Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 AL133380.1-201ENST00000506013 324 ntBASIC31.16■■■□□ 2.58
NOD1Q9Y239 AP006261.1-201ENST00000584783 668 ntBASIC31.14■■■□□ 2.58
NOD1Q9Y239 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.14■■■□□ 2.57
NOD1Q9Y239 AL162393.1-201ENST00000437852 946 ntBASIC31.13■■■□□ 2.57
NOD1Q9Y239 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
NOD1Q9Y239 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.07■■■□□ 2.56
NOD1Q9Y239 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC31.07■■■□□ 2.56
NOD1Q9Y239 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC31.07■■■□□ 2.56
NOD1Q9Y239 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC31.07■■■□□ 2.56
NOD1Q9Y239 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC31.05■■■□□ 2.56
NOD1Q9Y239 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC31.04■■■□□ 2.56
NOD1Q9Y239 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC31.04■■■□□ 2.56
NOD1Q9Y239 NRG1-221ENST00000614767 762 ntTSL 5 BASIC31.02■■■□□ 2.56
NOD1Q9Y239 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC31.01■■■□□ 2.55
NOD1Q9Y239 HNRNPLP2-201ENST00000568980 1570 ntBASIC31■■■□□ 2.55
NOD1Q9Y239 EBPL-202ENST00000378268 680 ntTSL 3 BASIC31■■■□□ 2.55
NOD1Q9Y239 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC31■■■□□ 2.55
NOD1Q9Y239 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
NOD1Q9Y239 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC30.98■■■□□ 2.55
NOD1Q9Y239 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
NOD1Q9Y239 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.98■■■□□ 2.55
NOD1Q9Y239 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
NOD1Q9Y239 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
NOD1Q9Y239 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.96■■■□□ 2.55
NOD1Q9Y239 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
NOD1Q9Y239 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.95■■■□□ 2.55
NOD1Q9Y239 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.95■■■□□ 2.55
NOD1Q9Y239 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
NOD1Q9Y239 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC30.92■■■□□ 2.54
NOD1Q9Y239 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC30.92■■■□□ 2.54
NOD1Q9Y239 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC30.92■■■□□ 2.54
NOD1Q9Y239 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC30.9■■■□□ 2.54
NOD1Q9Y239 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC30.9■■■□□ 2.54
NOD1Q9Y239 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC30.9■■■□□ 2.54
NOD1Q9Y239 PPP2CB-201ENST00000221138 2006 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
NOD1Q9Y239 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NOD1Q9Y239 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.89■■■□□ 2.54
NOD1Q9Y239 MIR3665-201ENST00000578708 105 ntBASIC30.88■■■□□ 2.53
NOD1Q9Y239 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
NOD1Q9Y239 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
NOD1Q9Y239 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC30.84■■■□□ 2.53
NOD1Q9Y239 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
NOD1Q9Y239 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC30.82■■■□□ 2.52
NOD1Q9Y239 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.81■■■□□ 2.52
NOD1Q9Y239 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC30.81■■■□□ 2.52
NOD1Q9Y239 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
NOD1Q9Y239 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
NOD1Q9Y239 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC30.8■■■□□ 2.52
NOD1Q9Y239 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.79■■■□□ 2.52
NOD1Q9Y239 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.77■■■□□ 2.52
NOD1Q9Y239 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
NOD1Q9Y239 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
NOD1Q9Y239 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.74■■■□□ 2.51
NOD1Q9Y239 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.71■■■□□ 2.51
NOD1Q9Y239 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NOD1Q9Y239 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC30.71■■■□□ 2.51
NOD1Q9Y239 CHML-205ENST00000638160 705 ntTSL 3 BASIC30.71■■■□□ 2.51
NOD1Q9Y239 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.7■■■□□ 2.51
NOD1Q9Y239 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.7■■■□□ 2.51
NOD1Q9Y239 MIR762-201ENST00000390236 83 ntBASIC30.69■■■□□ 2.5
NOD1Q9Y239 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NOD1Q9Y239 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.68■■■□□ 2.5
NOD1Q9Y239 DUX4L28-201ENST00000623687 678 ntBASIC30.68■■■□□ 2.5
NOD1Q9Y239 AC087741.3-201ENST00000624270 1347 ntBASIC30.68■■■□□ 2.5
NOD1Q9Y239 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NOD1Q9Y239 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NOD1Q9Y239 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC30.66■■■□□ 2.5
NOD1Q9Y239 ABHD17AP4-201ENST00000411545 909 ntBASIC30.65■■■□□ 2.5
NOD1Q9Y239 AC005559.1-201ENST00000589661 871 ntBASIC30.65■■■□□ 2.5
NOD1Q9Y239 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NOD1Q9Y239 AC044849.2-201ENST00000606596 710 ntBASIC30.62■■■□□ 2.49
NOD1Q9Y239 MIR7108-201ENST00000614319 87 ntBASIC30.62■■■□□ 2.49
NOD1Q9Y239 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NOD1Q9Y239 MLEC-202ENST00000412616 841 ntTSL 3 BASIC30.6■■■□□ 2.49
NOD1Q9Y239 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.59■■■□□ 2.49
NOD1Q9Y239 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.49
NOD1Q9Y239 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC30.57■■■□□ 2.48
NOD1Q9Y239 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.57■■■□□ 2.48
NOD1Q9Y239 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.57■■■□□ 2.48
NOD1Q9Y239 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC30.56■■■□□ 2.48
NOD1Q9Y239 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC30.56■■■□□ 2.48
NOD1Q9Y239 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NOD1Q9Y239 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
NOD1Q9Y239 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC30.54■■■□□ 2.48
NOD1Q9Y239 ACOT7-209ENST00000545482 1804 ntAPPRIS ALT2 TSL 1 (best) BASIC30.52■■■□□ 2.48
NOD1Q9Y239 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC30.51■■■□□ 2.47
NOD1Q9Y239 PVT1-219ENST00000523427 938 ntTSL 3 BASIC30.5■■■□□ 2.47
NOD1Q9Y239 DENR-202ENST00000455982 1052 ntTSL 5 BASIC30.48■■■□□ 2.47
NOD1Q9Y239 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
NOD1Q9Y239 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC30.46■■■□□ 2.47
NOD1Q9Y239 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
NOD1Q9Y239 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC30.44■■■□□ 2.46
NOD1Q9Y239 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC30.42■■■□□ 2.46
NOD1Q9Y239 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC30.41■■■□□ 2.46
NOD1Q9Y239 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC30.41■■■□□ 2.46
NOD1Q9Y239 WASH5P-204ENST00000632292 975 ntBASIC30.41■■■□□ 2.46
NOD1Q9Y239 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC30.4■■■□□ 2.46
NOD1Q9Y239 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC30.38■■■□□ 2.45
NOD1Q9Y239 BOD1-206ENST00000480951 814 ntTSL 2 BASIC30.38■■■□□ 2.45
NOD1Q9Y239 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC30.38■■■□□ 2.45
Retrieved 100 of 98,524 protein–RNA pairs in 14.8 ms