Protein–RNA interactions for Protein: Q9Y2R2

PTPN22, Tyrosine-protein phosphatase non-receptor type 22, humanhuman

Predictions only

Length 807 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN22Q9Y2R2 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
PTPN22Q9Y2R2 MBP-237ENST00000579129 1052 ntTSL 5 BASIC32.68■■■□□ 2.82
PTPN22Q9Y2R2 HLA-V-202ENST00000446817 847 ntBASIC32.67■■■□□ 2.82
PTPN22Q9Y2R2 MLEC-202ENST00000412616 841 ntTSL 3 BASIC32.66■■■□□ 2.82
PTPN22Q9Y2R2 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
PTPN22Q9Y2R2 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
PTPN22Q9Y2R2 MIR3665-201ENST00000578708 105 ntBASIC32.64■■■□□ 2.82
PTPN22Q9Y2R2 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC32.63■■■□□ 2.81
PTPN22Q9Y2R2 HNRNPAB-207ENST00000514633 1571 ntAPPRIS ALT2 TSL 5 BASIC32.62■■■□□ 2.81
PTPN22Q9Y2R2 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC32.61■■■□□ 2.81
PTPN22Q9Y2R2 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC32.6■■■□□ 2.81
PTPN22Q9Y2R2 ZNF358-202ENST00000597229 1954 ntAPPRIS P1 TSL 2 BASIC32.58■■■□□ 2.81
PTPN22Q9Y2R2 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC32.56■■■□□ 2.8
PTPN22Q9Y2R2 CATIP-201ENST00000289388 1323 ntAPPRIS P1 TSL 1 (best) BASIC32.55■■■□□ 2.8
PTPN22Q9Y2R2 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC32.55■■■□□ 2.8
PTPN22Q9Y2R2 MVK-208ENST00000539696 608 ntTSL 5 BASIC32.54■■■□□ 2.8
PTPN22Q9Y2R2 AC087741.3-201ENST00000624270 1347 ntBASIC32.52■■■□□ 2.8
PTPN22Q9Y2R2 AL133380.1-201ENST00000506013 324 ntBASIC32.52■■■□□ 2.8
PTPN22Q9Y2R2 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC32.51■■■□□ 2.79
PTPN22Q9Y2R2 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC32.5■■■□□ 2.79
PTPN22Q9Y2R2 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC32.5■■■□□ 2.79
PTPN22Q9Y2R2 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC32.5■■■□□ 2.79
PTPN22Q9Y2R2 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC32.48■■■□□ 2.79
PTPN22Q9Y2R2 EBPL-202ENST00000378268 680 ntTSL 3 BASIC32.46■■■□□ 2.79
PTPN22Q9Y2R2 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC32.46■■■□□ 2.79
PTPN22Q9Y2R2 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC32.44■■■□□ 2.78
PTPN22Q9Y2R2 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC32.44■■■□□ 2.78
PTPN22Q9Y2R2 RSG1-201ENST00000375599 1545 ntAPPRIS P1 TSL 1 (best) BASIC32.44■■■□□ 2.78
PTPN22Q9Y2R2 AC145285.7-201ENST00000614819 1539 ntBASIC32.44■■■□□ 2.78
PTPN22Q9Y2R2 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC32.43■■■□□ 2.78
PTPN22Q9Y2R2 DUX4L28-201ENST00000623687 678 ntBASIC32.41■■■□□ 2.78
PTPN22Q9Y2R2 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC32.38■■■□□ 2.77
PTPN22Q9Y2R2 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC32.37■■■□□ 2.77
PTPN22Q9Y2R2 AC044849.2-201ENST00000606596 710 ntBASIC32.37■■■□□ 2.77
PTPN22Q9Y2R2 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC32.35■■■□□ 2.77
PTPN22Q9Y2R2 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC32.35■■■□□ 2.77
PTPN22Q9Y2R2 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC32.35■■■□□ 2.77
PTPN22Q9Y2R2 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC32.35■■■□□ 2.77
PTPN22Q9Y2R2 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC32.34■■■□□ 2.77
PTPN22Q9Y2R2 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC32.33■■■□□ 2.77
PTPN22Q9Y2R2 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC32.31■■■□□ 2.76
PTPN22Q9Y2R2 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC32.3■■■□□ 2.76
PTPN22Q9Y2R2 FEZF2-203ENST00000486811 2001 ntAPPRIS P1 TSL 5 BASIC32.3■■■□□ 2.76
PTPN22Q9Y2R2 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC32.28■■■□□ 2.76
PTPN22Q9Y2R2 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC32.27■■■□□ 2.76
PTPN22Q9Y2R2 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC32.27■■■□□ 2.76
PTPN22Q9Y2R2 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC32.27■■■□□ 2.76
PTPN22Q9Y2R2 CHML-205ENST00000638160 705 ntTSL 3 BASIC32.27■■■□□ 2.76
PTPN22Q9Y2R2 ILK-212ENST00000532063 1617 ntTSL 2 BASIC32.24■■■□□ 2.75
PTPN22Q9Y2R2 ZNRF2P2-203ENST00000454624 420 ntBASIC32.22■■■□□ 2.75
