Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 C11orf63-202ENST00000307257 1964 ntTSL 2 BASIC30.99■■■□□ 2.55
CLCN3P51790 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC30.98■■■□□ 2.55
CLCN3P51790 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC30.98■■■□□ 2.55
CLCN3P51790 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC30.96■■■□□ 2.55
CLCN3P51790 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC30.96■■■□□ 2.55
CLCN3P51790 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC30.96■■■□□ 2.55
CLCN3P51790 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC30.94■■■□□ 2.54
CLCN3P51790 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC30.92■■■□□ 2.54
CLCN3P51790 SUZ12P1-203ENST00000578195 985 ntBASIC30.88■■■□□ 2.53
CLCN3P51790 LGALS3-201ENST00000254301 1146 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
CLCN3P51790 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
CLCN3P51790 AL133380.1-201ENST00000506013 324 ntBASIC30.83■■■□□ 2.53
CLCN3P51790 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC30.81■■■□□ 2.52
CLCN3P51790 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC30.8■■■□□ 2.52
CLCN3P51790 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC30.79■■■□□ 2.52
CLCN3P51790 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC30.79■■■□□ 2.52
CLCN3P51790 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
CLCN3P51790 CAHM-201ENST00000604200 896 ntBASIC30.78■■■□□ 2.52
CLCN3P51790 GIPC1-201ENST00000345425 1782 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CLCN3P51790 NADK2-202ENST00000381937 2243 ntAPPRIS P1 TSL 2 BASIC30.78■■■□□ 2.52
CLCN3P51790 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
CLCN3P51790 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
CLCN3P51790 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC30.76■■■□□ 2.51
CLCN3P51790 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC30.76■■■□□ 2.51
CLCN3P51790 MAPK4-202ENST00000540640 1576 ntTSL 2 BASIC30.75■■■□□ 2.51
CLCN3P51790 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC30.75■■■□□ 2.51
CLCN3P51790 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC30.74■■■□□ 2.51
CLCN3P51790 CTDNEP1-210ENST00000574322 1708 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
CLCN3P51790 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
CLCN3P51790 PCBD2-201ENST00000254908 1223 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CLCN3P51790 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
CLCN3P51790 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC30.7■■■□□ 2.5
CLCN3P51790 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
CLCN3P51790 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
CLCN3P51790 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
CLCN3P51790 AL391121.1-201ENST00000607967 1349 ntBASIC30.66■■■□□ 2.5
CLCN3P51790 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC30.64■■■□□ 2.49
CLCN3P51790 SSBP3-204ENST00000371320 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.63■■■□□ 2.49
CLCN3P51790 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
CLCN3P51790 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC30.62■■■□□ 2.49
CLCN3P51790 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
CLCN3P51790 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
CLCN3P51790 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
CLCN3P51790 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
CLCN3P51790 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
CLCN3P51790 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CLCN3P51790 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
CLCN3P51790 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC30.54■■■□□ 2.48
CLCN3P51790 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC30.51■■■□□ 2.47
CLCN3P51790 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC30.51■■■□□ 2.47
CLCN3P51790 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC30.5■■■□□ 2.47
CLCN3P51790 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC30.49■■■□□ 2.47
CLCN3P51790 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
CLCN3P51790 EBPL-202ENST00000378268 680 ntTSL 3 BASIC30.48■■■□□ 2.47
CLCN3P51790 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC30.48■■■□□ 2.47
CLCN3P51790 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC30.46■■■□□ 2.47
CLCN3P51790 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CLCN3P51790 TUBB6-201ENST00000317702 2064 ntAPPRIS P1 TSL 1 (best) BASIC30.46■■■□□ 2.47
CLCN3P51790 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC30.45■■■□□ 2.47
CLCN3P51790 CHST12-204ENST00000618655 2131 ntAPPRIS P1 TSL 1 (best) BASIC30.45■■■□□ 2.47
CLCN3P51790 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC30.45■■■□□ 2.46
CLCN3P51790 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC30.44■■■□□ 2.46
CLCN3P51790 RPS2P35-201ENST00000443417 897 ntBASIC30.44■■■□□ 2.46
CLCN3P51790 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CLCN3P51790 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC30.42■■■□□ 2.46
CLCN3P51790 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC30.41■■■□□ 2.46
CLCN3P51790 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC30.41■■■□□ 2.46
CLCN3P51790 SCARA3-202ENST00000337221 1910 ntTSL 1 (best) BASIC30.39■■■□□ 2.46
CLCN3P51790 RASGEF1C-207ENST00000615330 2268 ntTSL 5 BASIC30.39■■■□□ 2.46
CLCN3P51790 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.39■■■□□ 2.45
CLCN3P51790 C7orf50-202ENST00000397098 2131 ntAPPRIS P2 TSL 1 (best) BASIC30.38■■■□□ 2.45
CLCN3P51790 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC30.38■■■□□ 2.45
CLCN3P51790 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC30.36■■■□□ 2.45
CLCN3P51790 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC30.36■■■□□ 2.45
CLCN3P51790 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC30.35■■■□□ 2.45
CLCN3P51790 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLCN3P51790 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CLCN3P51790 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CLCN3P51790 AL162393.1-201ENST00000437852 946 ntBASIC30.33■■■□□ 2.45
CLCN3P51790 HNRNPLP2-201ENST00000568980 1570 ntBASIC30.32■■■□□ 2.45
CLCN3P51790 NRG1-221ENST00000614767 762 ntTSL 5 BASIC30.32■■■□□ 2.44
CLCN3P51790 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC30.31■■■□□ 2.44
CLCN3P51790 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CLCN3P51790 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC30.3■■■□□ 2.44
CLCN3P51790 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC30.3■■■□□ 2.44
CLCN3P51790 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC30.3■■■□□ 2.44
CLCN3P51790 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
CLCN3P51790 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC30.29■■■□□ 2.44
CLCN3P51790 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CLCN3P51790 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC30.27■■■□□ 2.44
CLCN3P51790 AP006261.1-201ENST00000584783 668 ntBASIC30.27■■■□□ 2.44
CLCN3P51790 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CLCN3P51790 WASH5P-204ENST00000632292 975 ntBASIC30.27■■■□□ 2.44
CLCN3P51790 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLCN3P51790 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
CLCN3P51790 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC30.24■■■□□ 2.43
CLCN3P51790 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC30.24■■■□□ 2.43
CLCN3P51790 SNTG2-201ENST00000308624 1888 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CLCN3P51790 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CLCN3P51790 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC30.2■■■□□ 2.43
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms