Protein–RNA interactions for Protein: Q6P087

RPUSD3, Mitochondrial mRNA pseudouridine synthase RPUSD3, humanhuman

Known RBP Predictions only

Length 351 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD3Q6P087 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPUSD3Q6P087 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
RPUSD3Q6P087 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
RPUSD3Q6P087 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.59■■□□□ 1.69
RPUSD3Q6P087 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.58■■□□□ 1.69
RPUSD3Q6P087 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC25.57■■□□□ 1.68
RPUSD3Q6P087 AL133380.1-201ENST00000506013 324 ntBASIC25.56■■□□□ 1.68
RPUSD3Q6P087 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
RPUSD3Q6P087 AL391121.1-201ENST00000607967 1349 ntBASIC25.55■■□□□ 1.68
RPUSD3Q6P087 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.53■■□□□ 1.68
RPUSD3Q6P087 AP006261.1-201ENST00000584783 668 ntBASIC25.51■■□□□ 1.67
RPUSD3Q6P087 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
RPUSD3Q6P087 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
RPUSD3Q6P087 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC25.46■■□□□ 1.67
RPUSD3Q6P087 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC25.45■■□□□ 1.66
RPUSD3Q6P087 AL162393.1-201ENST00000437852 946 ntBASIC25.42■■□□□ 1.66
RPUSD3Q6P087 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
RPUSD3Q6P087 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC25.41■■□□□ 1.66
RPUSD3Q6P087 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 KCTD17-209ENST00000610767 1502 ntAPPRIS ALT2 TSL 3 BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 CRIP2-201ENST00000329146 1857 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 GNB5-202ENST00000358784 1735 ntAPPRIS ALT1 TSL 1 (best) BASIC25.4■■□□□ 1.66
RPUSD3Q6P087 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 NRG1-221ENST00000614767 762 ntTSL 5 BASIC25.38■■□□□ 1.65
RPUSD3Q6P087 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.38■■□□□ 1.65
RPUSD3Q6P087 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
RPUSD3Q6P087 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 EBPL-202ENST00000378268 680 ntTSL 3 BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.36■■□□□ 1.65
RPUSD3Q6P087 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.35■■□□□ 1.65
RPUSD3Q6P087 AKR1E2-201ENST00000298375 1566 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
RPUSD3Q6P087 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
RPUSD3Q6P087 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC25.31■■□□□ 1.64
RPUSD3Q6P087 FAM185A-202ENST00000413034 1179 ntAPPRIS P4 TSL 5 BASIC25.3■■□□□ 1.64
RPUSD3Q6P087 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
RPUSD3Q6P087 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
RPUSD3Q6P087 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
RPUSD3Q6P087 MIR3665-201ENST00000578708 105 ntBASIC25.28■■□□□ 1.64
RPUSD3Q6P087 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
RPUSD3Q6P087 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC25.27■■□□□ 1.64
RPUSD3Q6P087 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
RPUSD3Q6P087 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC25.25■■□□□ 1.63
RPUSD3Q6P087 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RPUSD3Q6P087 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
RPUSD3Q6P087 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
RPUSD3Q6P087 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
RPUSD3Q6P087 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.22■■□□□ 1.63
RPUSD3Q6P087 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC25.19■■□□□ 1.62
RPUSD3Q6P087 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 CHML-205ENST00000638160 705 ntTSL 3 BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RPUSD3Q6P087 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RPUSD3Q6P087 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC25.16■■□□□ 1.62
RPUSD3Q6P087 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 PGAM5-201ENST00000317555 1182 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC25.15■■□□□ 1.62
RPUSD3Q6P087 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RPUSD3Q6P087 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC25.12■■□□□ 1.61
RPUSD3Q6P087 AC087741.3-201ENST00000624270 1347 ntBASIC25.12■■□□□ 1.61
RPUSD3Q6P087 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
RPUSD3Q6P087 MIR762-201ENST00000390236 83 ntBASIC25.11■■□□□ 1.61
RPUSD3Q6P087 DUX4L28-201ENST00000623687 678 ntBASIC25.1■■□□□ 1.61
RPUSD3Q6P087 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
RPUSD3Q6P087 AC005559.1-201ENST00000589661 871 ntBASIC25.06■■□□□ 1.6
RPUSD3Q6P087 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
RPUSD3Q6P087 DENR-202ENST00000455982 1052 ntTSL 5 BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 AC044849.2-201ENST00000606596 710 ntBASIC25.04■■□□□ 1.6
RPUSD3Q6P087 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
RPUSD3Q6P087 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC25.03■■□□□ 1.6
RPUSD3Q6P087 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.03■■□□□ 1.6
RPUSD3Q6P087 ABHD17AP4-201ENST00000411545 909 ntBASIC25.02■■□□□ 1.6
RPUSD3Q6P087 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
RPUSD3Q6P087 NKIRAS2-202ENST00000316082 833 ntTSL 5 BASIC25■■□□□ 1.59
RPUSD3Q6P087 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC25■■□□□ 1.59
RPUSD3Q6P087 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
RPUSD3Q6P087 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
RPUSD3Q6P087 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC24.98■■□□□ 1.59
RPUSD3Q6P087 WASH5P-204ENST00000632292 975 ntBASIC24.98■■□□□ 1.59
RPUSD3Q6P087 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.96■■□□□ 1.59
RPUSD3Q6P087 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC24.95■■□□□ 1.58
Retrieved 100 of 98,524 protein–RNA pairs in 110.5 ms