PTPN22Q9Y2R2 MIR762-201ENST00000390236 83 ntBASIC32.2■■■□□ 2.75
PTPN22Q9Y2R2 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC32.19■■■□□ 2.74
PTPN22Q9Y2R2 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC32.18■■■□□ 2.74
PTPN22Q9Y2R2 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC32.18■■■□□ 2.74
PTPN22Q9Y2R2 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC32.17■■■□□ 2.74
PTPN22Q9Y2R2 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC32.17■■■□□ 2.74
PTPN22Q9Y2R2 AC005559.1-201ENST00000589661 871 ntBASIC32.17■■■□□ 2.74
PTPN22Q9Y2R2 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC32.16■■■□□ 2.74
PTPN22Q9Y2R2 MTMR1-214ENST00000542156 1227 ntTSL 1 (best) BASIC32.16■■■□□ 2.74
PTPN22Q9Y2R2 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC32.16■■■□□ 2.74
PTPN22Q9Y2R2 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC32.15■■■□□ 2.74
PTPN22Q9Y2R2 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC32.15■■■□□ 2.74
PTPN22Q9Y2R2 TRIP10-202ENST00000313285 2035 ntAPPRIS P1 TSL 1 (best) BASIC32.14■■■□□ 2.74
PTPN22Q9Y2R2 KHSRP-213ENST00000619396 2226 ntAPPRIS ALT2 TSL 5 BASIC32.14■■■□□ 2.74
PTPN22Q9Y2R2 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC32.14■■■□□ 2.74
PTPN22Q9Y2R2 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC32.13■■■□□ 2.73
PTPN22Q9Y2R2 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC32.13■■■□□ 2.73
PTPN22Q9Y2R2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC32.12■■■□□ 2.73
PTPN22Q9Y2R2 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC32.11■■■□□ 2.73
PTPN22Q9Y2R2 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC32.1■■■□□ 2.73
PTPN22Q9Y2R2 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC32.08■■■□□ 2.73
PTPN22Q9Y2R2 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC32.06■■■□□ 2.72
PTPN22Q9Y2R2 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC32.06■■■□□ 2.72
PTPN22Q9Y2R2 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC32.05■■■□□ 2.72
PTPN22Q9Y2R2 BOD1-206ENST00000480951 814 ntTSL 2 BASIC32.05■■■□□ 2.72
PTPN22Q9Y2R2 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC32.04■■■□□ 2.72
PTPN22Q9Y2R2 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
PTPN22Q9Y2R2 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC32.04■■■□□ 2.72
PTPN22Q9Y2R2 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC32.03■■■□□ 2.72
PTPN22Q9Y2R2 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC32.01■■■□□ 2.72
PTPN22Q9Y2R2 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC32.01■■■□□ 2.71
PTPN22Q9Y2R2 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC32■■■□□ 2.71
PTPN22Q9Y2R2 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC32■■■□□ 2.71
PTPN22Q9Y2R2 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC32■■■□□ 2.71
PTPN22Q9Y2R2 LTB4R2-204ENST00000533293 1515 ntAPPRIS P1 TSL 1 (best) BASIC31.98■■■□□ 2.71
PTPN22Q9Y2R2 RPS2-202ENST00000526522 924 ntTSL 2 BASIC31.97■■■□□ 2.71
PTPN22Q9Y2R2 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC31.96■■■□□ 2.71
PTPN22Q9Y2R2 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC31.96■■■□□ 2.71
PTPN22Q9Y2R2 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC31.95■■■□□ 2.71
PTPN22Q9Y2R2 HGH1-207ENST00000628266 258 ntTSL 5 BASIC31.95■■■□□ 2.71
PTPN22Q9Y2R2 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC31.95■■■□□ 2.71
PTPN22Q9Y2R2 MIR4449-201ENST00000578365 66 ntBASIC31.94■■■□□ 2.7
PTPN22Q9Y2R2 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.92■■■□□ 2.7
PTPN22Q9Y2R2 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.92■■■□□ 2.7
PTPN22Q9Y2R2 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC31.9■■■□□ 2.7
PTPN22Q9Y2R2 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC31.85■■■□□ 2.69
PTPN22Q9Y2R2 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.84■■■□□ 2.69
PTPN22Q9Y2R2 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC31.84■■■□□ 2.69
PTPN22Q9Y2R2 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC31.84■■■□□ 2.69
PTPN22Q9Y2R2 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC31.83■■■□□ 2.69
Retrieved 100 of 98,524 protein–RNA pairs in 8.5 ms