5B0 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.69■■■□□ 2.66
CTDP1Q9Y5B0 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC31.69■■■□□ 2.66
CTDP1Q9Y5B0 CHML-205ENST00000638160 705 ntTSL 3 BASIC31.69■■■□□ 2.66
CTDP1Q9Y5B0 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC31.69■■■□□ 2.66
CTDP1Q9Y5B0 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
CTDP1Q9Y5B0 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
CTDP1Q9Y5B0 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CTDP1Q9Y5B0 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CTDP1Q9Y5B0 MIR762-201ENST00000390236 83 ntBASIC31.67■■■□□ 2.66
CTDP1Q9Y5B0 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC31.66■■■□□ 2.66
CTDP1Q9Y5B0 WASH5P-204ENST00000632292 975 ntBASIC31.66■■■□□ 2.66
CTDP1Q9Y5B0 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC31.63■■■□□ 2.65
CTDP1Q9Y5B0 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC31.62■■■□□ 2.65
CTDP1Q9Y5B0 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC31.61■■■□□ 2.65
CTDP1Q9Y5B0 AC005559.1-201ENST00000589661 871 ntBASIC31.61■■■□□ 2.65
CTDP1Q9Y5B0 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC31.61■■■□□ 2.65
CTDP1Q9Y5B0 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC31.61■■■□□ 2.65
CTDP1Q9Y5B0 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC31.6■■■□□ 2.65
CTDP1Q9Y5B0 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CTDP1Q9Y5B0 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC31.59■■■□□ 2.65
CTDP1Q9Y5B0 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
CTDP1Q9Y5B0 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC31.58■■■□□ 2.65
CTDP1Q9Y5B0 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC31.57■■■□□ 2.64
CTDP1Q9Y5B0 DUX4L28-201ENST00000623687 678 ntBASIC31.57■■■□□ 2.64
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms